These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3086#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1241 fasta sequence [AAAAAAAAAGCTCGCGCCGCCCCCCCTCGCCACGACTCATCCTCCTCGTCGCGAATCCCCTCCGCCGGTCCGCCTCCTCAATCCACGCGGCACCACACCATCGGCGCCGCCCTGCACCGCCTGCCGTCGTGCCCCACCATCGGCGCCGCCCTGCACCGCCTGCGGCACCTACCTCCGCCTGTCTCCTCGCCTCCCGCCCCCCTCGCTCTCCCCAAAACGCCACCGCCTCCATCCATGGAAACAGAGGATACAGGAGCGGAAACCCTAGCCCCTCGTCGTCGTCGTCGTCCTCCTCCTCCTCGCCGTGCCTCCCTGACCTGCCGCCGCTTCCACCACCCTCAAGCACCACCGCCGTCGAATGAGATCCCCTCCTCCCTCCATCGCGCCGATTCCCGTCCCCACCACGTCGTCATCTCAGGCACCGACCACCGTTGTTCTTCCGCCAGCAGATCGCCGCCTCCCCGCGTCATATCAAGGGCATCGTGTCAAGGGTGACGCCTCTCCGTCATCTCGTCCATTCCCATTCTGCTTCGTCATCGTGAGGTGGTCACACGATGACCCATCAAATCCGTTTCCCGTCCCCACATCGTCGTCTTAAGTGCCGGGCGCCGCCGTTCCTCCATGACCGCTGGCCCGTAGCGACACCAGAAAACCCCACTTGAGTCGTCGATTCGTCGTCGGCATCTTCTGGCAGCGATGGTCGACCTCGTGGTCCGTTCTTGATCCTCAGCTAAATCACAGGGGAGTGATGCCTACTCGTGAAGAACTGATAAGTCTAAGGATATATGAGTTAACATTAGGTACAACATTCTTACAAAATTGGATGTTGATCTTCTTATTATAATTGGAGTGCAACCTTAACTGTGTGCTACTCCAACCCATCCACCGCGCCGGCCGCCTCCTCCCCCCACTGCATCTGCTGTCGCCGCTGCCTTCTCCCGTTGTTCCAAGCCATGGCATCAACGGCCTTCCTCAACGCCACACCGCATCTATGTCAGTGCTCGTTTCTTGTGGTCTCCACCATCACTGCCCACTCCTATGCATCCTATCTGGCTGTTGCTACTGTCTGTCAAGATGAGTTGAATCATTTCGCTGCACTTGGTGGTGATAATGCTATAGTGGAGACAGATTTCCTTAAAAGTGTTTCTGCTATGTGATTTAAAGACATGCACTCAAATACAGATAGAATCAATGCTAACAAAAGACTCTCTGGTCCTCAAAAAGCAGTTAAAGATCCTTTG] [+] EMBL AK107436 [AAAAAAAAAGCTCGCGCCGCCCCCCCTCGCCACGACTCATCCTCCTCGTCGCGAATCCCCTCCGCCGGTCCGCCTCCTCAATCCACGCGGCACCACACCATCGGCGCCGCCCTGCACCGCCTGCCGTCGTGCCCCACCATCGGCGCCGCCCTGCACCGCCTGCGGCACCTACCTCCGCCTGTCTCCTCGCCTCCCGCCCCCCTCGCTCTCCCCAAAACGCCACCGCCTCCATCCATGGAAACAGAGGATACAGGAGCGGAAACCCTAGCCCCTCGTCGTCGTCGTCGTCCTCCTCCTCCTCGCCGTGCCTCCCTGACCTGCCGCCGCTTCCACCACCCTCAAGCACCACCGCCGTCGAATGAGATCCCCTCCTCCCTCCATCGCGCCGATTCCCGTCCCCACCACGTCGTCATCTCAGGCACCGACCACCGTTGTTCTTCCGCCAGCAGATCGCCGCCTCCCCGCGTCATATCAAGGGCATCGTGTCAAGGGTGACGCCTCTCCGTCATCTCGTCCATTCCCATTCTGCTTCGTCATCGTGAGGTGGTCACACGATGACCCATCAAATCCGTTTCCCGTCCCCACATCGTCGTCTTAAGTGCCGGGCGCCGCCGTTCCTCCATGACCGCTGGCCCGTAGCGACACCAGAAAACCCCACTTGAGTCGTCGATTCGTCGTCGGCATCTTCTGGCAGCGATGGTCGACCTCGTGGTCCGTTCTTGATCCTCAGCTAAATCACAGGGGAGTGATGCCTACTCGTGAAGAACTGATAAGTCTAAGGATATATGAGTTAACATTAGGTACAACATTCTTACAAAATTGGATGTTGATCTTCTTATTATAATTGGAGTGCAACCTTAACTGTGTGCTACTCCAACCCATCCACCGCGCCGGCCGCCTCCTCCCCCCACTGCATCTGCTGTCGCCGCTGCCTTCTCCCGTTGTTCCAAGCCATGGCATCAACGGCCTTCCTCAACGCCACACCGCATCTATGTCAGTGCTCGTTTCTTGTGGTCTCCACCATCACTGCCCACTCCTATGCATCCTATCTGGCTGTTGCTACTGTCTGTCAAGATGAGTTGAATCATTTCGCTGCACTTGGTGGTGATAATGCTATAGTGGAGACAGATTTCCTTAAAAGTGTTTCTGCTATGTGATTTAAAGACATGCACTCAAATACAGATAGAATCAATGCTAACAAAAGACTCTCTGGTCCTCAAAAAGCAGTTAAAGATCCTTTG] consensusID : consensus_3086#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 929 fasta sequence [ACCCACGCGCGATTCCTACGGATCGCGATCCACAATCAGCGGGAAAAAAAAAAGCTCGCGCCGCCCCCCCTCGCCACGACTCATCCTCCTCGTCGCGAATCCCCTCCGCCGGTCCGCCTCCTCAATCCACGCGGCACCACACCATCGGCGCCGCCCTGCACCGCCTGCCGTCGTGCCCCACCATCGGCGCCGCCCTGCACCGCCTGCGGCACCTACCTCCGCCAGTCTCCTCGCCTCCCGCCCCCCTCGCTCTCCCCAAAACGCCACCGCCTCCATCCATGGAAACAGAGGATACAGGAGCGGAAACCCTAGCCCCTCGTCGTCGTCGTCGTCCTCCTCCTCCTCGCCGTGCCTCCCTGACCTGCCGCCGCTTCCACCACCCTCAAGCACCACCGCCGTCGAATGAGATCCCCTCCTCCCTCCATCGCGCCGATTCCCGTCCCCACCACGTCGTCATCTCAGGCACCGACCACCGTTGTTCTTCCGCCAGCAGATCGCCGCCTCCCCGCGTCATATCAAGGGCATCGTGTCAAGGGTGACGCCTCTCCGTCATCTCGTCCATTCCCATTCTGCTTCGTCATCGTGAGGTGGTCACACGATGACCCATCAAATCCGTTTCCCGTCCCCACATCGTCGTCTTAAGTGCCGGGCGCCGCCGTTCCTCCATGACCGCTGGCCCGTAGCGACACCAGAAAACCCCACTTGAGTCGTCGATTCGTCGTCGGCATCTTCTGGCAGCGATGGTCGACCTCGTGGTCCGTTCTTGATCCTCAGGTTCGCCTCGCTCCTCACCTATTCCCCATTCCCTGGACCCGCACCACCTGCGGCGATGTGCGAATTTGATTGATGCTGCCTAGAATTGCCCATGTATTTAAAACAGCAGAGCAGAACATTTCCTTTCTTGTATTTACGAGAATAGTGTTAATAGT] [+] EMBL AK110686 [ACCCACGCGCGATTCCTACGGATCGCGATCCACAATCAGCGGGAAAAAAAAAAGCTCGCGCCGCCCCCCCTCGCCACGACTCATCCTCCTCGTCGCGAATCCCCTCCGCCGGTCCGCCTCCTCAATCCACGCGGCACCACACCATCGGCGCCGCCCTGCACCGCCTGCCGTCGTGCCCCACCATCGGCGCCGCCCTGCACCGCCTGCGGCACCTACCTCCGCCAGTCTCCTCGCCTCCCGCCCCCCTCGCTCTCCCCAAAACGCCACCGCCTCCATCCATGGAAACAGAGGATACAGGAGCGGAAACCCTAGCCCCTCGTCGTCGTCGTCGTCCTCCTCCTCCTCGCCGTGCCTCCCTGACCTGCCGCCGCTTCCACCACCCTCAAGCACCACCGCCGTCGAATGAGATCCCCTCCTCCCTCCATCGCGCCGATTCCCGTCCCCACCACGTCGTCATCTCAGGCACCGACCACCGTTGTTCTTCCGCCAGCAGATCGCCGCCTCCCCGCGTCATATCAAGGGCATCGTGTCAAGGGTGACGCCTCTCCGTCATCTCGTCCATTCCCATTCTGCTTCGTCATCGTGAGGTGGTCACACGATGACCCATCAAATCCGTTTCCCGTCCCCACATCGTCGTCTTAAGTGCCGGGCGCCGCCGTTCCTCCATGACCGCTGGCCCGTAGCGACACCAGAAAACCCCACTTGAGTCGTCGATTCGTCGTCGGCATCTTCTGGCAGCGATGGTCGACCTCGTGGTCCGTTCTTGATCCTCAGGTTCGCCTCGCTCCTCACCTATTCCCCATTCCCTGGACCCGCACCACCTGCGGCGATGTGCGAATTTGATTGATGCTGCCTAGAATTGCCCATGTATTTAAAACAGCAGAGCAGAACATTTCCTTTCTTGTATTTACGAGAATAGTGTTAATAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3086#0 --------------------------------------------AAAAAAAAAGCTCGCG 16 consensus_3086#1 ACCCACGCGCGATTCCTACGGATCGCGATCCACAATCAGCGGGAAAAAAAAAAGCTCGCG 60 **************** consensus_3086#0 CCGCCCCCCCTCGCCACGACTCATCCTCCTCGTCGCGAATCCCCTCCGCCGGTCCGCCTC 76 consensus_3086#1 CCGCCCCCCCTCGCCACGACTCATCCTCCTCGTCGCGAATCCCCTCCGCCGGTCCGCCTC 120 ************************************************************ consensus_3086#0 CTCAATCCACGCGGCACCACACCATCGGCGCCGCCCTGCACCGCCTGCCGTCGTGCCCCA 136 consensus_3086#1 CTCAATCCACGCGGCACCACACCATCGGCGCCGCCCTGCACCGCCTGCCGTCGTGCCCCA 180 ************************************************************ consensus_3086#0 CCATCGGCGCCGCCCTGCACCGCCTGCGGCACCTACCTCCGCCTGTCTCCTCGCCTCCCG 196 consensus_3086#1 CCATCGGCGCCGCCCTGCACCGCCTGCGGCACCTACCTCCGCCAGTCTCCTCGCCTCCCG 240 ******************************************* **************** consensus_3086#0 CCCCCCTCGCTCTCCCCAAAACGCCACCGCCTCCATCCATGGAAACAGAGGATACAGGAG 256 consensus_3086#1 CCCCCCTCGCTCTCCCCAAAACGCCACCGCCTCCATCCATGGAAACAGAGGATACAGGAG 300 ************************************************************ consensus_3086#0 CGGAAACCCTAGCCCCTCGTCGTCGTCGTCGTCCTCCTCCTCCTCGCCGTGCCTCCCTGA 316 consensus_3086#1 CGGAAACCCTAGCCCCTCGTCGTCGTCGTCGTCCTCCTCCTCCTCGCCGTGCCTCCCTGA 360 ************************************************************ consensus_3086#0 CCTGCCGCCGCTTCCACCACCCTCAAGCACCACCGCCGTCGAATGAGATCCCCTCCTCCC 376 consensus_3086#1 CCTGCCGCCGCTTCCACCACCCTCAAGCACCACCGCCGTCGAATGAGATCCCCTCCTCCC 420 ************************************************************ consensus_3086#0 TCCATCGCGCCGATTCCCGTCCCCACCACGTCGTCATCTCAGGCACCGACCACCGTTGTT 436 consensus_3086#1 TCCATCGCGCCGATTCCCGTCCCCACCACGTCGTCATCTCAGGCACCGACCACCGTTGTT 480 ************************************************************ consensus_3086#0 CTTCCGCCAGCAGATCGCCGCCTCCCCGCGTCATATCAAGGGCATCGTGTCAAGGGTGAC 496 consensus_3086#1 CTTCCGCCAGCAGATCGCCGCCTCCCCGCGTCATATCAAGGGCATCGTGTCAAGGGTGAC 540 ************************************************************ consensus_3086#0 GCCTCTCCGTCATCTCGTCCATTCCCATTCTGCTTCGTCATCGTGAGGTGGTCACACGAT 556 consensus_3086#1 GCCTCTCCGTCATCTCGTCCATTCCCATTCTGCTTCGTCATCGTGAGGTGGTCACACGAT 600 ************************************************************ consensus_3086#0 GACCCATCAAATCCGTTTCCCGTCCCCACATCGTCGTCTTAAGTGCCGGGCGCCGCCGTT 616 consensus_3086#1 GACCCATCAAATCCGTTTCCCGTCCCCACATCGTCGTCTTAAGTGCCGGGCGCCGCCGTT 660 ************************************************************ consensus_3086#0 CCTCCATGACCGCTGGCCCGTAGCGACACCAGAAAACCCCACTTGAGTCGTCGATTCGTC 676 consensus_3086#1 CCTCCATGACCGCTGGCCCGTAGCGACACCAGAAAACCCCACTTGAGTCGTCGATTCGTC 720 ************************************************************ consensus_3086#0 GTCGGCATCTTCTGGCAGCGATGGTCGACCTCGTGGTCCGTTCTTGATCCTCAGCTAAA- 735 consensus_3086#1 GTCGGCATCTTCTGGCAGCGATGGTCGACCTCGTGGTCCGTTCTTGATCCTCAGGTTCGC 780 ****************************************************** * consensus_3086#0 -TCACAGGGGAGTGATGCCTACTCGTGAAGAACTGATAAGTCTAAGGATATATGAGTTAA 794 consensus_3086#1 CTCGCTCCTCACCTATTCCCCATTCCCTGGACCCGCACCACCTGCGGCGATGTGCG---- 836 ** * * ** ** * ** * * ** ** ** ** * consensus_3086#0 CATTAGGTACAACATTCTTACAAAATTGGATGTTGATCTTCTTATTATAATTGGAGTGCA 854 consensus_3086#1 AATTTGATTGATGCTGCCTAGAAT------TGCCCATGTATTTAAAACAGC-AGAGCAGA 889 *** * * * * * ** ** ** ** * *** * * *** * consensus_3086#0 ACCTTAACTGTGTGCTACTCCAACCCATCCACCGCGCCGGCCGCCTCCTCCCCCCACTGC 914 consensus_3086#1 ACATTTCCTTTCTTGTATTTA----CGAGAATAGTGTTAATAGT---------------- 929 ** ** ** * * ** * * * * * * consensus_3086#0 ATCTGCTGTCGCCGCTGCCTTCTCCCGTTGTTCCAAGCCATGGCATCAACGGCCTTCCTC 974 consensus_3086#1 ------------------------------------------------------------ consensus_3086#0 AACGCCACACCGCATCTATGTCAGTGCTCGTTTCTTGTGGTCTCCACCATCACTGCCCAC 1034 consensus_3086#1 ------------------------------------------------------------ consensus_3086#0 TCCTATGCATCCTATCTGGCTGTTGCTACTGTCTGTCAAGATGAGTTGAATCATTTCGCT 1094 consensus_3086#1 ------------------------------------------------------------ consensus_3086#0 GCACTTGGTGGTGATAATGCTATAGTGGAGACAGATTTCCTTAAAAGTGTTTCTGCTATG 1154 consensus_3086#1 ------------------------------------------------------------ consensus_3086#0 TGATTTAAAGACATGCACTCAAATACAGATAGAATCAATGCTAACAAAAGACTCTCTGGT 1214 consensus_3086#1 ------------------------------------------------------------ consensus_3086#0 CCTCAAAAAGCAGTTAAAGATCCTTTG 1241 consensus_3086#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||