cluster # 307

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Oryza sativa
cluster # 307 cluster # 307 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_307#0 length = 732 sequences # 1

consensus_307#1 length = 404 sequences # 1

consensusID : consensus_307#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 732
fasta sequence

                              [ACATCTCAGGGACAGCAGGTAGCCATCCATTAGCTAGCTAGTCAAATTAACTTCTACACGGCCATGTATCCCCCTGATCCGTCCAAGTCCGGCGAGTCGTCGGCGGCGGCGCCGGAGCCGGTGACCGGGATCCCCGTCGGCATGTTCTACCCTGCTCCGCCGATGGAGCGTGTGGTGTCGTGCCGCATGGCGCCGGCGGCTGGAGGGGCGTGGACCACCGCCCTCTGCGACTGCGCCGACGACTGCAACACCTGTTGTATGGCGTGCTGGTGCCCGTGCATCCCTGTCGGCCAGATCGCAGAAATCGTCGACAGGGGCTCATCATCGTGCGCGTTGAACGCGGTGCTGTACTGCCTGGTGTTCCACGTGTCGGCGGGGATGTGCCAGTGGGTGTACTCGTGCGCCTACCGCGCTCGCCTCCGGGCGGCGTACGACCTGCCGGAGACGCCCTGCTCCGACTGCCTCGTCACCTTCTGCTGCCAGACCTGCTCCATCGCACAGATGCACCGTGAGCTCAAGAACCGCGGCCACGACCCTAACCTTGGATGGGAGGTGAACTCGCGGAGGACGATGATGACTCCTCCCCAACACCAAGCGATGGAAGGAATGACAACTCCCTCATAACAACTACTCATCATCACCTCTCGATCGACCAAACAATACATACACACGATATATAGCTATTACAAGCATGTACACCCTTTGATTTATAAAGTGGCAATACATATATAG]

[+] EMBL AK108480             [ACATCTCAGGGACAGCAGGTAGCCATCCATTAGCTAGCTAGTCAAATTAACTTCTACACGGCCATGTATCCCCCTGATCCGTCCAAGTCCGGCGAGTCGTCGGCGGCGGCGCCGGAGCCGGTGACCGGGATCCCCGTCGGCATGTTCTACCCTGCTCCGCCGATGGAGCGTGTGGTGTCGTGCCGCATGGCGCCGGCGGCTGGAGGGGCGTGGACCACCGCCCTCTGCGACTGCGCCGACGACTGCAACACCTGTTGTATGGCGTGCTGGTGCCCGTGCATCCCTGTCGGCCAGATCGCAGAAATCGTCGACAGGGGCTCATCATCGTGCGCGTTGAACGCGGTGCTGTACTGCCTGGTGTTCCACGTGTCGGCGGGGATGTGCCAGTGGGTGTACTCGTGCGCCTACCGCGCTCGCCTCCGGGCGGCGTACGACCTGCCGGAGACGCCCTGCTCCGACTGCCTCGTCACCTTCTGCTGCCAGACCTGCTCCATCGCACAGATGCACCGTGAGCTCAAGAACCGCGGCCACGACCCTAACCTTGGATGGGAGGTGAACTCGCGGAGGACGATGATGACTCCTCCCCAACACCAAGCGATGGAAGGAATGACAACTCCCTCATAACAACTACTCATCATCACCTCTCGATCGACCAAACAATACATACACACGATATATAGCTATTACAAGCATGTACACCCTTTGATTTATAAAGTGGCAATACATATATAG]




>consensus_307#0
ACATCTCAGGGACAGCAGGTAGCCATCCATTAGCTAGCTAGTCAAATTAACTTCTACACG
GCCATGTATCCCCCTGATCCGTCCAAGTCCGGCGAGTCGTCGGCGGCGGCGCCGGAGCCG
GTGACCGGGATCCCCGTCGGCATGTTCTACCCTGCTCCGCCGATGGAGCGTGTGGTGTCG
TGCCGCATGGCGCCGGCGGCTGGAGGGGCGTGGACCACCGCCCTCTGCGACTGCGCCGAC
GACTGCAACACCTGTTGTATGGCGTGCTGGTGCCCGTGCATCCCTGTCGGCCAGATCGCA
GAAATCGTCGACAGGGGCTCATCATCGTGCGCGTTGAACGCGGTGCTGTACTGCCTGGTG
TTCCACGTGTCGGCGGGGATGTGCCAGTGGGTGTACTCGTGCGCCTACCGCGCTCGCCTC
CGGGCGGCGTACGACCTGCCGGAGACGCCCTGCTCCGACTGCCTCGTCACCTTCTGCTGC
CAGACCTGCTCCATCGCACAGATGCACCGTGAGCTCAAGAACCGCGGCCACGACCCTAAC
CTTGGATGGGAGGTGAACTCGCGGAGGACGATGATGACTCCTCCCCAACACCAAGCGATG
GAAGGAATGACAACTCCCTCATAACAACTACTCATCATCACCTCTCGATCGACCAAACAA
TACATACACACGATATATAGCTATTACAAGCATGTACACCCTTTGATTTATAAAGTGGCA
ATACATATATAG

consensusID : consensus_307#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 404
fasta sequence

                              [CGRGSCHCCCMCTSCCTCGTCACCTTCTGCTGCCAGACCTGCTSCATCGCACAGATGCACCGTGAGCTCAAGAACCGCGGCCTCGACCCTAACCTTGGATGGGAGGTGAACTCGCGAAGGACGATGACGATGACTCCTCCCCAACACCAAGCGATGGAAGGAATGACGACTCGCTCATAACCACTCATCATCACCTCTCGGTCGAGCAAGCAATACGTACACAAGCTAGCTATCACACGCGTGTACCCTTTAATTTACTGAAATTTCCACGTACAAATATAAAGTGCCAATACATACATATATAGGTGTGTGACGTTTAATTTAATTTGTACGAATATTTTATTGTCTCTACTACTTTAAAGACGCAGTCRATTCTCCTCCAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AA754432             [CGRGSCHCCCMCTSCCTCGTCACCTTCTGCTGCCAGACCTGCTSCATCGCACAGATGCACCGTGAGCTCAAGAACCGCGGCCTCGACCCTAACCTTGGATGGGAGGTGAACTCGCGAAGGACGATGACGATGACTCCTCCCCAACACCAAGCGATGGAAGGAATGACGACTCGCTCATAACCACTCATCATCACCTCTCGGTCGAGCAAGCAATACGTACACAAGCTAGCTATCACACGCGTGTACCCTTTAATTTACTGAAATTTCCACGTACAAATATAAAGTGCCAATACATACATATATAGGTGTGTGACGTTTAATTTAATTTGTACGAATATTTTATTGTCTCTACTACTTTAAAGACGCAGTCRATTCTCCTCCAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_307#1
CGRGSCHCCCMCTSCCTCGTCACCTTCTGCTGCCAGACCTGCTSCATCGCACAGATGCAC
CGTGAGCTCAAGAACCGCGGCCTCGACCCTAACCTTGGATGGGAGGTGAACTCGCGAAGG
ACGATGACGATGACTCCTCCCCAACACCAAGCGATGGAAGGAATGACGACTCGCTCATAA
CCACTCATCATCACCTCTCGGTCGAGCAAGCAATACGTACACAAGCTAGCTATCACACGC
GTGTACCCTTTAATTTACTGAAATTTCCACGTACAAATATAAAGTGCCAATACATACATA
TATAGGTGTGTGACGTTTAATTTAATTTGTACGAATATTTTATTGTCTCTACTACTTTAA
AGACGCAGTCRATTCTCCTCCAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_307#0      ACATCTCAGGGACAGCAGGTAGCCATCCATTAGCTAGCTAGTCAAATTAACTTCTACACG 60
consensus_307#1      ------------------------------------------------------------
                                                                                 

consensus_307#0      GCCATGTATCCCCCTGATCCGTCCAAGTCCGGCGAGTCGTCGGCGGCGGCGCCGGAGCCG 120
consensus_307#1      ------------------------------------------------------------
                                                                                 

consensus_307#0      GTGACCGGGATCCCCGTCGGCATGTTCTACCCTGCTCCGCCGATGGAGCGTGTGGTGTCG 180
consensus_307#1      ------------------------------------------------------------
                                                                                 

consensus_307#0      TGCCGCATGGCGCCGGCGGCTGGAGGGGCGTGGACCACCGCCCTCTGCGACTGCGCCGAC 240
consensus_307#1      ------------------------------------------------------------
                                                                                 

consensus_307#0      GACTGCAACACCTGTTGTATGGCGTGCTGGTGCCCGTGCATCCCTGTCGGCCAGATCGCA 300
consensus_307#1      ------------------------------------------------------------
                                                                                 

consensus_307#0      GAAATCGTCGACAGGGGCTCATCATCGTGCGCGTTGAACGCGGTGCTGTACTGCCTGGTG 360
consensus_307#1      ------------------------------------------------------------
                                                                                 

consensus_307#0      TTCCACGTGTCGGCGGGGATGTGCCAGTGGGTGTACTCGTGCGCCTACCGCGCTCGCCTC 420
consensus_307#1      ------------------------------------------------------------
                                                                                 

consensus_307#0      CGGGCGGCGTACGACCTGCCGGAGACGCCCTGCTCCGACTGCCTCGTCACCTTCTGCTGC 480
consensus_307#1      ---------------------------CGRGSCHCCCMCTSCCTCGTCACCTTCTGCTGC 33
                                                *    * **  ** *******************

consensus_307#0      CAGACCTGCTCCATCGCACAGATGCACCGTGAGCTCAAGAACCGCGGCCACGACCCTAAC 540
consensus_307#1      CAGACCTGCTSCATCGCACAGATGCACCGTGAGCTCAAGAACCGCGGCCTCGACCCTAAC 93
                     ********** ************************************** **********

consensus_307#0      CTTGGATGGGAGGTGAACTCGCGGAGGACGATGA---TGACTCCTCCCCAACACCAAGCG 597
consensus_307#1      CTTGGATGGGAGGTGAACTCGCGAAGGACGATGACGATGACTCCTCCCCAACACCAAGCG 153
                     *********************** **********   ***********************

consensus_307#0      ATGGAAGGAATGACAACTCCCTCATAACAACTACTCATCATCACCTCTCGATCGACCAAA 657
consensus_307#1      ATGGAAGGAATGACGACTCGCTCATAAC---CACTCATCATCACCTCTCGGTCGAGCAAG 210
                     ************** **** ********    ****************** **** *** 

consensus_307#0      CAATACATACACACGATATATAGCTATTACAAGCATGTACACCCTTTGATTTA-TAAAGT 716
consensus_307#1      CAATACGTACACAAGCTA----GCTATCACACGCGTGTAC--CCTTTAATTTACTGAAAT 264
                     ****** ****** * **    ***** *** ** *****  ***** ***** * ** *

consensus_307#0      GGCAA--TACATATATAG------------------------------------------ 732
consensus_307#1      TTCCACGTACAAATATAAAGTGCCAATACATACATATATAGGTGTGTGACGTTTAATTTA 324
                       * *  **** *****                                           

consensus_307#0      ------------------------------------------------------------
consensus_307#1      ATTTGTACGAATATTTTATTGTCTCTACTACTTTAAAGACGCAGTCRATTCTCCTCCAAA 384
                                                                                 

consensus_307#0      --------------------
consensus_307#1      AAAAAAAAAAAAAAAAAAAA 404