cluster # 3008

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Oryza sativa
cluster # 3008 cluster # 3008 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3008#0 length = 585 sequences # 1

consensus_3008#1 length = 490 sequences # 1

consensusID : consensus_3008#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence

                              [GGGGCTTCTTCCCGCTCTACAACGCCGTGTTCACCTTCCCGCTCGAGCGCCCCATGCTGGTGAAGGAGAGGTCGTCGGGGATGTACCGCCTCTCCTCCTACTTCGCCGCGCGCACCGCCGCCGACCTACCCATGGAGCTCGCCCTCCCCACCGCCTTCGTCGTCATCCTCTACTGGATGGGCGGCCTCGACCCGCGCCCTGGCCCCTTCCTCCTCTCCCTCCTCGTCGTCCTCTACAGCGTCCTCGTCGCCCAGAGCCTCGGGCTCGCCATTGGCGCCGTGCTCATGGACGTCAAGCAGGGCACCACCCTCGCCTCCGTCATCACCATGGTCTTCCTCATCGCCGGCGGCTACTACGTCCAGCACATCCCGCCCTTCGTCGGCTGGCTCCGGTGGCTCAACTACAGCTTCTACTGCTACCGCCTCCTCATCGGCATCCAGTTCGGCGACGGCGCCGCCCACTACGACTGCGGCGGCGGCGGCGCGCGCTGCCTCGTCGCCGACTTCCCGGCCATCAAGGCCGTCGGGATCAACAACCACTGGGTCGACGTCTGCGTCATGGNGCTCCTCCTCGTCGGCTAACGCG]

[+] EMBL AU162766             [GGGGCTTCTTCCCGCTCTACAACGCCGTGTTCACCTTCCCGCTCGAGCGCCCCATGCTGGTGAAGGAGAGGTCGTCGGGGATGTACCGCCTCTCCTCCTACTTCGCCGCGCGCACCGCCGCCGACCTACCCATGGAGCTCGCCCTCCCCACCGCCTTCGTCGTCATCCTCTACTGGATGGGCGGCCTCGACCCGCGCCCTGGCCCCTTCCTCCTCTCCCTCCTCGTCGTCCTCTACAGCGTCCTCGTCGCCCAGAGCCTCGGGCTCGCCATTGGCGCCGTGCTCATGGACGTCAAGCAGGGCACCACCCTCGCCTCCGTCATCACCATGGTCTTCCTCATCGCCGGCGGCTACTACGTCCAGCACATCCCGCCCTTCGTCGGCTGGCTCCGGTGGCTCAACTACAGCTTCTACTGCTACCGCCTCCTCATCGGCATCCAGTTCGGCGACGGCGCCGCCCACTACGACTGCGGCGGCGGCGGCGCGCGCTGCCTCGTCGCCGACTTCCCGGCCATCAAGGCCGTCGGGATCAACAACCACTGGGTCGACGTCTGCGTCATGGNGCTCCTCCTCGTCGGCTAACGCG]




>consensus_3008#0
GGGGCTTCTTCCCGCTCTACAACGCCGTGTTCACCTTCCCGCTCGAGCGCCCCATGCTGG
TGAAGGAGAGGTCGTCGGGGATGTACCGCCTCTCCTCCTACTTCGCCGCGCGCACCGCCG
CCGACCTACCCATGGAGCTCGCCCTCCCCACCGCCTTCGTCGTCATCCTCTACTGGATGG
GCGGCCTCGACCCGCGCCCTGGCCCCTTCCTCCTCTCCCTCCTCGTCGTCCTCTACAGCG
TCCTCGTCGCCCAGAGCCTCGGGCTCGCCATTGGCGCCGTGCTCATGGACGTCAAGCAGG
GCACCACCCTCGCCTCCGTCATCACCATGGTCTTCCTCATCGCCGGCGGCTACTACGTCC
AGCACATCCCGCCCTTCGTCGGCTGGCTCCGGTGGCTCAACTACAGCTTCTACTGCTACC
GCCTCCTCATCGGCATCCAGTTCGGCGACGGCGCCGCCCACTACGACTGCGGCGGCGGCG
GCGCGCGCTGCCTCGTCGCCGACTTCCCGGCCATCAAGGCCGTCGGGATCAACAACCACT
GGGTCGACGTCTGCGTCATGGNGCTCCTCCTCGTCGGCTAACGCG

consensusID : consensus_3008#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 490
fasta sequence

                              [GGCCGCCGCGCCGTTGCCCTCGTCGCCCGACTTNCCCGGCCATCAAGGCCCGTCGGGGCTCAAACAACCACTGGGGTCGACGTCTGCGTCATGGCGCTCCTCCTCGTCGGCTACCGCGTCATCGCCTACCTCGCCTTGGACCGCCTCAAGCCAAGGTGAAGCTCGCCGTCGCCATCGCCATCGCCGGCGGCGTCAGCTATCCAAGTATCCATCTAGCTAGAGCTGCTGATCCATCCAAGACAAGAACAAGAAGGGTCAATTAATGATTAACCCTGGAAAATTAAGTTTCATTTCTTCTTAATTTTCTTGGATGGATGCTGCTGCTTCACCCAGAGAGTTTATAGCTTAATCGAGTGATTAATTAATGAAGAGAGTTAATTAATTAAGTATAAGAGAGCAGAGATGAGATGATGACATGTTCCATCATGTAATAATAACTAGTGCTAGTAAAGGGAGTTGGAACCCTCAACCCTGTACAATACAAGAACAC]

[+] EMBL AU057660             [GGCCGCCGCGCCGTTGCCCTCGTCGCCCGACTTNCCCGGCCATCAAGGCCCGTCGGGGCTCAAACAACCACTGGGGTCGACGTCTGCGTCATGGCGCTCCTCCTCGTCGGCTACCGCGTCATCGCCTACCTCGCCTTGGACCGCCTCAAGCCAAGGTGAAGCTCGCCGTCGCCATCGCCATCGCCGGCGGCGTCAGCTATCCAAGTATCCATCTAGCTAGAGCTGCTGATCCATCCAAGACAAGAACAAGAAGGGTCAATTAATGATTAACCCTGGAAAATTAAGTTTCATTTCTTCTTAATTTTCTTGGATGGATGCTGCTGCTTCACCCAGAGAGTTTATAGCTTAATCGAGTGATTAATTAATGAAGAGAGTTAATTAATTAAGTATAAGAGAGCAGAGATGAGATGATGACATGTTCCATCATGTAATAATAACTAGTGCTAGTAAAGGGAGTTGGAACCCTCAACCCTGTACAATACAAGAACAC]




>consensus_3008#1
GGCCGCCGCGCCGTTGCCCTCGTCGCCCGACTTNCCCGGCCATCAAGGCCCGTCGGGGCT
CAAACAACCACTGGGGTCGACGTCTGCGTCATGGCGCTCCTCCTCGTCGGCTACCGCGTC
ATCGCCTACCTCGCCTTGGACCGCCTCAAGCCAAGGTGAAGCTCGCCGTCGCCATCGCCA
TCGCCGGCGGCGTCAGCTATCCAAGTATCCATCTAGCTAGAGCTGCTGATCCATCCAAGA
CAAGAACAAGAAGGGTCAATTAATGATTAACCCTGGAAAATTAAGTTTCATTTCTTCTTA
ATTTTCTTGGATGGATGCTGCTGCTTCACCCAGAGAGTTTATAGCTTAATCGAGTGATTA
ATTAATGAAGAGAGTTAATTAATTAAGTATAAGAGAGCAGAGATGAGATGATGACATGTT
CCATCATGTAATAATAACTAGTGCTAGTAAAGGGAGTTGGAACCCTCAACCCTGTACAAT
ACAAGAACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3008#0      GGGGCTTCTTCCCGCTCTACAACGCCGTGTTCACCTTCCCGCTCGAGCGCCCCATGCTGG 60
consensus_3008#1      --------------GGCCGCCGCGCCG--TTGCCCTCGTCGCCCGACTTNCCCGGCC--- 41
                                      *  *  *****  **  ***   *** ***    ***   *   

consensus_3008#0      TGAAGGAGAGGTCGTCGGGGATGTACCGCCTCTCCTCCTACTTCGCCGCGCGCACCGCCG 120
consensus_3008#1      ---ATCAAGGCCCGTCGGGGCTCAAACAAC----CACTGGGGTCGACGTCTGCGTCATGG 94
                         *  *  *  ******** *  * *  *    * *     *** **   **  *   *

consensus_3008#0      CCGACCTACCCATGGAGCTCGCCCTCCCCACCGCCTTCGTCGTCATCCTCTACTGGATGG 180
consensus_3008#1      CGCTCCTCCTCGTCGG---CTACCGCGTCATCGCCTACCTCGCCTTGGACCGCCTCAAGC 151
                      *   *** * * * *    *  ** *  ** ***** * *** * *   *  *   * * 

consensus_3008#0      GCGGCCTCGACCCGCGCCCTGGCCCCTTCCTCCTCTCCCTCCTCGTCGTCCTCTACAGCG 240
consensus_3008#1      CAAGGTGAAGCTCGC----CGTCGCCATCGCCATCGCCGGCGGCGTCAGCTATCCAAGTA 207
                         *      * ***     * * ** **  * ** **  *  ****  *      **  

consensus_3008#0      TCCTCGTCGCCCAGAGCCTCGGGCTCGCCATTGGCGCCGTGCTCATGGACGTCAAGCAGG 300
consensus_3008#1      TCCATCTAGCT-AGAGCTGCTGAT---CCATCCAAGACAAGAACAAGAAGGGTCAATTAA 263
                      ***   * **  *****  * *     ****    * *  *  ** * * *   *     

consensus_3008#0      GCACCACCCTCGCCTCCGTCATCACCATGGTCTTCCTCATCGCCGGCGGCTACTACGTCC 360
consensus_3008#1      TGATTAACCCTGGAAAATTAAGTTTCATT-TCTTCTTAATTTTCTTGGATGGATGCTGCT 322
                        *  * **  *      * *    ***  ***** * **   *   *     * *  * 

consensus_3008#0      AGCACATCCCGCCCTTCGTCGGCTGGCTCCGGTGGCTCAACTACAGCTTCTACTGCTACC 420
consensus_3008#1      GCTTCACCCAGAGAGTTTATAGCTTAATCGAGTGATTAATTAATGAAGAGAGTTA--ATT 380
                          ** ** *    *     ***   **  ***  * *   *          *   *  

consensus_3008#0      GCCTCCTCATCGGCATCCAGTTCGGCGACGGCGCCGCCCACTACGACTGCGGCGGCGGCG 480
consensus_3008#1      AATTAAGTATAAGAGAGCAGAGATGAGATGATGACATGTTCCATCAT----GTAATAATA 436
                         *    **  *    ***    * ** *  * *     * *  *     *        

consensus_3008#0      GCGCGCGCTGCCTCGTCGCCGACTTCCCGGCCATCAAGGCCGTCGGGATCAACAACCACT 540
consensus_3008#1      ACTAGTGCTA----GTAAAGGGAGTTGGAACCCTCAACCCTGTACAATACAAGAAC-AC- 490
                       *  * ***     **    *   *     ** ****  * **      *** *** ** 

consensus_3008#0      GGGTCGACGTCTGCGTCATGGNGCTCCTCCTCGTCGGCTAACGCG 585
consensus_3008#1      ---------------------------------------------