cluster # 3022

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Oryza sativa
cluster # 3022 cluster # 3022 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3022#0 length = 421 sequences # 1

consensus_3022#1 length = 380 sequences # 1

consensusID : consensus_3022#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 421
fasta sequence

                              [AGGAAGAAGCAAAGCACGGGCACCGGTGGAAGCGAANNANAGTGAAAGCATAGAGAGAAGAGAAGAGCCATGCCCCATCTCGCCGCCTCCCCCACCTCCGCCGCCGCCGCCGCCCCTGCCTCCGCCCGCGTTGCCTTCCTGCGCCCTGGCCGCGTCCCCCGCCCGCCGCTGCAGACAGCGCGTGGCCTTCGCCCGGACTTGGGCACCCTGCGCACGGCGGANAGCCCACGTTGTACGACCTACTCGGGATCTCCTCGGAGGGCACCCTCGACGAGGTCCGCGCGGCCTACAGGCGGATGGCGCGCAAGTACAATCCGGACGTTTGGCGGCCGATGCGGCGCCGAGAAAACCGGCGGTTNAATCGAGTNCAAGAAGGCTTACGAAAAGTTTTTCGAACCAAGCGGCGGGGCAACTAAGAACG]

[+] EMBL AU163586             [AGGAAGAAGCAAAGCACGGGCACCGGTGGAAGCGAANNANAGTGAAAGCATAGAGAGAAGAGAAGAGCCATGCCCCATCTCGCCGCCTCCCCCACCTCCGCCGCCGCCGCCGCCCCTGCCTCCGCCCGCGTTGCCTTCCTGCGCCCTGGCCGCGTCCCCCGCCCGCCGCTGCAGACAGCGCGTGGCCTTCGCCCGGACTTGGGCACCCTGCGCACGGCGGANAGCCCACGTTGTACGACCTACTCGGGATCTCCTCGGAGGGCACCCTCGACGAGGTCCGCGCGGCCTACAGGCGGATGGCGCGCAAGTACAATCCGGACGTTTGGCGGCCGATGCGGCGCCGAGAAAACCGGCGGTTNAATCGAGTNCAAGAAGGCTTACGAAAAGTTTTTCGAACCAAGCGGCGGGGCAACTAAGAACG]




>consensus_3022#0
AGGAAGAAGCAAAGCACGGGCACCGGTGGAAGCGAANNANAGTGAAAGCATAGAGAGAAG
AGAAGAGCCATGCCCCATCTCGCCGCCTCCCCCACCTCCGCCGCCGCCGCCGCCCCTGCC
TCCGCCCGCGTTGCCTTCCTGCGCCCTGGCCGCGTCCCCCGCCCGCCGCTGCAGACAGCG
CGTGGCCTTCGCCCGGACTTGGGCACCCTGCGCACGGCGGANAGCCCACGTTGTACGACC
TACTCGGGATCTCCTCGGAGGGCACCCTCGACGAGGTCCGCGCGGCCTACAGGCGGATGG
CGCGCAAGTACAATCCGGACGTTTGGCGGCCGATGCGGCGCCGAGAAAACCGGCGGTTNA
ATCGAGTNCAAGAAGGCTTACGAAAAGTTTTTCGAACCAAGCGGCGGGGCAACTAAGAAC
G

consensusID : consensus_3022#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence

                              [AGGAAGAAGCAAAGCACGGGCACCGGTGGAAGCGAAGCGAAAGTGAAAGCATAGAGAGAAGAGAAGAGCCATGCCCCATCTCGCCGCCTCCCCCACCTCCGCCGCCGCCGCCGCCCCTGCCTCCGCCCGCGTTGCCTTCCTGCGCCCTGGCCGCGTCCCCCGCCCGCCGCTGCAGACAGCGCGTGGCCTTCGCCCGGACTTGGGCACCCTGCGCACGGCGGAGCAGCCCACGTTGTACGACCTATTCGGGATCTCCTNGGAGGGCACCCTTGACGAGGTCCGCGCGGNCTACAGGCGGATTGGGGCGCAAGTACCATTCCGGACGTTTTTGCCGGCCGAACGCCGCCGNCGAAAAAACCCGCCGGTTTATTGAGGGGCAN]

[+] EMBL AU172532             [AGGAAGAAGCAAAGCACGGGCACCGGTGGAAGCGAAGCGAAAGTGAAAGCATAGAGAGAAGAGAAGAGCCATGCCCCATCTCGCCGCCTCCCCCACCTCCGCCGCCGCCGCCGCCCCTGCCTCCGCCCGCGTTGCCTTCCTGCGCCCTGGCCGCGTCCCCCGCCCGCCGCTGCAGACAGCGCGTGGCCTTCGCCCGGACTTGGGCACCCTGCGCACGGCGGAGCAGCCCACGTTGTACGACCTATTCGGGATCTCCTNGGAGGGCACCCTTGACGAGGTCCGCGCGGNCTACAGGCGGATTGGGGCGCAAGTACCATTCCGGACGTTTTTGCCGGCCGAACGCCGCCGNCGAAAAAACCCGCCGGTTTATTGAGGGGCAN]




>consensus_3022#1
AGGAAGAAGCAAAGCACGGGCACCGGTGGAAGCGAAGCGAAAGTGAAAGCATAGAGAGAA
GAGAAGAGCCATGCCCCATCTCGCCGCCTCCCCCACCTCCGCCGCCGCCGCCGCCCCTGC
CTCCGCCCGCGTTGCCTTCCTGCGCCCTGGCCGCGTCCCCCGCCCGCCGCTGCAGACAGC
GCGTGGCCTTCGCCCGGACTTGGGCACCCTGCGCACGGCGGAGCAGCCCACGTTGTACGA
CCTATTCGGGATCTCCTNGGAGGGCACCCTTGACGAGGTCCGCGCGGNCTACAGGCGGAT
TGGGGCGCAAGTACCATTCCGGACGTTTTTGCCGGCCGAACGCCGCCGNCGAAAAAACCC
GCCGGTTTATTGAGGGGCAN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3022#0      AGGAAGAAGCAAAGCACGGGCACCGGTGGAAGCGAANN-ANAGTGAAAGCATAGAGAGAA 59
consensus_3022#1      AGGAAGAAGCAAAGCACGGGCACCGGTGGAAGCGAAGCGAAAGTGAAAGCATAGAGAGAA 60
                      ************************************   * *******************

consensus_3022#0      GAGAAGAGCCATGCCCCATCTCGCCGCCTCCCCCACCTCCGCCGCCGCCGCCGCCCCTGC 119
consensus_3022#1      GAGAAGAGCCATGCCCCATCTCGCCGCCTCCCCCACCTCCGCCGCCGCCGCCGCCCCTGC 120
                      ************************************************************

consensus_3022#0      CTCCGCCCGCGTTGCCTTCCTGCGCCCTGGCCGCGTCCCCCGCCCGCCGCTGCAGACAGC 179
consensus_3022#1      CTCCGCCCGCGTTGCCTTCCTGCGCCCTGGCCGCGTCCCCCGCCCGCCGCTGCAGACAGC 180
                      ************************************************************

consensus_3022#0      GCGTGGCCTTCGCCCGGACTTGGGCACCCTGCGCACGGCGGAN-AGCCCACGTTGTACGA 238
consensus_3022#1      GCGTGGCCTTCGCCCGGACTTGGGCACCCTGCGCACGGCGGAGCAGCCCACGTTGTACGA 240
                      ******************************************  ****************

consensus_3022#0      CCTACTCGGGATCTCCTCGGAGGGCACCCTCGACGAGGTCCGCGCGGCCTACAGGCGGAT 298
consensus_3022#1      CCTATTCGGGATCTCCTNGGAGGGCACCCTTGACGAGGTCCGCGCGGNCTACAGGCGGAT 300
                      **** ************ ************ **************** ************

consensus_3022#0      -GGCGCGCAAGTACAAT-CCGGACGTTT--GGCGGCCGATG--CGGCGCCGAGAAAACCG 352
consensus_3022#1      TGGGGCGCAAGTACCATTCCGGACGTTTTTGCCGGCCGAACGCCGCCGNCGAAAAAACCC 360
                       ** ********** ** **********  * *******    ** ** *** ****** 

consensus_3022#0      GCGGTTNAATCGAGTNCAAGAAGGCTTACGAAAAGTTTTTCGAACCAAGCGGCGGGGCAA 412
consensus_3022#1      GCCGGTTTATTGAGGGGCAN---------------------------------------- 380
                      ** * *  ** ***    *                                         

consensus_3022#0      CTAAGAACG 421
consensus_3022#1      ---------