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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3086#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1241 fasta sequence
[AAAAAAAAAGCTCGCGCCGCCCCCCCTCGCCACGACTCATCCTCCTCGTCGCGAATCCCCTCCGCCGGTCCGCCTCCTCAATCCACGCGGCACCACACCATCGGCGCCGCCCTGCACCGCCTGCCGTCGTGCCCCACCATCGGCGCCGCCCTGCACCGCCTGCGGCACCTACCTCCGCCTGTCTCCTCGCCTCCCGCCCCCCTCGCTCTCCCCAAAACGCCACCGCCTCCATCCATGGAAACAGAGGATACAGGAGCGGAAACCCTAGCCCCTCGTCGTCGTCGTCGTCCTCCTCCTCCTCGCCGTGCCTCCCTGACCTGCCGCCGCTTCCACCACCCTCAAGCACCACCGCCGTCGAATGAGATCCCCTCCTCCCTCCATCGCGCCGATTCCCGTCCCCACCACGTCGTCATCTCAGGCACCGACCACCGTTGTTCTTCCGCCAGCAGATCGCCGCCTCCCCGCGTCATATCAAGGGCATCGTGTCAAGGGTGACGCCTCTCCGTCATCTCGTCCATTCCCATTCTGCTTCGTCATCGTGAGGTGGTCACACGATGACCCATCAAATCCGTTTCCCGTCCCCACATCGTCGTCTTAAGTGCCGGGCGCCGCCGTTCCTCCATGACCGCTGGCCCGTAGCGACACCAGAAAACCCCACTTGAGTCGTCGATTCGTCGTCGGCATCTTCTGGCAGCGATGGTCGACCTCGTGGTCCGTTCTTGATCCTCAGCTAAATCACAGGGGAGTGATGCCTACTCGTGAAGAACTGATAAGTCTAAGGATATATGAGTTAACATTAGGTACAACATTCTTACAAAATTGGATGTTGATCTTCTTATTATAATTGGAGTGCAACCTTAACTGTGTGCTACTCCAACCCATCCACCGCGCCGGCCGCCTCCTCCCCCCACTGCATCTGCTGTCGCCGCTGCCTTCTCCCGTTGTTCCAAGCCATGGCATCAACGGCCTTCCTCAACGCCACACCGCATCTATGTCAGTGCTCGTTTCTTGTGGTCTCCACCATCACTGCCCACTCCTATGCATCCTATCTGGCTGTTGCTACTGTCTGTCAAGATGAGTTGAATCATTTCGCTGCACTTGGTGGTGATAATGCTATAGTGGAGACAGATTTCCTTAAAAGTGTTTCTGCTATGTGATTTAAAGACATGCACTCAAATACAGATAGAATCAATGCTAACAAAAGACTCTCTGGTCCTCAAAAAGCAGTTAAAGATCCTTTG]
[+] EMBL AK107436 [AAAAAAAAAGCTCGCGCCGCCCCCCCTCGCCACGACTCATCCTCCTCGTCGCGAATCCCCTCCGCCGGTCCGCCTCCTCAATCCACGCGGCACCACACCATCGGCGCCGCCCTGCACCGCCTGCCGTCGTGCCCCACCATCGGCGCCGCCCTGCACCGCCTGCGGCACCTACCTCCGCCTGTCTCCTCGCCTCCCGCCCCCCTCGCTCTCCCCAAAACGCCACCGCCTCCATCCATGGAAACAGAGGATACAGGAGCGGAAACCCTAGCCCCTCGTCGTCGTCGTCGTCCTCCTCCTCCTCGCCGTGCCTCCCTGACCTGCCGCCGCTTCCACCACCCTCAAGCACCACCGCCGTCGAATGAGATCCCCTCCTCCCTCCATCGCGCCGATTCCCGTCCCCACCACGTCGTCATCTCAGGCACCGACCACCGTTGTTCTTCCGCCAGCAGATCGCCGCCTCCCCGCGTCATATCAAGGGCATCGTGTCAAGGGTGACGCCTCTCCGTCATCTCGTCCATTCCCATTCTGCTTCGTCATCGTGAGGTGGTCACACGATGACCCATCAAATCCGTTTCCCGTCCCCACATCGTCGTCTTAAGTGCCGGGCGCCGCCGTTCCTCCATGACCGCTGGCCCGTAGCGACACCAGAAAACCCCACTTGAGTCGTCGATTCGTCGTCGGCATCTTCTGGCAGCGATGGTCGACCTCGTGGTCCGTTCTTGATCCTCAGCTAAATCACAGGGGAGTGATGCCTACTCGTGAAGAACTGATAAGTCTAAGGATATATGAGTTAACATTAGGTACAACATTCTTACAAAATTGGATGTTGATCTTCTTATTATAATTGGAGTGCAACCTTAACTGTGTGCTACTCCAACCCATCCACCGCGCCGGCCGCCTCCTCCCCCCACTGCATCTGCTGTCGCCGCTGCCTTCTCCCGTTGTTCCAAGCCATGGCATCAACGGCCTTCCTCAACGCCACACCGCATCTATGTCAGTGCTCGTTTCTTGTGGTCTCCACCATCACTGCCCACTCCTATGCATCCTATCTGGCTGTTGCTACTGTCTGTCAAGATGAGTTGAATCATTTCGCTGCACTTGGTGGTGATAATGCTATAGTGGAGACAGATTTCCTTAAAAGTGTTTCTGCTATGTGATTTAAAGACATGCACTCAAATACAGATAGAATCAATGCTAACAAAAGACTCTCTGGTCCTCAAAAAGCAGTTAAAGATCCTTTG]
consensusID : consensus_3086#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 929 fasta sequence
[ACCCACGCGCGATTCCTACGGATCGCGATCCACAATCAGCGGGAAAAAAAAAAGCTCGCGCCGCCCCCCCTCGCCACGACTCATCCTCCTCGTCGCGAATCCCCTCCGCCGGTCCGCCTCCTCAATCCACGCGGCACCACACCATCGGCGCCGCCCTGCACCGCCTGCCGTCGTGCCCCACCATCGGCGCCGCCCTGCACCGCCTGCGGCACCTACCTCCGCCAGTCTCCTCGCCTCCCGCCCCCCTCGCTCTCCCCAAAACGCCACCGCCTCCATCCATGGAAACAGAGGATACAGGAGCGGAAACCCTAGCCCCTCGTCGTCGTCGTCGTCCTCCTCCTCCTCGCCGTGCCTCCCTGACCTGCCGCCGCTTCCACCACCCTCAAGCACCACCGCCGTCGAATGAGATCCCCTCCTCCCTCCATCGCGCCGATTCCCGTCCCCACCACGTCGTCATCTCAGGCACCGACCACCGTTGTTCTTCCGCCAGCAGATCGCCGCCTCCCCGCGTCATATCAAGGGCATCGTGTCAAGGGTGACGCCTCTCCGTCATCTCGTCCATTCCCATTCTGCTTCGTCATCGTGAGGTGGTCACACGATGACCCATCAAATCCGTTTCCCGTCCCCACATCGTCGTCTTAAGTGCCGGGCGCCGCCGTTCCTCCATGACCGCTGGCCCGTAGCGACACCAGAAAACCCCACTTGAGTCGTCGATTCGTCGTCGGCATCTTCTGGCAGCGATGGTCGACCTCGTGGTCCGTTCTTGATCCTCAGGTTCGCCTCGCTCCTCACCTATTCCCCATTCCCTGGACCCGCACCACCTGCGGCGATGTGCGAATTTGATTGATGCTGCCTAGAATTGCCCATGTATTTAAAACAGCAGAGCAGAACATTTCCTTTCTTGTATTTACGAGAATAGTGTTAATAGT]
[+] EMBL AK110686 [ACCCACGCGCGATTCCTACGGATCGCGATCCACAATCAGCGGGAAAAAAAAAAGCTCGCGCCGCCCCCCCTCGCCACGACTCATCCTCCTCGTCGCGAATCCCCTCCGCCGGTCCGCCTCCTCAATCCACGCGGCACCACACCATCGGCGCCGCCCTGCACCGCCTGCCGTCGTGCCCCACCATCGGCGCCGCCCTGCACCGCCTGCGGCACCTACCTCCGCCAGTCTCCTCGCCTCCCGCCCCCCTCGCTCTCCCCAAAACGCCACCGCCTCCATCCATGGAAACAGAGGATACAGGAGCGGAAACCCTAGCCCCTCGTCGTCGTCGTCGTCCTCCTCCTCCTCGCCGTGCCTCCCTGACCTGCCGCCGCTTCCACCACCCTCAAGCACCACCGCCGTCGAATGAGATCCCCTCCTCCCTCCATCGCGCCGATTCCCGTCCCCACCACGTCGTCATCTCAGGCACCGACCACCGTTGTTCTTCCGCCAGCAGATCGCCGCCTCCCCGCGTCATATCAAGGGCATCGTGTCAAGGGTGACGCCTCTCCGTCATCTCGTCCATTCCCATTCTGCTTCGTCATCGTGAGGTGGTCACACGATGACCCATCAAATCCGTTTCCCGTCCCCACATCGTCGTCTTAAGTGCCGGGCGCCGCCGTTCCTCCATGACCGCTGGCCCGTAGCGACACCAGAAAACCCCACTTGAGTCGTCGATTCGTCGTCGGCATCTTCTGGCAGCGATGGTCGACCTCGTGGTCCGTTCTTGATCCTCAGGTTCGCCTCGCTCCTCACCTATTCCCCATTCCCTGGACCCGCACCACCTGCGGCGATGTGCGAATTTGATTGATGCTGCCTAGAATTGCCCATGTATTTAAAACAGCAGAGCAGAACATTTCCTTTCTTGTATTTACGAGAATAGTGTTAATAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3086#0 --------------------------------------------AAAAAAAAAGCTCGCG 16
consensus_3086#1 ACCCACGCGCGATTCCTACGGATCGCGATCCACAATCAGCGGGAAAAAAAAAAGCTCGCG 60
****************
consensus_3086#0 CCGCCCCCCCTCGCCACGACTCATCCTCCTCGTCGCGAATCCCCTCCGCCGGTCCGCCTC 76
consensus_3086#1 CCGCCCCCCCTCGCCACGACTCATCCTCCTCGTCGCGAATCCCCTCCGCCGGTCCGCCTC 120
************************************************************
consensus_3086#0 CTCAATCCACGCGGCACCACACCATCGGCGCCGCCCTGCACCGCCTGCCGTCGTGCCCCA 136
consensus_3086#1 CTCAATCCACGCGGCACCACACCATCGGCGCCGCCCTGCACCGCCTGCCGTCGTGCCCCA 180
************************************************************
consensus_3086#0 CCATCGGCGCCGCCCTGCACCGCCTGCGGCACCTACCTCCGCCTGTCTCCTCGCCTCCCG 196
consensus_3086#1 CCATCGGCGCCGCCCTGCACCGCCTGCGGCACCTACCTCCGCCAGTCTCCTCGCCTCCCG 240
******************************************* ****************
consensus_3086#0 CCCCCCTCGCTCTCCCCAAAACGCCACCGCCTCCATCCATGGAAACAGAGGATACAGGAG 256
consensus_3086#1 CCCCCCTCGCTCTCCCCAAAACGCCACCGCCTCCATCCATGGAAACAGAGGATACAGGAG 300
************************************************************
consensus_3086#0 CGGAAACCCTAGCCCCTCGTCGTCGTCGTCGTCCTCCTCCTCCTCGCCGTGCCTCCCTGA 316
consensus_3086#1 CGGAAACCCTAGCCCCTCGTCGTCGTCGTCGTCCTCCTCCTCCTCGCCGTGCCTCCCTGA 360
************************************************************
consensus_3086#0 CCTGCCGCCGCTTCCACCACCCTCAAGCACCACCGCCGTCGAATGAGATCCCCTCCTCCC 376
consensus_3086#1 CCTGCCGCCGCTTCCACCACCCTCAAGCACCACCGCCGTCGAATGAGATCCCCTCCTCCC 420
************************************************************
consensus_3086#0 TCCATCGCGCCGATTCCCGTCCCCACCACGTCGTCATCTCAGGCACCGACCACCGTTGTT 436
consensus_3086#1 TCCATCGCGCCGATTCCCGTCCCCACCACGTCGTCATCTCAGGCACCGACCACCGTTGTT 480
************************************************************
consensus_3086#0 CTTCCGCCAGCAGATCGCCGCCTCCCCGCGTCATATCAAGGGCATCGTGTCAAGGGTGAC 496
consensus_3086#1 CTTCCGCCAGCAGATCGCCGCCTCCCCGCGTCATATCAAGGGCATCGTGTCAAGGGTGAC 540
************************************************************
consensus_3086#0 GCCTCTCCGTCATCTCGTCCATTCCCATTCTGCTTCGTCATCGTGAGGTGGTCACACGAT 556
consensus_3086#1 GCCTCTCCGTCATCTCGTCCATTCCCATTCTGCTTCGTCATCGTGAGGTGGTCACACGAT 600
************************************************************
consensus_3086#0 GACCCATCAAATCCGTTTCCCGTCCCCACATCGTCGTCTTAAGTGCCGGGCGCCGCCGTT 616
consensus_3086#1 GACCCATCAAATCCGTTTCCCGTCCCCACATCGTCGTCTTAAGTGCCGGGCGCCGCCGTT 660
************************************************************
consensus_3086#0 CCTCCATGACCGCTGGCCCGTAGCGACACCAGAAAACCCCACTTGAGTCGTCGATTCGTC 676
consensus_3086#1 CCTCCATGACCGCTGGCCCGTAGCGACACCAGAAAACCCCACTTGAGTCGTCGATTCGTC 720
************************************************************
consensus_3086#0 GTCGGCATCTTCTGGCAGCGATGGTCGACCTCGTGGTCCGTTCTTGATCCTCAGCTAAA- 735
consensus_3086#1 GTCGGCATCTTCTGGCAGCGATGGTCGACCTCGTGGTCCGTTCTTGATCCTCAGGTTCGC 780
****************************************************** *
consensus_3086#0 -TCACAGGGGAGTGATGCCTACTCGTGAAGAACTGATAAGTCTAAGGATATATGAGTTAA 794
consensus_3086#1 CTCGCTCCTCACCTATTCCCCATTCCCTGGACCCGCACCACCTGCGGCGATGTGCG---- 836
** * * ** ** * ** * * ** ** ** ** *
consensus_3086#0 CATTAGGTACAACATTCTTACAAAATTGGATGTTGATCTTCTTATTATAATTGGAGTGCA 854
consensus_3086#1 AATTTGATTGATGCTGCCTAGAAT------TGCCCATGTATTTAAAACAGC-AGAGCAGA 889
*** * * * * * ** ** ** ** * *** * * *** *
consensus_3086#0 ACCTTAACTGTGTGCTACTCCAACCCATCCACCGCGCCGGCCGCCTCCTCCCCCCACTGC 914
consensus_3086#1 ACATTTCCTTTCTTGTATTTA----CGAGAATAGTGTTAATAGT---------------- 929
** ** ** * * ** * * * * * *
consensus_3086#0 ATCTGCTGTCGCCGCTGCCTTCTCCCGTTGTTCCAAGCCATGGCATCAACGGCCTTCCTC 974
consensus_3086#1 ------------------------------------------------------------
consensus_3086#0 AACGCCACACCGCATCTATGTCAGTGCTCGTTTCTTGTGGTCTCCACCATCACTGCCCAC 1034
consensus_3086#1 ------------------------------------------------------------
consensus_3086#0 TCCTATGCATCCTATCTGGCTGTTGCTACTGTCTGTCAAGATGAGTTGAATCATTTCGCT 1094
consensus_3086#1 ------------------------------------------------------------
consensus_3086#0 GCACTTGGTGGTGATAATGCTATAGTGGAGACAGATTTCCTTAAAAGTGTTTCTGCTATG 1154
consensus_3086#1 ------------------------------------------------------------
consensus_3086#0 TGATTTAAAGACATGCACTCAAATACAGATAGAATCAATGCTAACAAAAGACTCTCTGGT 1214
consensus_3086#1 ------------------------------------------------------------
consensus_3086#0 CCTCAAAAAGCAGTTAAAGATCCTTTG 1241
consensus_3086#1 ---------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||