cluster # 3031

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Oryza sativa
cluster # 3031 cluster # 3031 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3031#0 length = 547 sequences # 1

consensus_3031#1 length = 432 sequences # 1

consensusID : consensus_3031#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 547
fasta sequence

                              [CCTTCNTCCTCCCCTCACCTGGAGATAGATTTTACACAGATCCTCCCATTCCTCNTTCCTTCCCCTCCCCTTCCTCTTCCCTCACCTGGAGATGGAGAAGGCCGCGCCGCGCGGACGCGGTAGACGGACGCGCAGTGTGCGGCGCAGACGTGTGTTGCAGGGGAAGCACATGCGCGCAGTAGTAATGGTAGCGGTAGCCGGCAGTAGTGGGATTGATATTTCGTGATTGATTTCTTGAGTAGTAGCAGTAGTAGCGGTTGTGGGATTGTTGCAAGGGAAGCACATGCGCGCAGTAGTAACGGTAGCAGCAGCCAGCAGTAGTGGGATTGATATTTTGTGATTGATTTCTTGAGAAGTAGCAGTAGTAGCGGTTGTGGGATTGATTTCTTGAGTAGTAGGATTGATTTCTTGAGTGGTTGTGGGATTGATTTCTTGAGTAGTAGCACTAGTAGCGGCATCCGGCAGCTTGTTTTCTCTCTCTTTATATTTTTTTGATATTTTGTGATTCACTAAGATGTATAATTTTGTGAATCACAAAATATCAAAA]

[+] EMBL AU082633             [CCTTCNTCCTCCCCTCACCTGGAGATAGATTTTACACAGATCCTCCCATTCCTCNTTCCTTCCCCTCCCCTTCCTCTTCCCTCACCTGGAGATGGAGAAGGCCGCGCCGCGCGGACGCGGTAGACGGACGCGCAGTGTGCGGCGCAGACGTGTGTTGCAGGGGAAGCACATGCGCGCAGTAGTAATGGTAGCGGTAGCCGGCAGTAGTGGGATTGATATTTCGTGATTGATTTCTTGAGTAGTAGCAGTAGTAGCGGTTGTGGGATTGTTGCAAGGGAAGCACATGCGCGCAGTAGTAACGGTAGCAGCAGCCAGCAGTAGTGGGATTGATATTTTGTGATTGATTTCTTGAGAAGTAGCAGTAGTAGCGGTTGTGGGATTGATTTCTTGAGTAGTAGGATTGATTTCTTGAGTGGTTGTGGGATTGATTTCTTGAGTAGTAGCACTAGTAGCGGCATCCGGCAGCTTGTTTTCTCTCTCTTTATATTTTTTTGATATTTTGTGATTCACTAAGATGTATAATTTTGTGAATCACAAAATATCAAAA]




>consensus_3031#0
CCTTCNTCCTCCCCTCACCTGGAGATAGATTTTACACAGATCCTCCCATTCCTCNTTCCT
TCCCCTCCCCTTCCTCTTCCCTCACCTGGAGATGGAGAAGGCCGCGCCGCGCGGACGCGG
TAGACGGACGCGCAGTGTGCGGCGCAGACGTGTGTTGCAGGGGAAGCACATGCGCGCAGT
AGTAATGGTAGCGGTAGCCGGCAGTAGTGGGATTGATATTTCGTGATTGATTTCTTGAGT
AGTAGCAGTAGTAGCGGTTGTGGGATTGTTGCAAGGGAAGCACATGCGCGCAGTAGTAAC
GGTAGCAGCAGCCAGCAGTAGTGGGATTGATATTTTGTGATTGATTTCTTGAGAAGTAGC
AGTAGTAGCGGTTGTGGGATTGATTTCTTGAGTAGTAGGATTGATTTCTTGAGTGGTTGT
GGGATTGATTTCTTGAGTAGTAGCACTAGTAGCGGCATCCGGCAGCTTGTTTTCTCTCTC
TTTATATTTTTTTGATATTTTGTGATTCACTAAGATGTATAATTTTGTGAATCACAAAAT
ATCAAAA

consensusID : consensus_3031#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [CCTTCCTCCTCCCTCACCTGGAGATAGATCTTACACAGATCCTCCCATTCCTCCTTCCTTCCCCTCCCCTTCCTCTTCCCTCACCTGGAGATGGAGAAGGCCGCGCCGCGACGCGTANGTACGGACNCGNTTGTGCNGCATGACGTGNTNGTTGCAGGGGAAGCACATGCGCGCAGTAGTAATGGTAGCGGTNCGGCAGTAGTGGGATTGATATTTCGTGATTGATTTCTTGAGTAGTAGCAGTAGTAGCGGTTGTGGGATTGTTGCAAGGGAAGCACATGCGCGCAGTAGTAACGGTAGCAGCAGCCAGCAGTAGTTGGGATTGATATTTTGTGATTGATTTCTTGAGAAGTAGCAGTAGTAGCGGTTGTNGGATTGATTTCTTTAAGTAGTAGGATTGATTTCTTNAGTGGTTTTGGGATTTATTCTTAG]

[+] EMBL C28082               [CCTTCCTCCTCCCTCACCTGGAGATAGATCTTACACAGATCCTCCCATTCCTCCTTCCTTCCCCTCCCCTTCCTCTTCCCTCACCTGGAGATGGAGAAGGCCGCGCCGCGACGCGTANGTACGGACNCGNTTGTGCNGCATGACGTGNTNGTTGCAGGGGAAGCACATGCGCGCAGTAGTAATGGTAGCGGTNCGGCAGTAGTGGGATTGATATTTCGTGATTGATTTCTTGAGTAGTAGCAGTAGTAGCGGTTGTGGGATTGTTGCAAGGGAAGCACATGCGCGCAGTAGTAACGGTAGCAGCAGCCAGCAGTAGTTGGGATTGATATTTTGTGATTGATTTCTTGAGAAGTAGCAGTAGTAGCGGTTGTNGGATTGATTTCTTTAAGTAGTAGGATTGATTTCTTNAGTGGTTTTGGGATTTATTCTTAG]




>consensus_3031#1
CCTTCCTCCTCCCTCACCTGGAGATAGATCTTACACAGATCCTCCCATTCCTCCTTCCTT
CCCCTCCCCTTCCTCTTCCCTCACCTGGAGATGGAGAAGGCCGCGCCGCGACGCGTANGT
ACGGACNCGNTTGTGCNGCATGACGTGNTNGTTGCAGGGGAAGCACATGCGCGCAGTAGT
AATGGTAGCGGTNCGGCAGTAGTGGGATTGATATTTCGTGATTGATTTCTTGAGTAGTAG
CAGTAGTAGCGGTTGTGGGATTGTTGCAAGGGAAGCACATGCGCGCAGTAGTAACGGTAG
CAGCAGCCAGCAGTAGTTGGGATTGATATTTTGTGATTGATTTCTTGAGAAGTAGCAGTA
GTAGCGGTTGTNGGATTGATTTCTTTAAGTAGTAGGATTGATTTCTTNAGTGGTTTTGGG
ATTTATTCTTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3031#0      CCTTCNTCCTCCCCTCACCTGGAGATAGATTTTACACAGATCCTCCCATTCCTCNTTCCT 60
consensus_3031#1      CCTTCCTCCTCCC-TCACCTGGAGATAGATCTTACACAGATCCTCCCATTCCTCCTTCCT 59
                      ***** ******* **************** *********************** *****

consensus_3031#0      TCCCCTCCCCTTCCTCTTCCCTCACCTGGAGATGGAGAAGGCCGCGCCGCGCGGACGCGG 120
consensus_3031#1      TCCCCTCCCCTTCCTCTTCCCTCACCTGGAGATGGAGAAGGCCGCGCCGCG---ACGCGT 116
                      ***************************************************   ***** 

consensus_3031#0      TAG-ACGGACGCGCAGTGTGCGGCGCAG-ACGTGTGTTGCAGGGGAAGCACATGCGCGCA 178
consensus_3031#1      ANGTACGGACNCGNT-TGTGCNGCATGACGTGNTNGTTGCAGGGGAAGCACATGCGCGCA 175
                        * ****** **   ***** **       *   *************************

consensus_3031#0      GTAGTAATGGTAGCGGTAGCCGGCAGTAGTGGGATTGATATTTCGTGATTGATTTCTTGA 238
consensus_3031#1      GTAGTAATGGTAGCGGT--NCGGCAGTAGTGGGATTGATATTTCGTGATTGATTTCTTGA 233
                      *****************   ****************************************

consensus_3031#0      GTAGTAGCAGTAGTAGCGGTTGTGGGATTGTTGCAAGGGAAGCACATGCGCGCAGTAGTA 298
consensus_3031#1      GTAGTAGCAGTAGTAGCGGTTGTGGGATTGTTGCAAGGGAAGCACATGCGCGCAGTAGTA 293
                      ************************************************************

consensus_3031#0      ACGGTAGCAGCAGCCAGCAGTAGT-GGGATTGATATTTTGTGATTGATTTCTTGAGAAGT 357
consensus_3031#1      ACGGTAGCAGCAGCCAGCAGTAGTTGGGATTGATATTTTGTGATTGATTTCTTGAGAAGT 353
                      ************************ ***********************************

consensus_3031#0      AGCAGTAGTAGCGGTTGTGGGATTGATTTCTT-GAGTAGTAGGATTGATTTCTTGAGTGG 416
consensus_3031#1      AGCAGTAGTAGCGGTTGTNGGATTGATTTCTTTAAGTAGTAGGATTGATTTCTTNAGTGG 413
                      ****************** *************  ******************** *****

consensus_3031#0      TTGTGGGATTGATTTCTTGAGTAGTAGCACTAGTAGCGGCATCCGGCAGCTTGTTTTCTC 476
consensus_3031#1      TTTTGGGATTTATTCTTAG----------------------------------------- 432
                      ** ******* ***  * *                                         

consensus_3031#0      TCTCTTTATATTTTTTTGATATTTTGTGATTCACTAAGATGTATAATTTTGTGAATCACA 536
consensus_3031#1      ------------------------------------------------------------
                                                                                  

consensus_3031#0      AAATATCAAAA 547
consensus_3031#1      -----------