These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3091#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence [AATCCGAAGCCAGAAGAATCCAAGCNGACANGCTCGGGCTCCCCACCGTGAAACCTCCCAAGAACTTTGCCTGCCAGCCTGCATAAACAAGCAGAGGGATGGAGACCATCTGCCATCCTTACGTCTTCAAGATACCTGGCCTCCGAGTTGNCGCCCATGGAACAATAAAGTTGGAGCTTCAGGCTGCAACATATGAGGAACAGAGCATGCCTGACTGACTGACCAGCGGAAGGAATGCCTGGATATGGATTTNTGCTTGGGTGAGATGCTGACTGCTGGAAGGATGATTAATGAATGCACTGGGTTGCATGCTGGGACTGGCAGGGCACAAAGTGGTCGCAAGTGCATGCCATCCGCGNCAGTTGTCCTGGGGGGATACTGAGAAGTTTTGCTTAGAGGATGTCTCCACGTTTTGTTGTGTGTGCACGGCTGGTTTGTGTTTCATGAAAAGGCAGAGTGCTGTTGTATCAAAACATGCATGATTGATACCCATTTGTATGAACCTTGAGACGNAACTGGAACTTGGTGTGCATTGGCAATGGACANCCCCTGAAATGAGTGGAAATACGAAGCTTTATTCGAGAGATTTTGC] [+] EMBL BI806257 [AATCCGAAGCCAGAAGAATCCAAGCNGACANGCTCGGGCTCCCCACCGTGAAACCTCCCAAGAACTTTGCCTGCCAGCCTGCATAAACAAGCAGAGGGATGGAGACCATCTGCCATCCTTACGTCTTCAAGATACCTGGCCTCCGAGTTGNCGCCCATGGAACAATAAAGTTGGAGCTTCAGGCTGCAACATATGAGGAACAGAGCATGCCTGACTGACTGACCAGCGGAAGGAATGCCTGGATATGGATTTNTGCTTGGGTGAGATGCTGACTGCTGGAAGGATGATTAATGAATGCACTGGGTTGCATGCTGGGACTGGCAGGGCACAAAGTGGTCGCAAGTGCATGCCATCCGCGNCAGTTGTCCTGGGGGGATACTGAGAAGTTTTGCTTAGAGGATGTCTCCACGTTTTGTTGTGTGTGCACGGCTGGTTTGTGTTTCATGAAAAGGCAGAGTGCTGTTGTATCAAAACATGCATGATTGATACCCATTTGTATGAACCTTGAGACGNAACTGGAACTTGGTGTGCATTGGCAATGGACANCCCCTGAAATGAGTGGAAATACGAAGCTTTATTCGAGAGATTTTGC] consensusID : consensus_3091#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 210 fasta sequence [GAGAAGTTTTGCTTAGAGGATGTCTCCAGTTTTGTTGTGTGTCACTGCTGTTTTGTTTCATGAAAAGGCAGAGTCTGTTGTATCAAAACATCAATGATTATACCAATTTTATAACATTAGACGTAACTGAACTTGTGTGCATTGCAATGACACATCTGAAATAGTGAAATACGAAGCTTTATTCGAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF315008 [GAGAAGTTTTGCTTAGAGGATGTCTCCAGTTTTGTTGTGTGTCACTGCTGTTTTGTTTCATGAAAAGGCAGAGTCTGTTGTATCAAAACATCAATGATTATACCAATTTTATAACATTAGACGTAACTGAACTTGTGTGCATTGCAATGACACATCTGAAATAGTGAAATACGAAGCTTTATTCGAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3091#0 AATCCGAAGCCAGAAGAATCCAAGCNGACANGCTCGGGCTCCCCACCGTGAAACCTCCCA 60 consensus_3091#1 ------------------------------------------------------------ consensus_3091#0 AGAACTTTGCCTGCCAGCCTGCATAAACAAGCAGAGGGATGGAGACCATCTGCCATCCTT 120 consensus_3091#1 ------------------------------------------------------------ consensus_3091#0 ACGTCTTCAAGATACCTGGCCTCCGAGTTGNCGCCCATGGAACAATAAAGTTGGAGCTTC 180 consensus_3091#1 ------------------------------------------------------------ consensus_3091#0 AGGCTGCAACATATGAGGAACAGAGCATGCCTGACTGACTGACCAGCGGAAGGAATGCCT 240 consensus_3091#1 ------------------------------------------------------------ consensus_3091#0 GGATATGGATTTNTGCTTGGGTGAGATGCTGACTGCTGGAAGGATGATTAATGAATGCAC 300 consensus_3091#1 ------------------------------------------------------------ consensus_3091#0 TGGGTTGCATGCTGGGACTGGCAGGGCACAAAGTGGTCGCAAGTGCATGCCATCCGCGNC 360 consensus_3091#1 ------------------------------------------------------------ consensus_3091#0 AGTTGTCCTGGGGGGATACTGAGAAGTTTTGCTTAGAGGATGTCTCCACGTTTTGTTGTG 420 consensus_3091#1 --------------------GAGAAGTTTTGCTTAGAGGATGTCTCCA-GTTTTGTTGTG 39 **************************** *********** consensus_3091#0 TGTGCACGGCTGGTTTGTGTTTCATGAAAAGGCAGAGTGCTGTTGTATCAAAACATGCAT 480 consensus_3091#1 TGT-CACTGCTG--TTTTGTTTCATGAAAAGGCAGAGT-CTGTTGTATCAAAACATCAAT 95 *** *** **** ** ********************* ***************** ** consensus_3091#0 GATTGATACCCATTTGTATGAACCTTGAGACGNAACTGGAACTTGGTGTGCATTGGCAAT 540 consensus_3091#1 GATT-ATACCAATTT-TATAA--CATTAGACGTAACTG-AACTTG-TGTGCATTG-CAAT 148 **** ***** **** *** * * * ***** ***** ****** ********* **** consensus_3091#0 GGACANCCCCTGAAATGAGTGGAAATACGAAGCTTTATTCGAGAGATTTTGC-------- 592 consensus_3091#1 GAC--ACATCTGAAAT-AGTG-AAATACGAAGCTTTATTCGAAAAAAAAAAAAAAAAAAA 204 * * ******* **** ******************** * * consensus_3091#0 ------ consensus_3091#1 AAAAAA 210 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||