|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3068#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1405 fasta sequence
[CCAAGCTCAACCTCAAGCTCAAGCTCGCATTCTACGCCAGCAAATTCGTCCATTTCTCTCAACTTCTTCACCCAAAAACACATCTAATCCATAACCATGGCTGAGATCCGCCGAAAGCTCGTCATTGTCGGCGATGGTGCTTGTGGTAAAACCTGTTTGTTGATTGTTTTCTCCAAGGGCACTTTCCCCGAGGTCTACGTCCCCACCGTTTTCGAGAACTACGTCGCCGATGTCGAGGTTGACGGCAAGCACGTCGAGCTCGCCCTATGGGATACTGCCGGCCAGGAGGATTATGACCGTCTTCGACCTCTTTCTTACCCCGACTCCCACGTTATCCTGATCTGCTTCGCTGTTGACTCTCCCGACTCCCCCGACAACGTCCAGGAGAATTGGATCTCTGAGGTTCTGCACTTCTGCCAAGGTCTCCCTATCATCCTTGTTGGCTGCAAGAAGGATTTGCGATACGACCAGAAGATCATCGAGGAGCTCCGAAAGACCAGCCAGAAGCCCGTTTCCCCTGAGGAGGGTGAGGAGATCCGCAAGAAGATCGCCGCCTACAAGTACCTTGAGTGCTCAGCCAAGACCAACGAGGGCGTCCGTGAAGTATTCGAGCACGCTACTCGCGCTGCTCTGCTCTCACGAAGCACCCGTGGCAAGTCCCACAAGAAGTGTCTTGTTCTGTAAAGGGCCCATCGAAGCCCTCTGAACGCAGCCCACGCACACGTATCGTGGACCCTGCGTTATAATCCTTGTCGTCACAGTTCAACCTCAACTTGGTCCTCGGTAGCTCGGATAAAACGGGCTCGTGGCAGCCAAGAAGGCCAAATTTGTCGACATGCATCGGTTTTCTCGGAATCTGGAGTTTGATATCGTCTCGCTCATGTCTGGTCCATCGGCCTACGCGCCGGCCCTTCTCGCTGGATTGATGGTTTTCTGGTCGGCGGAGCCCATGGTTTCTTGGACCTTCTGAATCTCGCAGGGGGGTTTGCTATTACCGACAGATACCTCATCTATTTTATTATCACCACTGGCAGGCGAGCGGGACCTCTGTTTTATGTATGTGCTTGTCACGCGCGGGGAGGTGGGCCAGGTGTCTTTTTTTGTTGGGGCCATTGAGGAGGAGGAGTGACTCTCGTTCCTTGCTCTCCTGCCCAGTCTGTCAGTTGCAGGCTGATGGACGAGGAATCACTTGGGAGATGTTACAGGAGGCCAGGAGAGGCTTCGTGGACTGGTTACGGCGAGAGCGTTTGCGTCTGCTTGTGTGTGGATATGGGGTCCGGCTGGGGAAACCAAGTCGGATCGGGCCATAAATCTTTTCGTTTTTTCTCTTGGAGCCTCGAGACCGTTACTTAGACCATGGAGATGGGACATCTATTGCGTAGGGCCTGCCTGTTTAATCTCTTGA]
[+] EMBL AK107382 [CCAAGCTCAACCTCAAGCTCAAGCTCGCATTCTACGCCAGCAAATTCGTCCATTTCTCTCAACTTCTTCACCCAAAAACACATCTAATCCATAACCATGGCTGAGATCCGCCGAAAGCTCGTCATTGTCGGCGATGGTGCTTGTGGTAAAACCTGTTTGTTGATTGTTTTCTCCAAGGGCACTTTCCCCGAGGTCTACGTCCCCACCGTTTTCGAGAACTACGTCGCCGATGTCGAGGTTGACGGCAAGCACGTCGAGCTCGCCCTATGGGATACTGCCGGCCAGGAGGATTATGACCGTCTTCGACCTCTTTCTTACCCCGACTCCCACGTTATCCTGATCTGCTTCGCTGTTGACTCTCCCGACTCCCCCGACAACGTCCAGGAGAATTGGATCTCTGAGGTTCTGCACTTCTGCCAAGGTCTCCCTATCATCCTTGTTGGCTGCAAGAAGGATTTGCGATACGACCAGAAGATCATCGAGGAGCTCCGAAAGACCAGCCAGAAGCCCGTTTCCCCTGAGGAGGGTGAGGAGATCCGCAAGAAGATCGCCGCCTACAAGTACCTTGAGTGCTCAGCCAAGACCAACGAGGGCGTCCGTGAAGTATTCGAGCACGCTACTCGCGCTGCTCTGCTCTCACGAAGCACCCGTGGCAAGTCCCACAAGAAGTGTCTTGTTCTGTAAAGGGCCCATCGAAGCCCTCTGAACGCAGCCCACGCACACGTATCGTGGACCCTGCGTTATAATCCTTGTCGTCACAGTTCAACCTCAACTTGGTCCTCGGTAGCTCGGATAAAACGGGCTCGTGGCAGCCAAGAAGGCCAAATTTGTCGACATGCATCGGTTTTCTCGGAATCTGGAGTTTGATATCGTCTCGCTCATGTCTGGTCCATCGGCCTACGCGCCGGCCCTTCTCGCTGGATTGATGGTTTTCTGGTCGGCGGAGCCCATGGTTTCTTGGACCTTCTGAATCTCGCAGGGGGGTTTGCTATTACCGACAGATACCTCATCTATTTTATTATCACCACTGGCAGGCGAGCGGGACCTCTGTTTTATGTATGTGCTTGTCACGCGCGGGGAGGTGGGCCAGGTGTCTTTTTTTGTTGGGGCCATTGAGGAGGAGGAGTGACTCTCGTTCCTTGCTCTCCTGCCCAGTCTGTCAGTTGCAGGCTGATGGACGAGGAATCACTTGGGAGATGTTACAGGAGGCCAGGAGAGGCTTCGTGGACTGGTTACGGCGAGAGCGTTTGCGTCTGCTTGTGTGTGGATATGGGGTCCGGCTGGGGAAACCAAGTCGGATCGGGCCATAAATCTTTTCGTTTTTTCTCTTGGAGCCTCGAGACCGTTACTTAGACCATGGAGATGGGACATCTATTGCGTAGGGCCTGCCTGTTTAATCTCTTGA]
consensusID : consensus_3068#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1099 fasta sequence
[CTGCTGTTTGCTTCCCCAACCAGCTCCACCTCTGCACCACCACATCCACCACCACCACACCCACCGCCGCCTCCGCTCGTGCTTCTCGCAGCCCCAGCTTGCCGCCCGGCTGCCACGCTCAGCCCACAGAAGCCCTCCCCCGTCCCCGACCCCATCCCACGCGACACCATGGCCGAGATTCGACGAAAGCTTGTTATTGTCGGCGATGGCGCCTGTGGAAAGACGTGTCTGCTCATCGTCTTTTCCAAGGGCACTTTCCCCGAGGTCTACGTCCCCACCGTCTTCGAGAACTATGTCGCCGACGTTGAGGTGGACGGCAAGCACGTAGAGCTTGCCCTCTGGGATACCGCTGGCCAGGAAGATTACGACCGTCTCCGCCCTCTCTCCTACCCCGACTCGCACGTTATCCTCATCTGCTTCGCCGTCGACTCGCCCGACTCGCTTGACAATGTCCAGGAAAAGTGGATCTCCGAGGTTCTCCACTTCTGCCAGGGCCTTCCCATCATCCTCGTTGGATGCAAGAAGGACTTGCGCTTTGACCAGAAGACGATTGAGGAGCTGCACAAGACGTCGCAGAAGCCCGTCACACCCGAGCAGGCCGAGGATGTCCGCAAGAAGATCGGTGCCCAGAAGTACCTTGAGTGCTCAGCCAAGACAAACGAGGGTGTCCGAGAAGTGTTCGAGCACGCCACCCGCGCTGCTCTGCTGACCAGGAAAGAGAAGAAGACCAAGAAGTGCTTGATCTTGTAAGCACCCAATAGCTCAAATAAGGTGATTCTCCGCCCAGCCCGCGCCTTGTTGAGCTCCGACAAGAAACAAGACAAGCGGCTATTGGGTGTGTAATAGTCGTTTATTCGAGAAAGAGGGCAAGACGTGCAAATGGCCACTGCGTGAGCAGACGACTCGGAGACTTCTCCGGGCTGCTTCCGGCCCATCTCTCTCTTTCTCTCAATCTCTCTCTCTCTCTCTCATGGCACCTACACGAGGCGTTTACTGTGCTGGATCTTTTGTGTGTTTGGACCGTACATCATCTTGGGGTAGTTCATGATGAGGGTTATCTTCTCAGAGCGTGTGGAATCGAGATTGAGCAAATGGTAGG]
[+] EMBL AK110781 [CTGCTGTTTGCTTCCCCAACCAGCTCCACCTCTGCACCACCACATCCACCACCACCACACCCACCGCCGCCTCCGCTCGTGCTTCTCGCAGCCCCAGCTTGCCGCCCGGCTGCCACGCTCAGCCCACAGAAGCCCTCCCCCGTCCCCGACCCCATCCCACGCGACACCATGGCCGAGATTCGACGAAAGCTTGTTATTGTCGGCGATGGCGCCTGTGGAAAGACGTGTCTGCTCATCGTCTTTTCCAAGGGCACTTTCCCCGAGGTCTACGTCCCCACCGTCTTCGAGAACTATGTCGCCGACGTTGAGGTGGACGGCAAGCACGTAGAGCTTGCCCTCTGGGATACCGCTGGCCAGGAAGATTACGACCGTCTCCGCCCTCTCTCCTACCCCGACTCGCACGTTATCCTCATCTGCTTCGCCGTCGACTCGCCCGACTCGCTTGACAATGTCCAGGAAAAGTGGATCTCCGAGGTTCTCCACTTCTGCCAGGGCCTTCCCATCATCCTCGTTGGATGCAAGAAGGACTTGCGCTTTGACCAGAAGACGATTGAGGAGCTGCACAAGACGTCGCAGAAGCCCGTCACACCCGAGCAGGCCGAGGATGTCCGCAAGAAGATCGGTGCCCAGAAGTACCTTGAGTGCTCAGCCAAGACAAACGAGGGTGTCCGAGAAGTGTTCGAGCACGCCACCCGCGCTGCTCTGCTGACCAGGAAAGAGAAGAAGACCAAGAAGTGCTTGATCTTGTAAGCACCCAATAGCTCAAATAAGGTGATTCTCCGCCCAGCCCGCGCCTTGTTGAGCTCCGACAAGAAACAAGACAAGCGGCTATTGGGTGTGTAATAGTCGTTTATTCGAGAAAGAGGGCAAGACGTGCAAATGGCCACTGCGTGAGCAGACGACTCGGAGACTTCTCCGGGCTGCTTCCGGCCCATCTCTCTCTTTCTCTCAATCTCTCTCTCTCTCTCTCATGGCACCTACACGAGGCGTTTACTGTGCTGGATCTTTTGTGTGTTTGGACCGTACATCATCTTGGGGTAGTTCATGATGAGGGTTATCTTCTCAGAGCGTGTGGAATCGAGATTGAGCAAATGGTAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3068#0 ------------------------------------------------------------
consensus_3068#1 CTGCTGTTTGCTTCCCCAACCAGCTCCACCTCTGCACCACCACATCCACCACCACCACAC 60
consensus_3068#0 ----------CCAAGCTCAACCTCAAGCTCAAGCTCGCATTCTACGCCAGCAAATTCGTC 50
consensus_3068#1 CCACCGCCGCCTCCGCTCGTGCTTCT-CGCAGCCCCAGCTTGCCGCCCGGCTGCCACGCT 119
* **** ** * ** * * ** ** ** **
consensus_3068#0 CATTTCTCTCAA---CTTCTTCACCCAAAAACACATCTAATCCATAACCATGGCTGAGAT 107
consensus_3068#1 CAGCCCACAGAAGCCCTCCCCCGTCCCCGACCCCATCCCACGCGACACCATGGCCGAGAT 179
** * * ** ** * * ** * * **** * * ******** *****
consensus_3068#0 CCGCCGAAAGCTCGTCATTGTCGGCGATGGTGCTTGTGGTAAAACCTGTTTGTTGATTGT 167
consensus_3068#1 TCGACGAAAGCTTGTTATTGTCGGCGATGGCGCCTGTGGAAAGACGTGTCTGCTCATCGT 239
** ******** ** ************** ** ***** ** ** *** ** * ** **
consensus_3068#0 TTTCTCCAAGGGCACTTTCCCCGAGGTCTACGTCCCCACCGTTTTCGAGAACTACGTCGC 227
consensus_3068#1 CTTTTCCAAGGGCACTTTCCCCGAGGTCTACGTCCCCACCGTCTTCGAGAACTATGTCGC 299
** ************************************** *********** *****
consensus_3068#0 CGATGTCGAGGTTGACGGCAAGCACGTCGAGCTCGCCCTATGGGATACTGCCGGCCAGGA 287
consensus_3068#1 CGACGTTGAGGTGGACGGCAAGCACGTAGAGCTTGCCCTCTGGGATACCGCTGGCCAGGA 359
*** ** ***** ************** ***** ***** ******** ** ********
consensus_3068#0 GGATTATGACCGTCTTCGACCTCTTTCTTACCCCGACTCCCACGTTATCCTGATCTGCTT 347
consensus_3068#1 AGATTACGACCGTCTCCGCCCTCTCTCCTACCCCGACTCGCACGTTATCCTCATCTGCTT 419
***** ******** ** ***** ** *********** *********** ********
consensus_3068#0 CGCTGTTGACTCTCCCGACTCCCCCGACAACGTCCAGGAGAATTGGATCTCTGAGGTTCT 407
consensus_3068#1 CGCCGTCGACTCGCCCGACTCGCTTGACAATGTCCAGGAAAAGTGGATCTCCGAGGTTCT 479
*** ** ***** ******** * ***** ******** ** ******** ********
consensus_3068#0 GCACTTCTGCCAAGGTCTCCCTATCATCCTTGTTGGCTGCAAGAAGGATTTGCGATACGA 467
consensus_3068#1 CCACTTCTGCCAGGGCCTTCCCATCATCCTCGTTGGATGCAAGAAGGACTTGCGCTTTGA 539
*********** ** ** ** ******** ***** *********** ***** * **
consensus_3068#0 CCAGAAGATCATCGAGGAGCTCCGAAAGACCAGCCAGAAGCCCGTTTCCCCTGAGGAGGG 527
consensus_3068#1 CCAGAAGACGATTGAGGAGCTGCACAAGACGTCGCAGAAGCCCGTCACACCCGAGCAGGC 599
******** ** ******** * ***** *********** * ** *** ***
consensus_3068#0 TGAGGAGATCCGCAAGAAGATCGCCGCCTACAAGTACCTTGAGTGCTCAGCCAAGACCAA 587
consensus_3068#1 CGAGGATGTCCGCAAGAAGATCGGTGCCCAGAAGTACCTTGAGTGCTCAGCCAAGACAAA 659
***** *************** *** * ************************** **
consensus_3068#0 CGAGGGCGTCCGTGAAGTATTCGAGCACGCTACTCGCGCTGCTCTGCTCTCACGAAGCAC 647
consensus_3068#1 CGAGGGTGTCCGAGAAGTGTTCGAGCACGCCACCCGCGCTGCTCTGCTG--ACCAGGAAA 717
****** ***** ***** *********** ** ************** ** * * *
consensus_3068#0 CCGTGGCAAGTCCCACAAGAAGTGTCTTGTTCTGTAAAGGGCCCATCGAAGCCCTCTGAA 707
consensus_3068#1 GAGAAGAAGACC----AAGAAGTGCTTGATCTTGTAAGCACCCAAT---AGCTCAAATAA 770
* * * * ******** * * ***** ** ** *** * **
consensus_3068#0 CGCAGCCCACGCACACGTATCGTGGACCCTGCGTTATAATCCTTGTCGTCACAGTTCAAC 767
consensus_3068#1 GGTGATTCTC---CGCCCAGCCCGCGCCTT--GTTGAGCTCCGACAAGAAACAAGACAAG 825
* * * * * * * * ** * *** *** * *** ***
consensus_3068#0 CT-CAACTTGGTCCTCGGTAGCTCGGATAAAACGGGCTCGTGGCAGCCAAGAAGGCCAAA 826
consensus_3068#1 CGGCTATTGGGTGTGTAATAG-TCGTTTA-------TTCGAGA-----AAGAGGGCAAGA 872
* * * * *** *** *** ** *** * **** *** * *
consensus_3068#0 TTTGTCGACATGCATCG-GTTTTCTCGGAATCTGGAGTTTGATATCGTCTCGCTCATGTC 885
consensus_3068#1 CGTGCAAATGGCCACTGCGTGAGCAGACGACTCGGAGACTTCT-CCGGGCTGCTTCCGGC 931
** * ** * ** * * **** * * ** *** * *
consensus_3068#0 TGGTCCATCGGCCTACGCGCCGGCCCTTCTCGCTGGAT-TGATGGTTTTCTGGTCGGCGG 944
consensus_3068#1 CCATCTCTC--TCTTTCTCTCAATCTCTCTCTCTCTCTCTCATGGCACC----TACACGA 985
** ** ** * * **** ** * * **** * **
consensus_3068#0 AGCCCATGGTTTCTTGGACCTTCTGAATCTCGCAGGGGGGTTTGCTATTACCGACAGATA 1004
consensus_3068#1 GGCGTTTACTGTGCTGGATCTTTTGTGTGTTT-----GGACCGTACATCATCTTGGGGTA 1040
** * * * **** *** ** * * ** ** * * * **
consensus_3068#0 CCTCATCTATTTTATTATCACCACTGGCAGGCGAGCGGGACCTCTGTTTTATGTATGTGC 1064
consensus_3068#1 GTTCATGATGAGGGTTATCTTCTCAGA---GCGTGTGGAA--TCGAGATTGAGCAAATGG 1095
**** ***** * * * *** * ** * ** ** * * **
consensus_3068#0 TTGTCACGCGCGGGGAGGTGGGCCAGGTGTCTTTTTTTGTTGGGGCCATTGAGGAGGAGG 1124
consensus_3068#1 TAGG-------------------------------------------------------- 1099
* *
consensus_3068#0 AGTGACTCTCGTTCCTTGCTCTCCTGCCCAGTCTGTCAGTTGCAGGCTGATGGACGAGGA 1184
consensus_3068#1 ------------------------------------------------------------
consensus_3068#0 ATCACTTGGGAGATGTTACAGGAGGCCAGGAGAGGCTTCGTGGACTGGTTACGGCGAGAG 1244
consensus_3068#1 ------------------------------------------------------------
consensus_3068#0 CGTTTGCGTCTGCTTGTGTGTGGATATGGGGTCCGGCTGGGGAAACCAAGTCGGATCGGG 1304
consensus_3068#1 ------------------------------------------------------------
consensus_3068#0 CCATAAATCTTTTCGTTTTTTCTCTTGGAGCCTCGAGACCGTTACTTAGACCATGGAGAT 1364
consensus_3068#1 ------------------------------------------------------------
consensus_3068#0 GGGACATCTATTGCGTAGGGCCTGCCTGTTTAATCTCTTGA 1405
consensus_3068#1 -----------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||