cluster # 2996

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Oryza sativa
cluster # 2996 cluster # 2996 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2996#0 length = 806 sequences # 1

consensus_2996#1 length = 662 sequences # 1

consensusID : consensus_2996#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 806
fasta sequence

                              [TTGACGGTGCAACCAGATTGGATATTTGAGTGTTGCATTACAAAGTTGATGCCAACACAATTTTCATCACCCAGTGACCCTTCGCCAAAAATGTCGCAACAAAATCTAACCCACCGGAGCTCAGCTTAGCTCACCTTAGTGTAGTTTATGGCGTTTCTTGCCCCATGTATATGGGAATCTTGGGATGCACCGCCGCTGCATCCCTAGTTGAGAAATACATCAGCAGAATGCAAAATACAATATGCCTCCTCTGCTCAGGAACGACACCTCAAGCTACATGGCGATCAATTTCTATCCTTTCTTTTACCGGTTAAGGAGCCACCATTATGTTCTGCTCGCCTCTGCTCACATCCATGAGATGCCTCGGTGGGAGATACATCCTGGACAACCCCGTTTGCTGCAGGAGCTTCATGGGGATGTTTGCAGTGCCCTGTCCTATCAATACAAAGCCAAATCCTAGCTCTGTCATCACCAGATTTCTCCTCCATAGGCACATGCCAAGATCCCATCTCCGATTCCTGAATCTCCGAAGAATATGGAGGTGGCATCATAAGCACCGCCTTTCCTTTACTAAAGGTGTACTTGACCTGATGCCGTTGCTTCCACTTGGGGAAAAAAGATGACCCCAAGAGCTCAAATATGTGATCTCTCATTTCATCATTAGTCACAAGCAAACAATTCAACCTAATCGCCGCATACAGCCAATACCAGTCATCATTTGACCCAATTGGTGAAGTGTACAATGCCCCGTTCGCTCTCCAGGTTTCAATCAGGTGTCTATTAGATGCATTTTCCATAAGCTTGGC]

[+] EMBL CB670676             [TTGACGGTGCAACCAGATTGGATATTTGAGTGTTGCATTACAAAGTTGATGCCAACACAATTTTCATCACCCAGTGACCCTTCGCCAAAAATGTCGCAACAAAATCTAACCCACCGGAGCTCAGCTTAGCTCACCTTAGTGTAGTTTATGGCGTTTCTTGCCCCATGTATATGGGAATCTTGGGATGCACCGCCGCTGCATCCCTAGTTGAGAAATACATCAGCAGAATGCAAAATACAATATGCCTCCTCTGCTCAGGAACGACACCTCAAGCTACATGGCGATCAATTTCTATCCTTTCTTTTACCGGTTAAGGAGCCACCATTATGTTCTGCTCGCCTCTGCTCACATCCATGAGATGCCTCGGTGGGAGATACATCCTGGACAACCCCGTTTGCTGCAGGAGCTTCATGGGGATGTTTGCAGTGCCCTGTCCTATCAATACAAAGCCAAATCCTAGCTCTGTCATCACCAGATTTCTCCTCCATAGGCACATGCCAAGATCCCATCTCCGATTCCTGAATCTCCGAAGAATATGGAGGTGGCATCATAAGCACCGCCTTTCCTTTACTAAAGGTGTACTTGACCTGATGCCGTTGCTTCCACTTGGGGAAAAAAGATGACCCCAAGAGCTCAAATATGTGATCTCTCATTTCATCATTAGTCACAAGCAAACAATTCAACCTAATCGCCGCATACAGCCAATACCAGTCATCATTTGACCCAATTGGTGAAGTGTACAATGCCCCGTTCGCTCTCCAGGTTTCAATCAGGTGTCTATTAGATGCATTTTCCATAAGCTTGGC]




>consensus_2996#0
TTGACGGTGCAACCAGATTGGATATTTGAGTGTTGCATTACAAAGTTGATGCCAACACAA
TTTTCATCACCCAGTGACCCTTCGCCAAAAATGTCGCAACAAAATCTAACCCACCGGAGC
TCAGCTTAGCTCACCTTAGTGTAGTTTATGGCGTTTCTTGCCCCATGTATATGGGAATCT
TGGGATGCACCGCCGCTGCATCCCTAGTTGAGAAATACATCAGCAGAATGCAAAATACAA
TATGCCTCCTCTGCTCAGGAACGACACCTCAAGCTACATGGCGATCAATTTCTATCCTTT
CTTTTACCGGTTAAGGAGCCACCATTATGTTCTGCTCGCCTCTGCTCACATCCATGAGAT
GCCTCGGTGGGAGATACATCCTGGACAACCCCGTTTGCTGCAGGAGCTTCATGGGGATGT
TTGCAGTGCCCTGTCCTATCAATACAAAGCCAAATCCTAGCTCTGTCATCACCAGATTTC
TCCTCCATAGGCACATGCCAAGATCCCATCTCCGATTCCTGAATCTCCGAAGAATATGGA
GGTGGCATCATAAGCACCGCCTTTCCTTTACTAAAGGTGTACTTGACCTGATGCCGTTGC
TTCCACTTGGGGAAAAAAGATGACCCCAAGAGCTCAAATATGTGATCTCTCATTTCATCA
TTAGTCACAAGCAAACAATTCAACCTAATCGCCGCATACAGCCAATACCAGTCATCATTT
GACCCAATTGGTGAAGTGTACAATGCCCCGTTCGCTCTCCAGGTTTCAATCAGGTGTCTA
TTAGATGCATTTTCCATAAGCTTGGC

consensusID : consensus_2996#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 662
fasta sequence

                              [TTACAGAGGTGCAANTGACCNTCCATTATATATGAAGAAATTGACGGGTGCAACCAGATTGGATATTCGGAGTGTTACATTACAAAGTTGATGCCAACACAAAATTTTCATCACNCAGTGCCCCTTCGCCAAAAATGTCGCANCANAATCTAACCCACCGGAGCTCAGCTTAGCTCGCCTTAGTGTAGTNTACGGCGTTTCTCGTCCCGTGTATATGGGGATTTTGGGATGCACCGCCGCTGCTTCCCTAGTTGAGAAATACATCAGCAGAATGCAAAACACAATATGCCTTCTCTGCTCAGGAACGACACCTCAAGCTACATGCAGCTGCCTGGAAGGCGATCAATTTCTATCCTTTCTTTTACCGGTTAAGGAGCCACCATTACGTTCTGCTCGCCTCTGCTCACATCCATGAGATGCCTCGGTGGGAGATACATCCTGGACAACCCCGTTTGCTGCAGGAGCTTCATGGGGATGTTTGCAGTGCCCTGTCCTATCAATACAAAGCCAAATCCNAGCTCGTGTCATCACCAGATTTCTCCTCCATAGGCACATGCCAAGATCCCATCTCCGATTCCTAATCTCTAAGAATATGGGGGGGCATCATAGCACCGCCTTTCCTTNCCCCCTGTCNNGTCCNCCCCNAACAAGCNTNCGANTCC]

[-] EMBL CA764846             [TTACAGAGGTGCAANTGACCNTCCATTATATATGAAGAAATTGACGGGTGCAACCAGATTGGATATTCGGAGTGTTACATTACAAAGTTGATGCCAACACAAAATTTTCATCACNCAGTGCCCCTTCGCCAAAAATGTCGCANCANAATCTAACCCACCGGAGCTCAGCTTAGCTCGCCTTAGTGTAGTNTACGGCGTTTCTCGTCCCGTGTATATGGGGATTTTGGGATGCACCGCCGCTGCTTCCCTAGTTGAGAAATACATCAGCAGAATGCAAAACACAATATGCCTTCTCTGCTCAGGAACGACACCTCAAGCTACATGCAGCTGCCTGGAAGGCGATCAATTTCTATCCTTTCTTTTACCGGTTAAGGAGCCACCATTACGTTCTGCTCGCCTCTGCTCACATCCATGAGATGCCTCGGTGGGAGATACATCCTGGACAACCCCGTTTGCTGCAGGAGCTTCATGGGGATGTTTGCAGTGCCCTGTCCTATCAATACAAAGCCAAATCCNAGCTCGTGTCATCACCAGATTTCTCCTCCATAGGCACATGCCAAGATCCCATCTCCGATTCCTAATCTCTAAGAATATGGGGGGGCATCATAGCACCGCCTTTCCTTNCCCCCTGTCNNGTCCNCCCCNAACAAGCNTNCGANTCC]




>consensus_2996#1
TTACAGAGGTGCAANTGACCNTCCATTATATATGAAGAAATTGACGGGTGCAACCAGATT
GGATATTCGGAGTGTTACATTACAAAGTTGATGCCAACACAAAATTTTCATCACNCAGTG
CCCCTTCGCCAAAAATGTCGCANCANAATCTAACCCACCGGAGCTCAGCTTAGCTCGCCT
TAGTGTAGTNTACGGCGTTTCTCGTCCCGTGTATATGGGGATTTTGGGATGCACCGCCGC
TGCTTCCCTAGTTGAGAAATACATCAGCAGAATGCAAAACACAATATGCCTTCTCTGCTC
AGGAACGACACCTCAAGCTACATGCAGCTGCCTGGAAGGCGATCAATTTCTATCCTTTCT
TTTACCGGTTAAGGAGCCACCATTACGTTCTGCTCGCCTCTGCTCACATCCATGAGATGC
CTCGGTGGGAGATACATCCTGGACAACCCCGTTTGCTGCAGGAGCTTCATGGGGATGTTT
GCAGTGCCCTGTCCTATCAATACAAAGCCAAATCCNAGCTCGTGTCATCACCAGATTTCT
CCTCCATAGGCACATGCCAAGATCCCATCTCCGATTCCTAATCTCTAAGAATATGGGGGG
GCATCATAGCACCGCCTTTCCTTNCCCCCTGTCNNGTCCNCCCCNAACAAGCNTNCGANT
CC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2996#0      ----------------------------------------TTGACGG-TGCAACCAGATT 19
consensus_2996#1      TTACAGAGGTGCAANTGACCNTCCATTATATATGAAGAAATTGACGGGTGCAACCAGATT 60
                                                              ******* ************

consensus_2996#0      GGATATTTG-AGTGTTGCATTACAAAGTTGATGCCAACACAA--TTTTCATCACCCAGTG 76
consensus_2996#1      GGATATTCGGAGTGTTACATTACAAAGTTGATGCCAACACAAAATTTTCATCACNCAGTG 120
                      ******* * ****** *************************  ********** *****

consensus_2996#0      ACCCTTCGCCAAAAATGTCGCAACAAAATCTAACCCACCGGAGCTCAGCTTAGCTCACCT 136
consensus_2996#1      CCCCTTCGCCAAAAATGTCGCANCANAATCTAACCCACCGGAGCTCAGCTTAGCTCGCCT 180
                       ********************* ** ****************************** ***

consensus_2996#0      TAGTGTAGTTTATGGCGTTTCTTGCCCCATGTATATGGGAATCTTGGGATGCACCGCCGC 196
consensus_2996#1      TAGTGTAGTNTACGGCGTTTCTCGTCCCGTGTATATGGGGATTTTGGGATGCACCGCCGC 240
                      ********* ** ********* * *** ********** ** *****************

consensus_2996#0      TGCATCCCTAGTTGAGAAATACATCAGCAGAATGCAAAATACAATATGCCTCCTCTGCTC 256
consensus_2996#1      TGCTTCCCTAGTTGAGAAATACATCAGCAGAATGCAAAACACAATATGCCTTCTCTGCTC 300
                      *** *********************************** *********** ********

consensus_2996#0      AGGAACGACACCTCAAGCTACATG--------------GCGATCAATTTCTATCCTTTCT 302
consensus_2996#1      AGGAACGACACCTCAAGCTACATGCAGCTGCCTGGAAGGCGATCAATTTCTATCCTTTCT 360
                      ************************              **********************

consensus_2996#0      TTTACCGGTTAAGGAGCCACCATTATGTTCTGCTCGCCTCTGCTCACATCCATGAGATGC 362
consensus_2996#1      TTTACCGGTTAAGGAGCCACCATTACGTTCTGCTCGCCTCTGCTCACATCCATGAGATGC 420
                      ************************* **********************************

consensus_2996#0      CTCGGTGGGAGATACATCCTGGACAACCCCGTTTGCTGCAGGAGCTTCATGGGGATGTTT 422
consensus_2996#1      CTCGGTGGGAGATACATCCTGGACAACCCCGTTTGCTGCAGGAGCTTCATGGGGATGTTT 480
                      ************************************************************

consensus_2996#0      GCAGTGCCCTGTCCTATCAATACAAAGCCAAATCCTAGCTC-TGTCATCACCAGATTTCT 481
consensus_2996#1      GCAGTGCCCTGTCCTATCAATACAAAGCCAAATCCNAGCTCGTGTCATCACCAGATTTCT 540
                      *********************************** ***** ******************

consensus_2996#0      CCTCCATAGGCACATGCCAAGATCCCATCTCCGATTCCTGAATCTCCGAAGAATATGGAG 541
consensus_2996#1      CCTCCATAGGCACATGCCAAGATCCCATCTCCGATTCCT-AATCTCT-AAGAATATGGGG 598
                      *************************************** ******  ********** *

consensus_2996#0      GTGGCATCATAAGCACCGCCTTTCCTTTACTAAAGGTGTACTTGACCTGAT---GCCGTT 598
consensus_2996#1      G-GGCATCATA-GCACCGCCTTTCCTTNCCCCCTGTCNNGTCCNCCCCNAACAAGCNTNC 656
                      * ********* ***************  *    *          **  *    **    

consensus_2996#0      GCTTCCACTTGGGGAAAAAAGATGACCCCAAGAGCTCAAATATGTGATCTCTCATTTCAT 658
consensus_2996#1      GANTCC------------------------------------------------------ 662
                      *  ***                                                      

consensus_2996#0      CATTAGTCACAAGCAAACAATTCAACCTAATCGCCGCATACAGCCAATACCAGTCATCAT 718
consensus_2996#1      ------------------------------------------------------------
                                                                                  

consensus_2996#0      TTGACCCAATTGGTGAAGTGTACAATGCCCCGTTCGCTCTCCAGGTTTCAATCAGGTGTC 778
consensus_2996#1      ------------------------------------------------------------
                                                                                  

consensus_2996#0      TATTAGATGCATTTTCCATAAGCTTGGC 806
consensus_2996#1      ----------------------------