These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3008#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [GGGGCTTCTTCCCGCTCTACAACGCCGTGTTCACCTTCCCGCTCGAGCGCCCCATGCTGGTGAAGGAGAGGTCGTCGGGGATGTACCGCCTCTCCTCCTACTTCGCCGCGCGCACCGCCGCCGACCTACCCATGGAGCTCGCCCTCCCCACCGCCTTCGTCGTCATCCTCTACTGGATGGGCGGCCTCGACCCGCGCCCTGGCCCCTTCCTCCTCTCCCTCCTCGTCGTCCTCTACAGCGTCCTCGTCGCCCAGAGCCTCGGGCTCGCCATTGGCGCCGTGCTCATGGACGTCAAGCAGGGCACCACCCTCGCCTCCGTCATCACCATGGTCTTCCTCATCGCCGGCGGCTACTACGTCCAGCACATCCCGCCCTTCGTCGGCTGGCTCCGGTGGCTCAACTACAGCTTCTACTGCTACCGCCTCCTCATCGGCATCCAGTTCGGCGACGGCGCCGCCCACTACGACTGCGGCGGCGGCGGCGCGCGCTGCCTCGTCGCCGACTTCCCGGCCATCAAGGCCGTCGGGATCAACAACCACTGGGTCGACGTCTGCGTCATGGNGCTCCTCCTCGTCGGCTAACGCG] [+] EMBL AU162766 [GGGGCTTCTTCCCGCTCTACAACGCCGTGTTCACCTTCCCGCTCGAGCGCCCCATGCTGGTGAAGGAGAGGTCGTCGGGGATGTACCGCCTCTCCTCCTACTTCGCCGCGCGCACCGCCGCCGACCTACCCATGGAGCTCGCCCTCCCCACCGCCTTCGTCGTCATCCTCTACTGGATGGGCGGCCTCGACCCGCGCCCTGGCCCCTTCCTCCTCTCCCTCCTCGTCGTCCTCTACAGCGTCCTCGTCGCCCAGAGCCTCGGGCTCGCCATTGGCGCCGTGCTCATGGACGTCAAGCAGGGCACCACCCTCGCCTCCGTCATCACCATGGTCTTCCTCATCGCCGGCGGCTACTACGTCCAGCACATCCCGCCCTTCGTCGGCTGGCTCCGGTGGCTCAACTACAGCTTCTACTGCTACCGCCTCCTCATCGGCATCCAGTTCGGCGACGGCGCCGCCCACTACGACTGCGGCGGCGGCGGCGCGCGCTGCCTCGTCGCCGACTTCCCGGCCATCAAGGCCGTCGGGATCAACAACCACTGGGTCGACGTCTGCGTCATGGNGCTCCTCCTCGTCGGCTAACGCG] consensusID : consensus_3008#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence [GGCCGCCGCGCCGTTGCCCTCGTCGCCCGACTTNCCCGGCCATCAAGGCCCGTCGGGGCTCAAACAACCACTGGGGTCGACGTCTGCGTCATGGCGCTCCTCCTCGTCGGCTACCGCGTCATCGCCTACCTCGCCTTGGACCGCCTCAAGCCAAGGTGAAGCTCGCCGTCGCCATCGCCATCGCCGGCGGCGTCAGCTATCCAAGTATCCATCTAGCTAGAGCTGCTGATCCATCCAAGACAAGAACAAGAAGGGTCAATTAATGATTAACCCTGGAAAATTAAGTTTCATTTCTTCTTAATTTTCTTGGATGGATGCTGCTGCTTCACCCAGAGAGTTTATAGCTTAATCGAGTGATTAATTAATGAAGAGAGTTAATTAATTAAGTATAAGAGAGCAGAGATGAGATGATGACATGTTCCATCATGTAATAATAACTAGTGCTAGTAAAGGGAGTTGGAACCCTCAACCCTGTACAATACAAGAACAC] [+] EMBL AU057660 [GGCCGCCGCGCCGTTGCCCTCGTCGCCCGACTTNCCCGGCCATCAAGGCCCGTCGGGGCTCAAACAACCACTGGGGTCGACGTCTGCGTCATGGCGCTCCTCCTCGTCGGCTACCGCGTCATCGCCTACCTCGCCTTGGACCGCCTCAAGCCAAGGTGAAGCTCGCCGTCGCCATCGCCATCGCCGGCGGCGTCAGCTATCCAAGTATCCATCTAGCTAGAGCTGCTGATCCATCCAAGACAAGAACAAGAAGGGTCAATTAATGATTAACCCTGGAAAATTAAGTTTCATTTCTTCTTAATTTTCTTGGATGGATGCTGCTGCTTCACCCAGAGAGTTTATAGCTTAATCGAGTGATTAATTAATGAAGAGAGTTAATTAATTAAGTATAAGAGAGCAGAGATGAGATGATGACATGTTCCATCATGTAATAATAACTAGTGCTAGTAAAGGGAGTTGGAACCCTCAACCCTGTACAATACAAGAACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3008#0 GGGGCTTCTTCCCGCTCTACAACGCCGTGTTCACCTTCCCGCTCGAGCGCCCCATGCTGG 60 consensus_3008#1 --------------GGCCGCCGCGCCG--TTGCCCTCGTCGCCCGACTTNCCCGGCC--- 41 * * ***** ** *** *** *** *** * consensus_3008#0 TGAAGGAGAGGTCGTCGGGGATGTACCGCCTCTCCTCCTACTTCGCCGCGCGCACCGCCG 120 consensus_3008#1 ---ATCAAGGCCCGTCGGGGCTCAAACAAC----CACTGGGGTCGACGTCTGCGTCATGG 94 * * * ******** * * * * * * *** ** ** * * consensus_3008#0 CCGACCTACCCATGGAGCTCGCCCTCCCCACCGCCTTCGTCGTCATCCTCTACTGGATGG 180 consensus_3008#1 CGCTCCTCCTCGTCGG---CTACCGCGTCATCGCCTACCTCGCCTTGGACCGCCTCAAGC 151 * *** * * * * * ** * ** ***** * *** * * * * * * consensus_3008#0 GCGGCCTCGACCCGCGCCCTGGCCCCTTCCTCCTCTCCCTCCTCGTCGTCCTCTACAGCG 240 consensus_3008#1 CAAGGTGAAGCTCGC----CGTCGCCATCGCCATCGCCGGCGGCGTCAGCTATCCAAGTA 207 * * *** * * ** ** * ** ** * **** * ** consensus_3008#0 TCCTCGTCGCCCAGAGCCTCGGGCTCGCCATTGGCGCCGTGCTCATGGACGTCAAGCAGG 300 consensus_3008#1 TCCATCTAGCT-AGAGCTGCTGAT---CCATCCAAGACAAGAACAAGAAGGGTCAATTAA 263 *** * ** ***** * * **** * * * ** * * * * consensus_3008#0 GCACCACCCTCGCCTCCGTCATCACCATGGTCTTCCTCATCGCCGGCGGCTACTACGTCC 360 consensus_3008#1 TGATTAACCCTGGAAAATTAAGTTTCATT-TCTTCTTAATTTTCTTGGATGGATGCTGCT 322 * * ** * * * *** ***** * ** * * * * * consensus_3008#0 AGCACATCCCGCCCTTCGTCGGCTGGCTCCGGTGGCTCAACTACAGCTTCTACTGCTACC 420 consensus_3008#1 GCTTCACCCAGAGAGTTTATAGCTTAATCGAGTGATTAATTAATGAAGAGAGTTA--ATT 380 ** ** * * *** ** *** * * * * * consensus_3008#0 GCCTCCTCATCGGCATCCAGTTCGGCGACGGCGCCGCCCACTACGACTGCGGCGGCGGCG 480 consensus_3008#1 AATTAAGTATAAGAGAGCAGAGATGAGATGATGACATGTTCCATCAT----GTAATAATA 436 * ** * *** * ** * * * * * * * consensus_3008#0 GCGCGCGCTGCCTCGTCGCCGACTTCCCGGCCATCAAGGCCGTCGGGATCAACAACCACT 540 consensus_3008#1 ACTAGTGCTA----GTAAAGGGAGTTGGAACCCTCAACCCTGTACAATACAAGAAC-AC- 490 * * *** ** * * ** **** * ** *** *** ** consensus_3008#0 GGGTCGACGTCTGCGTCATGGNGCTCCTCCTCGTCGGCTAACGCG 585 consensus_3008#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||