cluster # 3103

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3103 cluster # 3103 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3103#0 length = 439 sequences # 1

consensus_3103#1 length = 258 sequences # 1

consensusID : consensus_3103#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence

                              [NCCTCNGCCGCCCGCCTCCTCCACCGCCCACACGAGGGGCACGCGCCTCGCCGCCGCCTCCCCTCGCCGTCACTACCTTCCATTTCCGCCGCCTCCTCTCCACGCGCCACCTCACCCTCCCCCTCCCCCACGCGGCGGTATAAGTACGCTCCCCTCTCCCTACCCCCAAAAACCACCAAACCCTAGCCCCCCCAACTCCGAGGCGGCGGGCNGGGGCGAGGANGGNGTGGGTGGTTTTAGGGTTTTGATCCGGAAGGAGTTCCGGGGGGCGGCGGCGGGATGAGCAGCCTTGGTGGAGCGGCTGGNGGTGCGGTCGGAGAAGCGGCCGCACCGGTTGGAAGCTTCAGNTTTTGTTCCTTTAGTTAGGGTTAATTNCGCGTTGGTAATCATGGTATAGTNTTTCTGTGTAAATTGTATCCGTTAAATTCAAAAAAACGAN]

[+] EMBL AU069649             [NCCTCNGCCGCCCGCCTCCTCCACCGCCCACACGAGGGGCACGCGCCTCGCCGCCGCCTCCCCTCGCCGTCACTACCTTCCATTTCCGCCGCCTCCTCTCCACGCGCCACCTCACCCTCCCCCTCCCCCACGCGGCGGTATAAGTACGCTCCCCTCTCCCTACCCCCAAAAACCACCAAACCCTAGCCCCCCCAACTCCGAGGCGGCGGGCNGGGGCGAGGANGGNGTGGGTGGTTTTAGGGTTTTGATCCGGAAGGAGTTCCGGGGGGCGGCGGCGGGATGAGCAGCCTTGGTGGAGCGGCTGGNGGTGCGGTCGGAGAAGCGGCCGCACCGGTTGGAAGCTTCAGNTTTTGTTCCTTTAGTTAGGGTTAATTNCGCGTTGGTAATCATGGTATAGTNTTTCTGTGTAAATTGTATCCGTTAAATTCAAAAAAACGAN]




>consensus_3103#0
NCCTCNGCCGCCCGCCTCCTCCACCGCCCACACGAGGGGCACGCGCCTCGCCGCCGCCTC
CCCTCGCCGTCACTACCTTCCATTTCCGCCGCCTCCTCTCCACGCGCCACCTCACCCTCC
CCCTCCCCCACGCGGCGGTATAAGTACGCTCCCCTCTCCCTACCCCCAAAAACCACCAAA
CCCTAGCCCCCCCAACTCCGAGGCGGCGGGCNGGGGCGAGGANGGNGTGGGTGGTTTTAG
GGTTTTGATCCGGAAGGAGTTCCGGGGGGCGGCGGCGGGATGAGCAGCCTTGGTGGAGCG
GCTGGNGGTGCGGTCGGAGAAGCGGCCGCACCGGTTGGAAGCTTCAGNTTTTGTTCCTTT
AGTTAGGGTTAATTNCGCGTTGGTAATCATGGTATAGTNTTTCTGTGTAAATTGTATCCG
TTAAATTCAAAAAAACGAN

consensusID : consensus_3103#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 258
fasta sequence

                              [CAGTGGCCGTTACCACCGCCTCCCTCCTCCCCCTCCTCTCTCCGAGTCCGAGAGCACACGCAGAGAAAGAGAGAGAGAGAGACGCGTCCCCTCGCCGCCCGCCTCCTCCACCGCCCACACGAGGGGCACGCGCCTNGCCGCCGCCTCCCCTCGCCGTCACTACCTTCCATTTCCGCCGCCTCCTNTCCACGNGNCACCTCACCCTCCNGCTNCCCCACGCGGCGGTATAAGTACGNTCCCCTNTTNCCTACCCCCAAA]

[+] EMBL OSC27281             [CAGTGGCCGTTACCACCGCCTCCCTCCTCCCCCTCCTCTCTCCGAGTCCGAGAGCACACGCAGAGAAAGAGAGAGAGAGAGACGCGTCCCCTCGCCGCCCGCCTCCTCCACCGCCCACACGAGGGGCACGCGCCTNGCCGCCGCCTCCCCTCGCCGTCACTACCTTCCATTTCCGCCGCCTCCTNTCCACGNGNCACCTCACCCTCCNGCTNCCCCACGCGGCGGTATAAGTACGNTCCCCTNTTNCCTACCCCCAAA]




>consensus_3103#1
CAGTGGCCGTTACCACCGCCTCCCTCCTCCCCCTCCTCTCTCCGAGTCCGAGAGCACACG
CAGAGAAAGAGAGAGAGAGAGACGCGTCCCCTCGCCGCCCGCCTCCTCCACCGCCCACAC
GAGGGGCACGCGCCTNGCCGCCGCCTCCCCTCGCCGTCACTACCTTCCATTTCCGCCGCC
TCCTNTCCACGNGNCACCTCACCCTCCNGCTNCCCCACGCGGCGGTATAAGTACGNTCCC
CTNTTNCCTACCCCCAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3103#0      ------------------------------------------------------------
consensus_3103#1      CAGTGGCCGTTACCACCGCCTCCCTCCTCCCCCTCCTCTCTCCGAGTCCGAGAGCACACG 60
                                                                                  

consensus_3103#0      ---------------------------NCCTCNGCCGCCCGCCTCCTCCACCGCCCACAC 33
consensus_3103#1      CAGAGAAAGAGAGAGAGAGAGACGCGTCCCCTCGCCGCCCGCCTCCTCCACCGCCCACAC 120
                                                  **   ***************************

consensus_3103#0      GAGGGGCACGCGCCTCGCCGCCGCCTCCCCTCGCCGTCACTACCTTCCATTTCCGCCGCC 93
consensus_3103#1      GAGGGGCACGCGCCTNGCCGCCGCCTCCCCTCGCCGTCACTACCTTCCATTTCCGCCGCC 180
                      *************** ********************************************

consensus_3103#0      TCCTCTCCACGCGCCACCTCACCCTCCCCCTCCCCCACGCGGCGGTATAAGTACGCTCCC 153
consensus_3103#1      TCCTNTCCACGNGNCACCTCACCCTCCNGCTNCCCCACGCGGCGGTATAAGTACGNTCCC 240
                      **** ****** * *************  ** *********************** ****

consensus_3103#0      CTCT-CCCTACCCCCAAAAACCACCAAACCCTAGCCCCCCCAACTCCGAGGCGGCGGGCN 212
consensus_3103#1      CTNTTNCCTACCCCCAAA------------------------------------------ 258
                      ** *  ************                                          

consensus_3103#0      GGGGCGAGGANGGNGTGGGTGGTTTTAGGGTTTTGATCCGGAAGGAGTTCCGGGGGGCGG 272
consensus_3103#1      ------------------------------------------------------------
                                                                                  

consensus_3103#0      CGGCGGGATGAGCAGCCTTGGTGGAGCGGCTGGNGGTGCGGTCGGAGAAGCGGCCGCACC 332
consensus_3103#1      ------------------------------------------------------------
                                                                                  

consensus_3103#0      GGTTGGAAGCTTCAGNTTTTGTTCCTTTAGTTAGGGTTAATTNCGCGTTGGTAATCATGG 392
consensus_3103#1      ------------------------------------------------------------
                                                                                  

consensus_3103#0      TATAGTNTTTCTGTGTAAATTGTATCCGTTAAATTCAAAAAAACGAN 439
consensus_3103#1      -----------------------------------------------