These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2998#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [AGCCAAAGCAAATCTTTGAGCAAGCTAGGCAAAACTTAGACCCCAAAAGAAAAAAATGGAGGCAAATCTCAAGAACAGTGCTAGAGGAGGGGCCAAGGGGAAGGTGGTGACAGTATACTCCAAGTATGTCAAACCCCAGAGCAGCCCTTCTGTAAGTGTCACACAGGCCTACTCCTACCAGCCAAACTACTCTTCCTCCATTGATGTAGCTGCAGCTGCAAACGGCTCCTATGGTGGCGGCAACGTCGACGAGAGGGCGACGGCTTACATCTTGGCCGTCAGAGAGCGTTTCAAGAAAGAATGGATGTAGGAAGATTGTGTCAGGATCCATTCCAGAAGAGGTTTATATTTGCAAGAATGTCTTCTGGGTAGCCATGCCTATACTTGCATGGATGTAGGTAGTAGCTCCTTACTATGTCATGCTTTCCCATGTTCTTCCTTCTCCTTTTCTGTCAAACTACAGTTTGATTGGATGAGTGTAAGGGATGAATTACAGCTTCTGTTTCTGAAACCTGGTTGTCGTTTTGACTCTCCAGAATATTTACCTTGCTGGTTTGAAGAGCTA] [+] EMBL CB096834 [AGCCAAAGCAAATCTTTGAGCAAGCTAGGCAAAACTTAGACCCCAAAAGAAAAAAATGGAGGCAAATCTCAAGAACAGTGCTAGAGGAGGGGCCAAGGGGAAGGTGGTGACAGTATACTCCAAGTATGTCAAACCCCAGAGCAGCCCTTCTGTAAGTGTCACACAGGCCTACTCCTACCAGCCAAACTACTCTTCCTCCATTGATGTAGCTGCAGCTGCAAACGGCTCCTATGGTGGCGGCAACGTCGACGAGAGGGCGACGGCTTACATCTTGGCCGTCAGAGAGCGTTTCAAGAAAGAATGGATGTAGGAAGATTGTGTCAGGATCCATTCCAGAAGAGGTTTATATTTGCAAGAATGTCTTCTGGGTAGCCATGCCTATACTTGCATGGATGTAGGTAGTAGCTCCTTACTATGTCATGCTTTCCCATGTTCTTCCTTCTCCTTTTCTGTCAAACTACAGTTTGATTGGATGAGTGTAAGGGATGAATTACAGCTTCTGTTTCTGAAACCTGGTTGTCGTTTTGACTCTCCAGAATATTTACCTTGCTGGTTTGAAGAGCTA] consensusID : consensus_2998#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence [CAAGGANGACAGAAGNCGCAGTCAAAGNAGATCTTTGNGCAAGCTAGGCANAACTTANACCCCAAAAGAAAAAAATGGAGGCAAATCTCAAGAACACGTGCTNGAGGAGGGGCCAAGGGGAAGGTGGTGACAGTATACTCCAAGTCTGTGAAACCCCAGAGCAGCCCTTCTGTAAGTGTNACACAGGCCTACTCCTACCAGCCAAACTACTCTTCCTCCATTGATGNNGCTGCAGCTGCAAACGGCTCCTATGGTGGCGGCAACGTCGACGAGAGGGCGACGGTTTACATCTTGGCCGTCAGAGAGCGTTTCAAGAAAGAATGGATGNAGGAAGATTGNGTCAGGNTCCATTCCAGAAGAGGTTTATATTTGCAAGAATGTCNTNTGGNNANCCATGCCTATACTTGCANGGATGTAGGTNGTANCTCCNTACTATGNCATGCTTTCNCATGTNCCTGCTTCTCCTTNCCTGTCNAACTACAGNT] [+] EMBL CA764855 [CAAGGANGACAGAAGNCGCAGTCAAAGNAGATCTTTGNGCAAGCTAGGCANAACTTANACCCCAAAAGAAAAAAATGGAGGCAAATCTCAAGAACACGTGCTNGAGGAGGGGCCAAGGGGAAGGTGGTGACAGTATACTCCAAGTCTGTGAAACCCCAGAGCAGCCCTTCTGTAAGTGTNACACAGGCCTACTCCTACCAGCCAAACTACTCTTCCTCCATTGATGNNGCTGCAGCTGCAAACGGCTCCTATGGTGGCGGCAACGTCGACGAGAGGGCGACGGTTTACATCTTGGCCGTCAGAGAGCGTTTCAAGAAAGAATGGATGNAGGAAGATTGNGTCAGGNTCCATTCCAGAAGAGGTTTATATTTGCAAGAATGTCNTNTGGNNANCCATGCCTATACTTGCANGGATGTAGGTNGTANCTCCNTACTATGNCATGCTTTCNCATGTNCCTGCTTCTCCTTNCCTGTCNAACTACAGNT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2998#0 -------------------AGCCAAAGCAAATCTTTGAGCAAGCTAGGCAAAACTTAGAC 41 consensus_2998#1 CAAGGANGACAGAAGNCGCAGTCAAAGNAGATCTTTGNGCAAGCTAGGCANAACTTANAC 60 ** ***** * ******* ************ ****** ** consensus_2998#0 CCCAAAAGAAAAAAATGGAGGCAAATCTCAAGAACA-GTGCTAGAGGAGGGGCCAAGGGG 100 consensus_2998#1 CCCAAAAGAAAAAAATGGAGGCAAATCTCAAGAACACGTGCTNGAGGAGGGGCCAAGGGG 120 ************************************ ***** ***************** consensus_2998#0 AAGGTGGTGACAGTATACTCCAAGTATGTCAAACCCCAGAGCAGCCCTTCTGTAAGTGTC 160 consensus_2998#1 AAGGTGGTGACAGTATACTCCAAGTCTGTGAAACCCCAGAGCAGCCCTTCTGTAAGTGTN 180 ************************* *** ***************************** consensus_2998#0 ACACAGGCCTACTCCTACCAGCCAAACTACTCTTCCTCCATTGATGTAGCTGCAGCTGCA 220 consensus_2998#1 ACACAGGCCTACTCCTACCAGCCAAACTACTCTTCCTCCATTGATGNNGCTGCAGCTGCA 240 ********************************************** ************ consensus_2998#0 AACGGCTCCTATGGTGGCGGCAACGTCGACGAGAGGGCGACGGCTTACATCTTGGCCGTC 280 consensus_2998#1 AACGGCTCCTATGGTGGCGGCAACGTCGACGAGAGGGCGACGGTTTACATCTTGGCCGTC 300 ******************************************* **************** consensus_2998#0 AGAGAGCGTTTCAAGAAAGAATGGATGTAGGAAGATTGTGTCAGGATCCATTCCAGAAGA 340 consensus_2998#1 AGAGAGCGTTTCAAGAAAGAATGGATGNAGGAAGATTGNGTCAGGNTCCATTCCAGAAGA 360 *************************** ********** ****** ************** consensus_2998#0 GGTTTATATTTGCAAGAATGTCTTCTGGGTAGCCATGCCTATACTTGCATGGATGTAGGT 400 consensus_2998#1 GGTTTATATTTGCAAGAATGTCNTNTGGNNANCCATGCCTATACTTGCANGGATGTAGGT 420 ********************** * *** * ***************** ********** consensus_2998#0 AGTAGCTCCTTACTATGTCATGCTTTCCCATGTTCTTCCTTCTCCTTTTCTGTCAAACTA 460 consensus_2998#1 NGTANCTCCNTACTATGNCATGCTTTCNCATGTNCCTGCTTCTCCTTNCCTGTCNAACTA 480 *** **** ******* ********* ***** * * ********* ***** ***** consensus_2998#0 CAGTTTGATTGGATGAGTGTAAGGGATGAATTACAGCTTCTGTTTCTGAAACCTGGTTGT 520 consensus_2998#1 CAGNT------------------------------------------------------- 485 *** * consensus_2998#0 CGTTTTGACTCTCCAGAATATTTACCTTGCTGGTTTGAAGAGCTA 565 consensus_2998#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||