cluster # 2999

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Oryza sativa
cluster # 2999 cluster # 2999 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2999#0 length = 813 sequences # 1

consensus_2999#1 length = 411 sequences # 1

consensusID : consensus_2999#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 813
fasta sequence

                              [AAGGGGATAGTTACATGGGATATGCATTAGAACAAATTATTGCGGCAGACTTATGATGCTGAAGACTTATTAATTTTGACAGTGAGTAAAGATAGCCCAGCACTAACACTTGGTAGGTAATGAATAGAATAACATATACTGAGTCATTATACGTTGATGTTCGAGCAATGCACCATATAGGACCTGTACAAATAAAACTGCTAAATATTTTAGGGGTTATTGGCCCATGCCTTATACAGAAAAATTAATCCTCAGAGCTGCTCAAAGATTGTATTATCTTGTACTTGATACCCCTCCTTTTACAGTGATTAAAGAGCTCCTTTCTATTCACATAATGCTTCATATCTACCATACCATACCTGAATGTTCACTTATTAGCACCTGAATTAGGAATAAAGTGGATGATTGATGGGAATGAGATATTCCTTTTTTTGCTTTTATTTTTAGACCGTTATTGATTCGCTATCATAATGCCTCATATTCACTACAATGTTGACAATCCGATAGCCGGCATCATAGCTTTCAGACTGATCTTATCCATGAGTGATGAGTAGACAACAAAATACCCCGCTATTCAGGCTTAATGATTATTCTATAAACTGAGCAAATGTGAAACGCAGAACCGCTTGATGCCAAGTTACCCCCGGACTTTTCCAAATTAAAAGCACAGTCCAAAGGAATACTCCCTTTATACCCACCCTTGCTAGTCGAACAACACATTGCACAATCCCCAGTTTTTCGCAACTACCACAGTCGGGTGCACCGTCCCCCCTCTTTGCCTAGATCCACTTCAATTCTGACAGGGAATAAACT]

[+] EMBL CA764859             [AAGGGGATAGTTACATGGGATATGCATTAGAACAAATTATTGCGGCAGACTTATGATGCTGAAGACTTATTAATTTTGACAGTGAGTAAAGATAGCCCAGCACTAACACTTGGTAGGTAATGAATAGAATAACATATACTGAGTCATTATACGTTGATGTTCGAGCAATGCACCATATAGGACCTGTACAAATAAAACTGCTAAATATTTTAGGGGTTATTGGCCCATGCCTTATACAGAAAAATTAATCCTCAGAGCTGCTCAAAGATTGTATTATCTTGTACTTGATACCCCTCCTTTTACAGTGATTAAAGAGCTCCTTTCTATTCACATAATGCTTCATATCTACCATACCATACCTGAATGTTCACTTATTAGCACCTGAATTAGGAATAAAGTGGATGATTGATGGGAATGAGATATTCCTTTTTTTGCTTTTATTTTTAGACCGTTATTGATTCGCTATCATAATGCCTCATATTCACTACAATGTTGACAATCCGATAGCCGGCATCATAGCTTTCAGACTGATCTTATCCATGAGTGATGAGTAGACAACAAAATACCCCGCTATTCAGGCTTAATGATTATTCTATAAACTGAGCAAATGTGAAACGCAGAACCGCTTGATGCCAAGTTACCCCCGGACTTTTCCAAATTAAAAGCACAGTCCAAAGGAATACTCCCTTTATACCCACCCTTGCTAGTCGAACAACACATTGCACAATCCCCAGTTTTTCGCAACTACCACAGTCGGGTGCACCGTCCCCCCTCTTTGCCTAGATCCACTTCAATTCTGACAGGGAATAAACT]




>consensus_2999#0
AAGGGGATAGTTACATGGGATATGCATTAGAACAAATTATTGCGGCAGACTTATGATGCT
GAAGACTTATTAATTTTGACAGTGAGTAAAGATAGCCCAGCACTAACACTTGGTAGGTAA
TGAATAGAATAACATATACTGAGTCATTATACGTTGATGTTCGAGCAATGCACCATATAG
GACCTGTACAAATAAAACTGCTAAATATTTTAGGGGTTATTGGCCCATGCCTTATACAGA
AAAATTAATCCTCAGAGCTGCTCAAAGATTGTATTATCTTGTACTTGATACCCCTCCTTT
TACAGTGATTAAAGAGCTCCTTTCTATTCACATAATGCTTCATATCTACCATACCATACC
TGAATGTTCACTTATTAGCACCTGAATTAGGAATAAAGTGGATGATTGATGGGAATGAGA
TATTCCTTTTTTTGCTTTTATTTTTAGACCGTTATTGATTCGCTATCATAATGCCTCATA
TTCACTACAATGTTGACAATCCGATAGCCGGCATCATAGCTTTCAGACTGATCTTATCCA
TGAGTGATGAGTAGACAACAAAATACCCCGCTATTCAGGCTTAATGATTATTCTATAAAC
TGAGCAAATGTGAAACGCAGAACCGCTTGATGCCAAGTTACCCCCGGACTTTTCCAAATT
AAAAGCACAGTCCAAAGGAATACTCCCTTTATACCCACCCTTGCTAGTCGAACAACACAT
TGCACAATCCCCAGTTTTTCGCAACTACCACAGTCGGGTGCACCGTCCCCCCTCTTTGCC
TAGATCCACTTCAATTCTGACAGGGAATAAACT

consensusID : consensus_2999#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 411
fasta sequence

                              [AAGGGGATAGTTACATGGTATATGCATTAGAACAAAATTATTGCGGCAGAATATGTTGCTGAAACTTATTAATTTTGTGATTGTGTAAAGTTGGAGCAGTCCTAACACTTGATAGGTAATGAATAGAATAACATATACTGAATCATTATTTGTTGATGTTCGTGCAATGCAAATCAGAGGACCTGTACAAATAAATATGCGAAATATTTTTGGTGTTATTGTCCCATGTCTTCTAGTGATAAATTAATCCTCAAAGTTCCTCAAAGTTTGTTTATCTTGTACTTGATCTCCCTCCTTTTCAGGGCATTAGAGTGTTCCTTTTTATTCACAAATCCTTCAAATCTACCATACCATACCTGAAATTCACTTATTAGCACCTGAATTTGGAATAATGTGGATGATTTATGGGAA]

[+] EMBL CB096661             [AAGGGGATAGTTACATGGTATATGCATTAGAACAAAATTATTGCGGCAGAATATGTTGCTGAAACTTATTAATTTTGTGATTGTGTAAAGTTGGAGCAGTCCTAACACTTGATAGGTAATGAATAGAATAACATATACTGAATCATTATTTGTTGATGTTCGTGCAATGCAAATCAGAGGACCTGTACAAATAAATATGCGAAATATTTTTGGTGTTATTGTCCCATGTCTTCTAGTGATAAATTAATCCTCAAAGTTCCTCAAAGTTTGTTTATCTTGTACTTGATCTCCCTCCTTTTCAGGGCATTAGAGTGTTCCTTTTTATTCACAAATCCTTCAAATCTACCATACCATACCTGAAATTCACTTATTAGCACCTGAATTTGGAATAATGTGGATGATTTATGGGAA]




>consensus_2999#1
AAGGGGATAGTTACATGGTATATGCATTAGAACAAAATTATTGCGGCAGAATATGTTGCT
GAAACTTATTAATTTTGTGATTGTGTAAAGTTGGAGCAGTCCTAACACTTGATAGGTAAT
GAATAGAATAACATATACTGAATCATTATTTGTTGATGTTCGTGCAATGCAAATCAGAGG
ACCTGTACAAATAAATATGCGAAATATTTTTGGTGTTATTGTCCCATGTCTTCTAGTGAT
AAATTAATCCTCAAAGTTCCTCAAAGTTTGTTTATCTTGTACTTGATCTCCCTCCTTTTC
AGGGCATTAGAGTGTTCCTTTTTATTCACAAATCCTTCAAATCTACCATACCATACCTGA
AATTCACTTATTAGCACCTGAATTTGGAATAATGTGGATGATTTATGGGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2999#0      AAGGGGATAGTTACATGGGATATGCATTAGAACAAA-TTATTGCGGCAGACTTATGATGC 59
consensus_2999#1      AAGGGGATAGTTACATGGTATATGCATTAGAACAAAATTATTGCGGCAGAAT-ATGTTGC 59
                      ****************** ***************** ************* * *** ***

consensus_2999#0      TGAAGACTTATTAATTTTGACAGTGAGTAAAGATAGCCCAGCACTAACACTTGGTAGGTA 119
consensus_2999#1      TGAA-ACTTATTAATTTTGTGATTGTGTAAAGTTGGAGCAGTCCTAACACTTGATAGGTA 118
                      **** **************  * ** ****** * *  ***  ********** ******

consensus_2999#0      ATGAATAGAATAACATATACTGAGTCATTATACGTTGATGTTCGAGCAATGCACCATATA 179
consensus_2999#1      ATGAATAGAATAACATATACTGAATCATTATTTGTTGATGTTCGTGCAATGCAAATCAGA 178
                      *********************** *******  *********** ********    * *

consensus_2999#0      GGACCTGTACAAATAAAACTGCTAAATATTTTAGGGGTTATTGGCCCATGCCTTATACAG 239
consensus_2999#1      GGACCTGTACAAATAAATATGCGAAATATTTTTGGTGTTATTGTCCCATGTCTTCTAGTG 238
                      *****************  *** ********* ** ******* ****** *** **  *

consensus_2999#0      AAAAATTAATCCTCAGAGCTGCTCAAAGATTGTATTATCTTGTACTTGATACCCCTCCTT 299
consensus_2999#1      ATAAATTAATCCTCAAAGTTCCTCAAAGTTTGT-TTATCTTGTACTTGATCTCCCTCCTT 297
                      * ************* ** * ******* **** ****************  ********

consensus_2999#0      TTACAGTGATTAAAGAGCTCCTTTCTATTCACATAATGCTTCATATCTACCATACCATAC 359
consensus_2999#1      TTCAGGGCATTAGAGTGTTCCTTTTTATTCACA-AATCCTTCAAATCTACCATACCATAC 356
                      **   *  **** ** * ****** ******** *** ***** ****************

consensus_2999#0      CTGAATGTTCACTTATTAGCACCTGAATTAGGAATAAAGTGGATGATTGATGGGAATGAG 419
consensus_2999#1      CTGAA-ATTCACTTATTAGCACCTGAATTTGGAATAATGTGGATGATTTATGGGAA---- 411
                      *****  ********************** ******* ********** *******    

consensus_2999#0      ATATTCCTTTTTTTGCTTTTATTTTTAGACCGTTATTGATTCGCTATCATAATGCCTCAT 479
consensus_2999#1      ------------------------------------------------------------
                                                                                  

consensus_2999#0      ATTCACTACAATGTTGACAATCCGATAGCCGGCATCATAGCTTTCAGACTGATCTTATCC 539
consensus_2999#1      ------------------------------------------------------------
                                                                                  

consensus_2999#0      ATGAGTGATGAGTAGACAACAAAATACCCCGCTATTCAGGCTTAATGATTATTCTATAAA 599
consensus_2999#1      ------------------------------------------------------------
                                                                                  

consensus_2999#0      CTGAGCAAATGTGAAACGCAGAACCGCTTGATGCCAAGTTACCCCCGGACTTTTCCAAAT 659
consensus_2999#1      ------------------------------------------------------------
                                                                                  

consensus_2999#0      TAAAAGCACAGTCCAAAGGAATACTCCCTTTATACCCACCCTTGCTAGTCGAACAACACA 719
consensus_2999#1      ------------------------------------------------------------
                                                                                  

consensus_2999#0      TTGCACAATCCCCAGTTTTTCGCAACTACCACAGTCGGGTGCACCGTCCCCCCTCTTTGC 779
consensus_2999#1      ------------------------------------------------------------
                                                                                  

consensus_2999#0      CTAGATCCACTTCAATTCTGACAGGGAATAAACT 813
consensus_2999#1      ----------------------------------