These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3052#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAATAATTTCCCATCACCTGTGCGTTTGACCCCACCCCCACTGGGTTCCTATTTTGGAAAACCATACAAGTTTGGGTTTGAAAACAAGTTTTTGAAGGGTTTGTTTTGAAAACAAAACTTTTCATGCCGCAACTGACAAATTTTTGTTTTAAAGCATTTTGCAGCGTTAAAAATCCACAAAATTCGGGTACATTAAATATACAGCAGCATTGTTTTCAACCTTTGAGCATTTTTTTTTTCAACGATCACAACCCATTAGCTAACAACATTTAAGCTTTACTCCTTTAATCCAT] [+] EMBL CF316126 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAATAATTTCCCATCACCTGTGCGTTTGACCCCACCCCCACTGGGTTCCTATTTTGGAAAACCATACAAGTTTGGGTTTGAAAACAAGTTTTTGAAGGGTTTGTTTTGAAAACAAAACTTTTCATGCCGCAACTGACAAATTTTTGTTTTAAAGCATTTTGCAGCGTTAAAAATCCACAAAATTCGGGTACATTAAATATACAGCAGCATTGTTTTCAACCTTTGAGCATTTTTTTTTTCAACGATCACAACCCATTAGCTAACAACATTTAAGCTTTACTCCTTTAATCCAT] consensusID : consensus_3052#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTGGAAAACCATACAAGTTTGGTTTTGAAAACAAGTTTTTGAAGGGTTTGTTTTGAAAACAAAACTTTTCTTGCCGCAACTGACAAATTTTTGTTTCAAAACATTTTCCCGCGTTAAAAGTTTACAAAATTCGGGTCCCTTAAATTTACCGCACCATTGTTTTCACCCTTTGAGCATTTTTTTTTACAACGATCCCAACCCCTCAGTTAACAACATTTAAG] [+] EMBL CF320254 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTGGAAAACCATACAAGTTTGGTTTTGAAAACAAGTTTTTGAAGGGTTTGTTTTGAAAACAAAACTTTTCTTGCCGCAACTGACAAATTTTTGTTTCAAAACATTTTCCCGCGTTAAAAGTTTACAAAATTCGGGTCCCTTAAATTTACCGCACCATTGTTTTCACCCTTTGAGCATTTTTTTTTACAACGATCCCAACCCCTCAGTTAACAACATTTAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3052#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAATAATTTCCCATCACCTG 60 consensus_3052#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-------TTTTTTTTT----- 48 *************************************** *** * consensus_3052#0 TGCGTTTGACCCCACCCCCACTGGGTTCCTATTTTGGAAAACCATACAAGTTTGGGTTTG 120 consensus_3052#1 -------------------------TTTTTATTTTGGAAAACCATACAAGTTTGGTTTTG 83 ** ************************** **** consensus_3052#0 AAAACAAGTTTTTGAAGGGTTTGTTTTGAAAACAAAACTTTTCATGCCGCAACTGACAAA 180 consensus_3052#1 AAAACAAGTTTTTGAAGGGTTTGTTTTGAAAACAAAACTTTTCTTGCCGCAACTGACAAA 143 ******************************************* **************** consensus_3052#0 TTTTTGTTTTAAAGCATTTTGCAGCGTTAAAAATCCACAAAATTCGGGTACATTAAATAT 240 consensus_3052#1 TTTTTGTTTCAAAACATTTTCCCGCGTTAAAAGTTTACAAAATTCGGGTCCCTTAAATTT 203 ********* *** ****** * ********* * ************* * ****** * consensus_3052#0 ACAGCAGCATTGTTTTCAACCTTTGAGCATTTTTTTTTTCAACGATCACAACCCATTAGC 300 consensus_3052#1 ACCGCACCATTGTTTTCACCCTTTGAGCATTTTTTTTTACAACGATCCCAACCCCTCAGT 263 ** *** *********** ******************* ******** ****** * ** consensus_3052#0 TAACAACATTTAAGCTTTACTCCTTTAATCCAT 333 consensus_3052#1 TAACAACATTTAAG------------------- 277 ************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||