cluster # 2997

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Oryza sativa
cluster # 2997 cluster # 2997 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2997#0 length = 484 sequences # 1

consensus_2997#1 length = 475 sequences # 1

consensusID : consensus_2997#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence

                              [ACACCAGTGGATATAAGTCTAGCTGCCATAGAAGCCTGTACCGATGGATTTTCGGAATCAAAAAAAGTTGGGAGTGGTGCGTATGGAAAGGTTTACAAGGGAGTTTACAACGAGGAGGAACTTGCATTCAAGAAGATTGATGGCTTGGCCGTGCTTAACGAGGATCAATTCAAGAATGAACTTAAACACCTAATGAGTGTCCAGCATAGAAATATCGTTCGGTTTGTTGGTTACTGTTCTCAAATAAAAGAAAAATTCATCTGGCGAGGAAAGGAATACGTTAGTGTTCAATATATAACAAGNATTCTGTGCTTTGAGTATTTGCCAGGTGGANNNNTTGACAAGCATCTGGATAAAGAATCTGAATCTGATGGATTTGACTGGCGCACANGATACAATATAATCNNNNNNATTNNNNNNNNATTANNNNACNTCCATGNANNNNNNNNNNNTATTTTCCACTTNNNNNNGAAACCTGCCNNTN]

[+] EMBL CF196693             [ACACCAGTGGATATAAGTCTAGCTGCCATAGAAGCCTGTACCGATGGATTTTCGGAATCAAAAAAAGTTGGGAGTGGTGCGTATGGAAAGGTTTACAAGGGAGTTTACAACGAGGAGGAACTTGCATTCAAGAAGATTGATGGCTTGGCCGTGCTTAACGAGGATCAATTCAAGAATGAACTTAAACACCTAATGAGTGTCCAGCATAGAAATATCGTTCGGTTTGTTGGTTACTGTTCTCAAATAAAAGAAAAATTCATCTGGCGAGGAAAGGAATACGTTAGTGTTCAATATATAACAAGNATTCTGTGCTTTGAGTATTTGCCAGGTGGANNNNTTGACAAGCATCTGGATAAAGAATCTGAATCTGATGGATTTGACTGGCGCACANGATACAATATAATCNNNNNNATTNNNNNNNNATTANNNNACNTCCATGNANNNNNNNNNNNTATTTTCCACTTNNNNNNGAAACCTGCCNNTN]




>consensus_2997#0
ACACCAGTGGATATAAGTCTAGCTGCCATAGAAGCCTGTACCGATGGATTTTCGGAATCA
AAAAAAGTTGGGAGTGGTGCGTATGGAAAGGTTTACAAGGGAGTTTACAACGAGGAGGAA
CTTGCATTCAAGAAGATTGATGGCTTGGCCGTGCTTAACGAGGATCAATTCAAGAATGAA
CTTAAACACCTAATGAGTGTCCAGCATAGAAATATCGTTCGGTTTGTTGGTTACTGTTCT
CAAATAAAAGAAAAATTCATCTGGCGAGGAAAGGAATACGTTAGTGTTCAATATATAACA
AGNATTCTGTGCTTTGAGTATTTGCCAGGTGGANNNNTTGACAAGCATCTGGATAAAGAA
TCTGAATCTGATGGATTTGACTGGCGCACANGATACAATATAATCNNNNNNATTNNNNNN
NNATTANNNNACNTCCATGNANNNNNNNNNNNTATTTTCCACTTNNNNNNGAAACCTGCC
NNTN

consensusID : consensus_2997#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence

                              [ACACCAGTGGATATAAGTCTAGCTGCCATAGAAGCCTGTACCGATGGATTTTCGGAATCAAAAAAAGTTGGGAGTGGTGCGTATGGAAAGGTTTACAAGGGAGTTTACAACGAGGAGGAACTTGCATTCAAGAAGATTGATGGCTTGGCCGTGCTTAACGAGGATCAATTCAAGAATGAACTTAAACACCTAATGAGTGTCCAGCATAGAAATATCGTTCGGTTTGTTGGTTACTGTTCTCAAATAAAAGAAAAATTCATCTGGCGAGGAAAGGAATACGTTAGTGTTCAATATATAANAAGAATTCTGTGCTTTGAGTATTTGCCAGGTGGAAGCCTTGACAAGCATCTGGATAAAGAATCTGAATCTGATGGATTTGACTGGCGCACACGATACAATATAATCAAGGTGATTTCCCAAGGATTAAATTACCNNNNNGAATTNNNNAACCTATTTTCCNNNNNNNNNTGANNCC]

[+] EMBL CF196663             [ACACCAGTGGATATAAGTCTAGCTGCCATAGAAGCCTGTACCGATGGATTTTCGGAATCAAAAAAAGTTGGGAGTGGTGCGTATGGAAAGGTTTACAAGGGAGTTTACAACGAGGAGGAACTTGCATTCAAGAAGATTGATGGCTTGGCCGTGCTTAACGAGGATCAATTCAAGAATGAACTTAAACACCTAATGAGTGTCCAGCATAGAAATATCGTTCGGTTTGTTGGTTACTGTTCTCAAATAAAAGAAAAATTCATCTGGCGAGGAAAGGAATACGTTAGTGTTCAATATATAANAAGAATTCTGTGCTTTGAGTATTTGCCAGGTGGAAGCCTTGACAAGCATCTGGATAAAGAATCTGAATCTGATGGATTTGACTGGCGCACACGATACAATATAATCAAGGTGATTTCCCAAGGATTAAATTACCNNNNNGAATTNNNNAACCTATTTTCCNNNNNNNNNTGANNCC]




>consensus_2997#1
ACACCAGTGGATATAAGTCTAGCTGCCATAGAAGCCTGTACCGATGGATTTTCGGAATCA
AAAAAAGTTGGGAGTGGTGCGTATGGAAAGGTTTACAAGGGAGTTTACAACGAGGAGGAA
CTTGCATTCAAGAAGATTGATGGCTTGGCCGTGCTTAACGAGGATCAATTCAAGAATGAA
CTTAAACACCTAATGAGTGTCCAGCATAGAAATATCGTTCGGTTTGTTGGTTACTGTTCT
CAAATAAAAGAAAAATTCATCTGGCGAGGAAAGGAATACGTTAGTGTTCAATATATAANA
AGAATTCTGTGCTTTGAGTATTTGCCAGGTGGAAGCCTTGACAAGCATCTGGATAAAGAA
TCTGAATCTGATGGATTTGACTGGCGCACACGATACAATATAATCAAGGTGATTTCCCAA
GGATTAAATTACCNNNNNGAATTNNNNAACCTATTTTCCNNNNNNNNNTGANNCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2997#0      ACACCAGTGGATATAAGTCTAGCTGCCATAGAAGCCTGTACCGATGGATTTTCGGAATCA 60
consensus_2997#1      ACACCAGTGGATATAAGTCTAGCTGCCATAGAAGCCTGTACCGATGGATTTTCGGAATCA 60
                      ************************************************************

consensus_2997#0      AAAAAAGTTGGGAGTGGTGCGTATGGAAAGGTTTACAAGGGAGTTTACAACGAGGAGGAA 120
consensus_2997#1      AAAAAAGTTGGGAGTGGTGCGTATGGAAAGGTTTACAAGGGAGTTTACAACGAGGAGGAA 120
                      ************************************************************

consensus_2997#0      CTTGCATTCAAGAAGATTGATGGCTTGGCCGTGCTTAACGAGGATCAATTCAAGAATGAA 180
consensus_2997#1      CTTGCATTCAAGAAGATTGATGGCTTGGCCGTGCTTAACGAGGATCAATTCAAGAATGAA 180
                      ************************************************************

consensus_2997#0      CTTAAACACCTAATGAGTGTCCAGCATAGAAATATCGTTCGGTTTGTTGGTTACTGTTCT 240
consensus_2997#1      CTTAAACACCTAATGAGTGTCCAGCATAGAAATATCGTTCGGTTTGTTGGTTACTGTTCT 240
                      ************************************************************

consensus_2997#0      CAAATAAAAGAAAAATTCATCTGGCGAGGAAAGGAATACGTTAGTGTTCAATATATAACA 300
consensus_2997#1      CAAATAAAAGAAAAATTCATCTGGCGAGGAAAGGAATACGTTAGTGTTCAATATATAANA 300
                      ********************************************************** *

consensus_2997#0      AGNATTCTGTGCTTTGAGTATTTGCCAGGTGGANNNNTTGACAAGCATCTGGATAAAGAA 360
consensus_2997#1      AGAATTCTGTGCTTTGAGTATTTGCCAGGTGGAAGCCTTGACAAGCATCTGGATAAAGAA 360
                      ** ******************************    ***********************

consensus_2997#0      TCTGAATCTGATGGATTTGACTGGCGCACANGATACAATATAATCNNNNNNATTNNNNNN 420
consensus_2997#1      TCTGAATCTGATGGATTTGACTGGCGCACACGATACAATATAATCAAGGTGATTTCCCAA 420
                      ****************************** **************      ***      

consensus_2997#0      NNATTANNNNACNTCCATGNANNNNNNNNNNNTATTTTCCACTTNNNNNNGAAACCTGCC 480
consensus_2997#1      GGATTAAATTACCNNNNNGAATTNNNNAACCT-ATTTTCCNNNNNNNNNTGANNCC---- 475
                        ****    **      * *  ****      *******    ***** **  **    

consensus_2997#0      NNTN 484
consensus_2997#1      ----