cluster # 3102

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Oryza sativa
cluster # 3102 cluster # 3102 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3102#0 length = 633 sequences # 1

consensus_3102#1 length = 256 sequences # 1

consensusID : consensus_3102#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence

                              [CCCCCTGAGAAGCCTCACTGCCCGGCTCACTCTACCATCGTCGTGACCGAGACCGTTGCCGTCTCGACCACCGTCTGCCCCGTCGCCACCGTTGTTCCCCCTCCCCCGGCTGGCAACGGCACCGTCCCTGCCTACCCTGGCAAGCCTTCTCAGCCTGCGCAGCCCGTGGTTCCTTCCATGCCCAGCAAGCCCGTGGTTCCCTCCATGCCTGCTCAGCCTCAGTGCCCCAGCTACACCACCACCCACGTCACCAAGGAGCACGTCACCACCATCACTACTGTTGAGACCAAGACCGTCGAGGTTCCTTGCCCTCCCGTCCAGACTGCTCCCGTCAAGCCCCCCACCGTCACCCCTCCCGCTGGTGGCAACCAGACCATCCCTAAGCCTCCCCCGGCTCAGGCTGGTGCCGCTGGCCTTGCTGGCTCCGCGGCCTTCGCTGCCGTCGCCGGTTTCGCCGCTTTCATCCTTGCTTAAATGAGCAGATGAAGTTCCCGTTCGAAGCTGCTTAGCTGAGCATGGGCATTCTCTGTATCTTGTTTTTGCAAATATAGCGGCGAAGGTCATTTAATTTTCACGACAAGCAAACTACATATTTTGGAGGACTGCTTCCACTCTGGTTGGACGATTGTACAA]

[+] EMBL CA999384             [CCCCCTGAGAAGCCTCACTGCCCGGCTCACTCTACCATCGTCGTGACCGAGACCGTTGCCGTCTCGACCACCGTCTGCCCCGTCGCCACCGTTGTTCCCCCTCCCCCGGCTGGCAACGGCACCGTCCCTGCCTACCCTGGCAAGCCTTCTCAGCCTGCGCAGCCCGTGGTTCCTTCCATGCCCAGCAAGCCCGTGGTTCCCTCCATGCCTGCTCAGCCTCAGTGCCCCAGCTACACCACCACCCACGTCACCAAGGAGCACGTCACCACCATCACTACTGTTGAGACCAAGACCGTCGAGGTTCCTTGCCCTCCCGTCCAGACTGCTCCCGTCAAGCCCCCCACCGTCACCCCTCCCGCTGGTGGCAACCAGACCATCCCTAAGCCTCCCCCGGCTCAGGCTGGTGCCGCTGGCCTTGCTGGCTCCGCGGCCTTCGCTGCCGTCGCCGGTTTCGCCGCTTTCATCCTTGCTTAAATGAGCAGATGAAGTTCCCGTTCGAAGCTGCTTAGCTGAGCATGGGCATTCTCTGTATCTTGTTTTTGCAAATATAGCGGCGAAGGTCATTTAATTTTCACGACAAGCAAACTACATATTTTGGAGGACTGCTTCCACTCTGGTTGGACGATTGTACAA]




>consensus_3102#0
CCCCCTGAGAAGCCTCACTGCCCGGCTCACTCTACCATCGTCGTGACCGAGACCGTTGCC
GTCTCGACCACCGTCTGCCCCGTCGCCACCGTTGTTCCCCCTCCCCCGGCTGGCAACGGC
ACCGTCCCTGCCTACCCTGGCAAGCCTTCTCAGCCTGCGCAGCCCGTGGTTCCTTCCATG
CCCAGCAAGCCCGTGGTTCCCTCCATGCCTGCTCAGCCTCAGTGCCCCAGCTACACCACC
ACCCACGTCACCAAGGAGCACGTCACCACCATCACTACTGTTGAGACCAAGACCGTCGAG
GTTCCTTGCCCTCCCGTCCAGACTGCTCCCGTCAAGCCCCCCACCGTCACCCCTCCCGCT
GGTGGCAACCAGACCATCCCTAAGCCTCCCCCGGCTCAGGCTGGTGCCGCTGGCCTTGCT
GGCTCCGCGGCCTTCGCTGCCGTCGCCGGTTTCGCCGCTTTCATCCTTGCTTAAATGAGC
AGATGAAGTTCCCGTTCGAAGCTGCTTAGCTGAGCATGGGCATTCTCTGTATCTTGTTTT
TGCAAATATAGCGGCGAAGGTCATTTAATTTTCACGACAAGCAAACTACATATTTTGGAG
GACTGCTTCCACTCTGGTTGGACGATTGTACAA

consensusID : consensus_3102#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 256
fasta sequence

                              [AAGGATTCGGAAACGTGCACACCACAGTTTGCCAAACGGGCTTGCTTTGGGCTGGAGGGGATTGGGGCCAATTTGATCTGGTAATGCATTGGTTTGTGTGTCGGCAAAATAAGACGCAGGCAGGAAAGGTCAATTTGAATTGTTCAACAGACAAGCAAACTACATATTTTGGAGGACTGCTTCCACTCTGTTGGACGATTGTACAAGAGTTTAACTTAGGCTTCTTCCTGAATATCATTTTGCCATACCCCCCAAA]

[+] EMBL BI801731             [AAGGATTCGGAAACGTGCACACCACAGTTTGCCAAACGGGCTTGCTTTGGGCTGGAGGGGATTGGGGCCAATTTGATCTGGTAATGCATTGGTTTGTGTGTCGGCAAAATAAGACGCAGGCAGGAAAGGTCAATTTGAATTGTTCAACAGACAAGCAAACTACATATTTTGGAGGACTGCTTCCACTCTGTTGGACGATTGTACAAGAGTTTAACTTAGGCTTCTTCCTGAATATCATTTTGCCATACCCCCCAAA]




>consensus_3102#1
AAGGATTCGGAAACGTGCACACCACAGTTTGCCAAACGGGCTTGCTTTGGGCTGGAGGGG
ATTGGGGCCAATTTGATCTGGTAATGCATTGGTTTGTGTGTCGGCAAAATAAGACGCAGG
CAGGAAAGGTCAATTTGAATTGTTCAACAGACAAGCAAACTACATATTTTGGAGGACTGC
TTCCACTCTGTTGGACGATTGTACAAGAGTTTAACTTAGGCTTCTTCCTGAATATCATTT
TGCCATACCCCCCAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3102#0      CCCCCTGAGAAGCCTCACTGCCCGGCTCACTCTACCATCGTCGTGACCGAGACCGTTGCC 60
consensus_3102#1      ------------------------------------------------------------
                                                                                  

consensus_3102#0      GTCTCGACCACCGTCTGCCCCGTCGCCACCGTTGTTCCCCCTCCCCCGGCTGGCAACGGC 120
consensus_3102#1      ------------------------------------------------------------
                                                                                  

consensus_3102#0      ACCGTCCCTGCCTACCCTGGCAAGCCTTCTCAGCCTGCGCAGCCCGTGGTTCCTTCCATG 180
consensus_3102#1      ------------------------------------------------------------
                                                                                  

consensus_3102#0      CCCAGCAAGCCCGTGGTTCCCTCCATGCCTGCTCAGCCTCAGTGCCCCAGCTACACCACC 240
consensus_3102#1      ------------------------------------------------------------
                                                                                  

consensus_3102#0      ACCCACGTCACCAAGGAGCACGTCACCACCATCACTACTGTTGAGACCAAGACCGTCGAG 300
consensus_3102#1      ------------------------------------------------------------
                                                                                  

consensus_3102#0      GTTCCTTGCCCTCCCGTCCAGACTGCTCCCGTCAAGCCCCCCACCGTCACCCCTCCCGCT 360
consensus_3102#1      ------------------------------------------------------------
                                                                                  

consensus_3102#0      GGTGGCAACCAGACCATCCCTAAGCCTCCCCCGGCTCAGGCTGGTGCCGCTGGCCTTGCT 420
consensus_3102#1      ---------------------------------------------------------AAG 3
                                                                                  

consensus_3102#0      GGCTCCGCGGCCTTCGCTGCCGTCGCCGGTTTCGCCGCTTTCATCCTTGCTTAAATGAGC 480
consensus_3102#1      GATTCGGAAACGTGCAC----ACCACAG--TTTGCCAA--ACGGGCTTGCTT---TGGGC 52
                      *  ** *   * * * *      * * *  ** ***     *   *******   ** **

consensus_3102#0      AGATGAAGTTCCCGTTCGAAGCTGCTTAGCTGAGCATGGGCATTCTCTGTATCTTGTTTT 540
consensus_3102#1      TGGAGGGGATTGGGGCCAATTTGATCTGGTAATGCATTGG---TTTGTGTGTCGGCAAAA 109
                       *  *  * *   *  * *       * *    **** **   * * *** **       

consensus_3102#0      TGCAAATATAGCGGCGAAGGTCATTT--AATT-TTCAC--GACAAGCAAACTACATATTT 595
consensus_3102#1      TAAGACGCAGGCAGGAAAGGTCAATTTGAATTGTTCAACAGACAAGCAAACTACATATTT 169
                      *   *     ** *  ******* **  **** ****   ********************

consensus_3102#0      TGGAGGACTGCTTCCACTCTGGTTGGACGATTGTACAA---------------------- 633
consensus_3102#1      TGGAGGACTGCTTCCACTCTG-TTGGACGATTGTACAAGAGTTTAACTTAGGCTTCTTCC 228
                      ********************* ****************                      

consensus_3102#0      ----------------------------
consensus_3102#1      TGAATATCATTTTGCCATACCCCCCAAA 256