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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2998 cluster # 2998       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2998#0 length = 565 sequences # 1  
consensus_2998#1 length = 485 sequences # 1  

consensusID : consensus_2998#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence
                              [AGCCAAAGCAAATCTTTGAGCAAGCTAGGCAAAACTTAGACCCCAAAAGAAAAAAATGGAGGCAAATCTCAAGAACAGTGCTAGAGGAGGGGCCAAGGGGAAGGTGGTGACAGTATACTCCAAGTATGTCAAACCCCAGAGCAGCCCTTCTGTAAGTGTCACACAGGCCTACTCCTACCAGCCAAACTACTCTTCCTCCATTGATGTAGCTGCAGCTGCAAACGGCTCCTATGGTGGCGGCAACGTCGACGAGAGGGCGACGGCTTACATCTTGGCCGTCAGAGAGCGTTTCAAGAAAGAATGGATGTAGGAAGATTGTGTCAGGATCCATTCCAGAAGAGGTTTATATTTGCAAGAATGTCTTCTGGGTAGCCATGCCTATACTTGCATGGATGTAGGTAGTAGCTCCTTACTATGTCATGCTTTCCCATGTTCTTCCTTCTCCTTTTCTGTCAAACTACAGTTTGATTGGATGAGTGTAAGGGATGAATTACAGCTTCTGTTTCTGAAACCTGGTTGTCGTTTTGACTCTCCAGAATATTTACCTTGCTGGTTTGAAGAGCTA]

[+] EMBL CB096834             [AGCCAAAGCAAATCTTTGAGCAAGCTAGGCAAAACTTAGACCCCAAAAGAAAAAAATGGAGGCAAATCTCAAGAACAGTGCTAGAGGAGGGGCCAAGGGGAAGGTGGTGACAGTATACTCCAAGTATGTCAAACCCCAGAGCAGCCCTTCTGTAAGTGTCACACAGGCCTACTCCTACCAGCCAAACTACTCTTCCTCCATTGATGTAGCTGCAGCTGCAAACGGCTCCTATGGTGGCGGCAACGTCGACGAGAGGGCGACGGCTTACATCTTGGCCGTCAGAGAGCGTTTCAAGAAAGAATGGATGTAGGAAGATTGTGTCAGGATCCATTCCAGAAGAGGTTTATATTTGCAAGAATGTCTTCTGGGTAGCCATGCCTATACTTGCATGGATGTAGGTAGTAGCTCCTTACTATGTCATGCTTTCCCATGTTCTTCCTTCTCCTTTTCTGTCAAACTACAGTTTGATTGGATGAGTGTAAGGGATGAATTACAGCTTCTGTTTCTGAAACCTGGTTGTCGTTTTGACTCTCCAGAATATTTACCTTGCTGGTTTGAAGAGCTA]


>consensus_2998#0 AGCCAAAGCAAATCTTTGAGCAAGCTAGGCAAAACTTAGACCCCAAAAGAAAAAAATGGA GGCAAATCTCAAGAACAGTGCTAGAGGAGGGGCCAAGGGGAAGGTGGTGACAGTATACTC CAAGTATGTCAAACCCCAGAGCAGCCCTTCTGTAAGTGTCACACAGGCCTACTCCTACCA GCCAAACTACTCTTCCTCCATTGATGTAGCTGCAGCTGCAAACGGCTCCTATGGTGGCGG CAACGTCGACGAGAGGGCGACGGCTTACATCTTGGCCGTCAGAGAGCGTTTCAAGAAAGA ATGGATGTAGGAAGATTGTGTCAGGATCCATTCCAGAAGAGGTTTATATTTGCAAGAATG TCTTCTGGGTAGCCATGCCTATACTTGCATGGATGTAGGTAGTAGCTCCTTACTATGTCA TGCTTTCCCATGTTCTTCCTTCTCCTTTTCTGTCAAACTACAGTTTGATTGGATGAGTGT AAGGGATGAATTACAGCTTCTGTTTCTGAAACCTGGTTGTCGTTTTGACTCTCCAGAATA TTTACCTTGCTGGTTTGAAGAGCTA



consensusID : consensus_2998#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 485
fasta sequence
                              [CAAGGANGACAGAAGNCGCAGTCAAAGNAGATCTTTGNGCAAGCTAGGCANAACTTANACCCCAAAAGAAAAAAATGGAGGCAAATCTCAAGAACACGTGCTNGAGGAGGGGCCAAGGGGAAGGTGGTGACAGTATACTCCAAGTCTGTGAAACCCCAGAGCAGCCCTTCTGTAAGTGTNACACAGGCCTACTCCTACCAGCCAAACTACTCTTCCTCCATTGATGNNGCTGCAGCTGCAAACGGCTCCTATGGTGGCGGCAACGTCGACGAGAGGGCGACGGTTTACATCTTGGCCGTCAGAGAGCGTTTCAAGAAAGAATGGATGNAGGAAGATTGNGTCAGGNTCCATTCCAGAAGAGGTTTATATTTGCAAGAATGTCNTNTGGNNANCCATGCCTATACTTGCANGGATGTAGGTNGTANCTCCNTACTATGNCATGCTTTCNCATGTNCCTGCTTCTCCTTNCCTGTCNAACTACAGNT]

[+] EMBL CA764855             [CAAGGANGACAGAAGNCGCAGTCAAAGNAGATCTTTGNGCAAGCTAGGCANAACTTANACCCCAAAAGAAAAAAATGGAGGCAAATCTCAAGAACACGTGCTNGAGGAGGGGCCAAGGGGAAGGTGGTGACAGTATACTCCAAGTCTGTGAAACCCCAGAGCAGCCCTTCTGTAAGTGTNACACAGGCCTACTCCTACCAGCCAAACTACTCTTCCTCCATTGATGNNGCTGCAGCTGCAAACGGCTCCTATGGTGGCGGCAACGTCGACGAGAGGGCGACGGTTTACATCTTGGCCGTCAGAGAGCGTTTCAAGAAAGAATGGATGNAGGAAGATTGNGTCAGGNTCCATTCCAGAAGAGGTTTATATTTGCAAGAATGTCNTNTGGNNANCCATGCCTATACTTGCANGGATGTAGGTNGTANCTCCNTACTATGNCATGCTTTCNCATGTNCCTGCTTCTCCTTNCCTGTCNAACTACAGNT]


>consensus_2998#1 CAAGGANGACAGAAGNCGCAGTCAAAGNAGATCTTTGNGCAAGCTAGGCANAACTTANAC CCCAAAAGAAAAAAATGGAGGCAAATCTCAAGAACACGTGCTNGAGGAGGGGCCAAGGGG AAGGTGGTGACAGTATACTCCAAGTCTGTGAAACCCCAGAGCAGCCCTTCTGTAAGTGTN ACACAGGCCTACTCCTACCAGCCAAACTACTCTTCCTCCATTGATGNNGCTGCAGCTGCA AACGGCTCCTATGGTGGCGGCAACGTCGACGAGAGGGCGACGGTTTACATCTTGGCCGTC AGAGAGCGTTTCAAGAAAGAATGGATGNAGGAAGATTGNGTCAGGNTCCATTCCAGAAGA GGTTTATATTTGCAAGAATGTCNTNTGGNNANCCATGCCTATACTTGCANGGATGTAGGT NGTANCTCCNTACTATGNCATGCTTTCNCATGTNCCTGCTTCTCCTTNCCTGTCNAACTA CAGNT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2998#0      -------------------AGCCAAAGCAAATCTTTGAGCAAGCTAGGCAAAACTTAGAC 41
consensus_2998#1      CAAGGANGACAGAAGNCGCAGTCAAAGNAGATCTTTGNGCAAGCTAGGCANAACTTANAC 60
                                         ** ***** * ******* ************ ****** **

consensus_2998#0      CCCAAAAGAAAAAAATGGAGGCAAATCTCAAGAACA-GTGCTAGAGGAGGGGCCAAGGGG 100
consensus_2998#1      CCCAAAAGAAAAAAATGGAGGCAAATCTCAAGAACACGTGCTNGAGGAGGGGCCAAGGGG 120
                      ************************************ ***** *****************

consensus_2998#0      AAGGTGGTGACAGTATACTCCAAGTATGTCAAACCCCAGAGCAGCCCTTCTGTAAGTGTC 160
consensus_2998#1      AAGGTGGTGACAGTATACTCCAAGTCTGTGAAACCCCAGAGCAGCCCTTCTGTAAGTGTN 180
                      ************************* *** ***************************** 

consensus_2998#0      ACACAGGCCTACTCCTACCAGCCAAACTACTCTTCCTCCATTGATGTAGCTGCAGCTGCA 220
consensus_2998#1      ACACAGGCCTACTCCTACCAGCCAAACTACTCTTCCTCCATTGATGNNGCTGCAGCTGCA 240
                      **********************************************  ************

consensus_2998#0      AACGGCTCCTATGGTGGCGGCAACGTCGACGAGAGGGCGACGGCTTACATCTTGGCCGTC 280
consensus_2998#1      AACGGCTCCTATGGTGGCGGCAACGTCGACGAGAGGGCGACGGTTTACATCTTGGCCGTC 300
                      ******************************************* ****************

consensus_2998#0      AGAGAGCGTTTCAAGAAAGAATGGATGTAGGAAGATTGTGTCAGGATCCATTCCAGAAGA 340
consensus_2998#1      AGAGAGCGTTTCAAGAAAGAATGGATGNAGGAAGATTGNGTCAGGNTCCATTCCAGAAGA 360
                      *************************** ********** ****** **************

consensus_2998#0      GGTTTATATTTGCAAGAATGTCTTCTGGGTAGCCATGCCTATACTTGCATGGATGTAGGT 400
consensus_2998#1      GGTTTATATTTGCAAGAATGTCNTNTGGNNANCCATGCCTATACTTGCANGGATGTAGGT 420
                      ********************** * ***  * ***************** **********

consensus_2998#0      AGTAGCTCCTTACTATGTCATGCTTTCCCATGTTCTTCCTTCTCCTTTTCTGTCAAACTA 460
consensus_2998#1      NGTANCTCCNTACTATGNCATGCTTTCNCATGTNCCTGCTTCTCCTTNCCTGTCNAACTA 480
                       *** **** ******* ********* ***** * * *********  ***** *****

consensus_2998#0      CAGTTTGATTGGATGAGTGTAAGGGATGAATTACAGCTTCTGTTTCTGAAACCTGGTTGT 520
consensus_2998#1      CAGNT------------------------------------------------------- 485
                      *** *                                                       

consensus_2998#0      CGTTTTGACTCTCCAGAATATTTACCTTGCTGGTTTGAAGAGCTA 565
consensus_2998#1      ---------------------------------------------
                                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)