cluster # 2998

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Oryza sativa
cluster # 2998 cluster # 2998 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2998#0 length = 565 sequences # 1

consensus_2998#1 length = 485 sequences # 1

consensusID : consensus_2998#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence

                              [AGCCAAAGCAAATCTTTGAGCAAGCTAGGCAAAACTTAGACCCCAAAAGAAAAAAATGGAGGCAAATCTCAAGAACAGTGCTAGAGGAGGGGCCAAGGGGAAGGTGGTGACAGTATACTCCAAGTATGTCAAACCCCAGAGCAGCCCTTCTGTAAGTGTCACACAGGCCTACTCCTACCAGCCAAACTACTCTTCCTCCATTGATGTAGCTGCAGCTGCAAACGGCTCCTATGGTGGCGGCAACGTCGACGAGAGGGCGACGGCTTACATCTTGGCCGTCAGAGAGCGTTTCAAGAAAGAATGGATGTAGGAAGATTGTGTCAGGATCCATTCCAGAAGAGGTTTATATTTGCAAGAATGTCTTCTGGGTAGCCATGCCTATACTTGCATGGATGTAGGTAGTAGCTCCTTACTATGTCATGCTTTCCCATGTTCTTCCTTCTCCTTTTCTGTCAAACTACAGTTTGATTGGATGAGTGTAAGGGATGAATTACAGCTTCTGTTTCTGAAACCTGGTTGTCGTTTTGACTCTCCAGAATATTTACCTTGCTGGTTTGAAGAGCTA]

[+] EMBL CB096834             [AGCCAAAGCAAATCTTTGAGCAAGCTAGGCAAAACTTAGACCCCAAAAGAAAAAAATGGAGGCAAATCTCAAGAACAGTGCTAGAGGAGGGGCCAAGGGGAAGGTGGTGACAGTATACTCCAAGTATGTCAAACCCCAGAGCAGCCCTTCTGTAAGTGTCACACAGGCCTACTCCTACCAGCCAAACTACTCTTCCTCCATTGATGTAGCTGCAGCTGCAAACGGCTCCTATGGTGGCGGCAACGTCGACGAGAGGGCGACGGCTTACATCTTGGCCGTCAGAGAGCGTTTCAAGAAAGAATGGATGTAGGAAGATTGTGTCAGGATCCATTCCAGAAGAGGTTTATATTTGCAAGAATGTCTTCTGGGTAGCCATGCCTATACTTGCATGGATGTAGGTAGTAGCTCCTTACTATGTCATGCTTTCCCATGTTCTTCCTTCTCCTTTTCTGTCAAACTACAGTTTGATTGGATGAGTGTAAGGGATGAATTACAGCTTCTGTTTCTGAAACCTGGTTGTCGTTTTGACTCTCCAGAATATTTACCTTGCTGGTTTGAAGAGCTA]




>consensus_2998#0
AGCCAAAGCAAATCTTTGAGCAAGCTAGGCAAAACTTAGACCCCAAAAGAAAAAAATGGA
GGCAAATCTCAAGAACAGTGCTAGAGGAGGGGCCAAGGGGAAGGTGGTGACAGTATACTC
CAAGTATGTCAAACCCCAGAGCAGCCCTTCTGTAAGTGTCACACAGGCCTACTCCTACCA
GCCAAACTACTCTTCCTCCATTGATGTAGCTGCAGCTGCAAACGGCTCCTATGGTGGCGG
CAACGTCGACGAGAGGGCGACGGCTTACATCTTGGCCGTCAGAGAGCGTTTCAAGAAAGA
ATGGATGTAGGAAGATTGTGTCAGGATCCATTCCAGAAGAGGTTTATATTTGCAAGAATG
TCTTCTGGGTAGCCATGCCTATACTTGCATGGATGTAGGTAGTAGCTCCTTACTATGTCA
TGCTTTCCCATGTTCTTCCTTCTCCTTTTCTGTCAAACTACAGTTTGATTGGATGAGTGT
AAGGGATGAATTACAGCTTCTGTTTCTGAAACCTGGTTGTCGTTTTGACTCTCCAGAATA
TTTACCTTGCTGGTTTGAAGAGCTA

consensusID : consensus_2998#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 485
fasta sequence

                              [CAAGGANGACAGAAGNCGCAGTCAAAGNAGATCTTTGNGCAAGCTAGGCANAACTTANACCCCAAAAGAAAAAAATGGAGGCAAATCTCAAGAACACGTGCTNGAGGAGGGGCCAAGGGGAAGGTGGTGACAGTATACTCCAAGTCTGTGAAACCCCAGAGCAGCCCTTCTGTAAGTGTNACACAGGCCTACTCCTACCAGCCAAACTACTCTTCCTCCATTGATGNNGCTGCAGCTGCAAACGGCTCCTATGGTGGCGGCAACGTCGACGAGAGGGCGACGGTTTACATCTTGGCCGTCAGAGAGCGTTTCAAGAAAGAATGGATGNAGGAAGATTGNGTCAGGNTCCATTCCAGAAGAGGTTTATATTTGCAAGAATGTCNTNTGGNNANCCATGCCTATACTTGCANGGATGTAGGTNGTANCTCCNTACTATGNCATGCTTTCNCATGTNCCTGCTTCTCCTTNCCTGTCNAACTACAGNT]

[+] EMBL CA764855             [CAAGGANGACAGAAGNCGCAGTCAAAGNAGATCTTTGNGCAAGCTAGGCANAACTTANACCCCAAAAGAAAAAAATGGAGGCAAATCTCAAGAACACGTGCTNGAGGAGGGGCCAAGGGGAAGGTGGTGACAGTATACTCCAAGTCTGTGAAACCCCAGAGCAGCCCTTCTGTAAGTGTNACACAGGCCTACTCCTACCAGCCAAACTACTCTTCCTCCATTGATGNNGCTGCAGCTGCAAACGGCTCCTATGGTGGCGGCAACGTCGACGAGAGGGCGACGGTTTACATCTTGGCCGTCAGAGAGCGTTTCAAGAAAGAATGGATGNAGGAAGATTGNGTCAGGNTCCATTCCAGAAGAGGTTTATATTTGCAAGAATGTCNTNTGGNNANCCATGCCTATACTTGCANGGATGTAGGTNGTANCTCCNTACTATGNCATGCTTTCNCATGTNCCTGCTTCTCCTTNCCTGTCNAACTACAGNT]




>consensus_2998#1
CAAGGANGACAGAAGNCGCAGTCAAAGNAGATCTTTGNGCAAGCTAGGCANAACTTANAC
CCCAAAAGAAAAAAATGGAGGCAAATCTCAAGAACACGTGCTNGAGGAGGGGCCAAGGGG
AAGGTGGTGACAGTATACTCCAAGTCTGTGAAACCCCAGAGCAGCCCTTCTGTAAGTGTN
ACACAGGCCTACTCCTACCAGCCAAACTACTCTTCCTCCATTGATGNNGCTGCAGCTGCA
AACGGCTCCTATGGTGGCGGCAACGTCGACGAGAGGGCGACGGTTTACATCTTGGCCGTC
AGAGAGCGTTTCAAGAAAGAATGGATGNAGGAAGATTGNGTCAGGNTCCATTCCAGAAGA
GGTTTATATTTGCAAGAATGTCNTNTGGNNANCCATGCCTATACTTGCANGGATGTAGGT
NGTANCTCCNTACTATGNCATGCTTTCNCATGTNCCTGCTTCTCCTTNCCTGTCNAACTA
CAGNT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2998#0      -------------------AGCCAAAGCAAATCTTTGAGCAAGCTAGGCAAAACTTAGAC 41
consensus_2998#1      CAAGGANGACAGAAGNCGCAGTCAAAGNAGATCTTTGNGCAAGCTAGGCANAACTTANAC 60
                                         ** ***** * ******* ************ ****** **

consensus_2998#0      CCCAAAAGAAAAAAATGGAGGCAAATCTCAAGAACA-GTGCTAGAGGAGGGGCCAAGGGG 100
consensus_2998#1      CCCAAAAGAAAAAAATGGAGGCAAATCTCAAGAACACGTGCTNGAGGAGGGGCCAAGGGG 120
                      ************************************ ***** *****************

consensus_2998#0      AAGGTGGTGACAGTATACTCCAAGTATGTCAAACCCCAGAGCAGCCCTTCTGTAAGTGTC 160
consensus_2998#1      AAGGTGGTGACAGTATACTCCAAGTCTGTGAAACCCCAGAGCAGCCCTTCTGTAAGTGTN 180
                      ************************* *** ***************************** 

consensus_2998#0      ACACAGGCCTACTCCTACCAGCCAAACTACTCTTCCTCCATTGATGTAGCTGCAGCTGCA 220
consensus_2998#1      ACACAGGCCTACTCCTACCAGCCAAACTACTCTTCCTCCATTGATGNNGCTGCAGCTGCA 240
                      **********************************************  ************

consensus_2998#0      AACGGCTCCTATGGTGGCGGCAACGTCGACGAGAGGGCGACGGCTTACATCTTGGCCGTC 280
consensus_2998#1      AACGGCTCCTATGGTGGCGGCAACGTCGACGAGAGGGCGACGGTTTACATCTTGGCCGTC 300
                      ******************************************* ****************

consensus_2998#0      AGAGAGCGTTTCAAGAAAGAATGGATGTAGGAAGATTGTGTCAGGATCCATTCCAGAAGA 340
consensus_2998#1      AGAGAGCGTTTCAAGAAAGAATGGATGNAGGAAGATTGNGTCAGGNTCCATTCCAGAAGA 360
                      *************************** ********** ****** **************

consensus_2998#0      GGTTTATATTTGCAAGAATGTCTTCTGGGTAGCCATGCCTATACTTGCATGGATGTAGGT 400
consensus_2998#1      GGTTTATATTTGCAAGAATGTCNTNTGGNNANCCATGCCTATACTTGCANGGATGTAGGT 420
                      ********************** * ***  * ***************** **********

consensus_2998#0      AGTAGCTCCTTACTATGTCATGCTTTCCCATGTTCTTCCTTCTCCTTTTCTGTCAAACTA 460
consensus_2998#1      NGTANCTCCNTACTATGNCATGCTTTCNCATGTNCCTGCTTCTCCTTNCCTGTCNAACTA 480
                       *** **** ******* ********* ***** * * *********  ***** *****

consensus_2998#0      CAGTTTGATTGGATGAGTGTAAGGGATGAATTACAGCTTCTGTTTCTGAAACCTGGTTGT 520
consensus_2998#1      CAGNT------------------------------------------------------- 485
                      *** *                                                       

consensus_2998#0      CGTTTTGACTCTCCAGAATATTTACCTTGCTGGTTTGAAGAGCTA 565
consensus_2998#1      ---------------------------------------------