cluster # 3119

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Oryza sativa
cluster # 3119 cluster # 3119 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3119#0 length = 488 sequences # 1

consensus_3119#1 length = 399 sequences # 1

consensusID : consensus_3119#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 488
fasta sequence

                              [TGATGTCGAGGATNCACCCTGGCGAGGANCCGGTCGTCGTCGTCGTCGGCGGCGACGGCGGCGNCGGCGGCGGCGGACGTGCCGAGGGGGCATTTCGCGGTGTACGTCGGCGNGAGGCGGAAGCGGTTCGTGATCCCGACGGCTTACCTGAAGCACCCGTCGTTCGTGCTGCTGCTGAAGCGGGTGGAGGAGGAATTCGGCTTCGACTGCCACCGCTGCGGTGGCCTCACCATCCCCTGCGCCACCGAGGGCGACTTCGCCTCCTTCGTCGCCGAAGCCATCGCCTCCGACGACCACCACCACCACTAGCTCGCTGTTAATTAGTTAATTAGTAGCTTCTAGTTAATTAGCTAGCTATGACGGCTCGGATTTTTGTGTTCTCTTTTCTTGTTGCTGAGGATTAATTGGAATCCTTCTTGCTGATGAGATCGTTCGTTGTACTACTTGTATGATAACATCATTTGATGGAAAGTTGTTGCCAAAAAAAA]

[+] EMBL AU083558             [TGATGTCGAGGATNCACCCTGGCGAGGANCCGGTCGTCGTCGTCGTCGGCGGCGACGGCGGCGNCGGCGGCGGCGGACGTGCCGAGGGGGCATTTCGCGGTGTACGTCGGCGNGAGGCGGAAGCGGTTCGTGATCCCGACGGCTTACCTGAAGCACCCGTCGTTCGTGCTGCTGCTGAAGCGGGTGGAGGAGGAATTCGGCTTCGACTGCCACCGCTGCGGTGGCCTCACCATCCCCTGCGCCACCGAGGGCGACTTCGCCTCCTTCGTCGCCGAAGCCATCGCCTCCGACGACCACCACCACCACTAGCTCGCTGTTAATTAGTTAATTAGTAGCTTCTAGTTAATTAGCTAGCTATGACGGCTCGGATTTTTGTGTTCTCTTTTCTTGTTGCTGAGGATTAATTGGAATCCTTCTTGCTGATGAGATCGTTCGTTGTACTACTTGTATGATAACATCATTTGATGGAAAGTTGTTGCCAAAAAAAA]




>consensus_3119#0
TGATGTCGAGGATNCACCCTGGCGAGGANCCGGTCGTCGTCGTCGTCGGCGGCGACGGCG
GCGNCGGCGGCGGCGGACGTGCCGAGGGGGCATTTCGCGGTGTACGTCGGCGNGAGGCGG
AAGCGGTTCGTGATCCCGACGGCTTACCTGAAGCACCCGTCGTTCGTGCTGCTGCTGAAG
CGGGTGGAGGAGGAATTCGGCTTCGACTGCCACCGCTGCGGTGGCCTCACCATCCCCTGC
GCCACCGAGGGCGACTTCGCCTCCTTCGTCGCCGAAGCCATCGCCTCCGACGACCACCAC
CACCACTAGCTCGCTGTTAATTAGTTAATTAGTAGCTTCTAGTTAATTAGCTAGCTATGA
CGGCTCGGATTTTTGTGTTCTCTTTTCTTGTTGCTGAGGATTAATTGGAATCCTTCTTGC
TGATGAGATCGTTCGTTGTACTACTTGTATGATAACATCATTTGATGGAAAGTTGTTGCC
AAAAAAAA

consensusID : consensus_3119#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 399
fasta sequence

                              [ACAAACACATACAGCAGCATCACCAGCTCAGTTAATTGCAAGCAAGAATAAACAAGCTCGATCGATCACTGTGATAATATGGCGGGGAAGCTGTACCAGCTGATGTCGAGGATGCACCTGGCGAGGAGCCGGTNGTCGTCGTCGTCGGCGGCGACGGCGGCGGCGGCGGCGGCGGACGTNCCGAGGGGGCATTTCGCGGTGTACGTCGGCGAGAGGCGGAAGCGGTTCGTGATCCCGACGGCTTACCTGAAGCACCCGTCGTTCGTGCTGCTGCTGAAGCGGGTNGAGGAGGAATTCGGCTTTCGACTGCCACCGCTGCGGTGNCCTTCANCATCCCCTGCGGCAACGAGGGGCGAATTTGGCTTCTTTCGTCGCCGAAGCCATTGNCTTCCAAGGGCC]

[+] EMBL OSS14558A            [ACAAACACATACAGCAGCATCACCAGCTCAGTTAATTGCAAGCAAGAATAAACAAGCTCGATCGATCACTGTGATAATATGGCGGGGAAGCTGTACCAGCTGATGTCGAGGATGCACCTGGCGAGGAGCCGGTNGTCGTCGTCGTCGGCGGCGACGGCGGCGGCGGCGGCGGCGGACGTNCCGAGGGGGCATTTCGCGGTGTACGTCGGCGAGAGGCGGAAGCGGTTCGTGATCCCGACGGCTTACCTGAAGCACCCGTCGTTCGTGCTGCTGCTGAAGCGGGTNGAGGAGGAATTCGGCTTTCGACTGCCACCGCTGCGGTGNCCTTCANCATCCCCTGCGGCAACGAGGGGCGAATTTGGCTTCTTTCGTCGCCGAAGCCATTGNCTTCCAAGGGCC]




>consensus_3119#1
ACAAACACATACAGCAGCATCACCAGCTCAGTTAATTGCAAGCAAGAATAAACAAGCTCG
ATCGATCACTGTGATAATATGGCGGGGAAGCTGTACCAGCTGATGTCGAGGATGCACCTG
GCGAGGAGCCGGTNGTCGTCGTCGTCGGCGGCGACGGCGGCGGCGGCGGCGGCGGACGTN
CCGAGGGGGCATTTCGCGGTGTACGTCGGCGAGAGGCGGAAGCGGTTCGTGATCCCGACG
GCTTACCTGAAGCACCCGTCGTTCGTGCTGCTGCTGAAGCGGGTNGAGGAGGAATTCGGC
TTTCGACTGCCACCGCTGCGGTGNCCTTCANCATCCCCTGCGGCAACGAGGGGCGAATTT
GGCTTCTTTCGTCGCCGAAGCCATTGNCTTCCAAGGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3119#0      ------------------------------------------------------------
consensus_3119#1      ACAAACACATACAGCAGCATCACCAGCTCAGTTAATTGCAAGCAAGAATAAACAAGCTCG 60
                                                                                  

consensus_3119#0      ----------------------------------------TGATGTCGAGGATNCACCCT 20
consensus_3119#1      ATCGATCACTGTGATAATATGGCGGGGAAGCTGTACCAGCTGATGTCGAGGATGCACC-T 119
                                                              ************* **** *

consensus_3119#0      GGCGAGGANCCGGTCGTCGTCGTCGTCGGCGGCGACGGCGGCGNCGGCGGCGGCGGACGT 80
consensus_3119#1      GGCGAGGAGCCGGTNGTCGTCGTCGTCGGCGGCGACGGCGGCGGCGGCGGCGGCGGACGT 179
                      ******** ***** **************************** ****************

consensus_3119#0      GCCGAGGGGGCATTTCGCGGTGTACGTCGGCGNGAGGCGGAAGCGGTTCGTGATCCCGAC 140
consensus_3119#1      NCCGAGGGGGCATTTCGCGGTGTACGTCGGCGAGAGGCGGAAGCGGTTCGTGATCCCGAC 239
                       ******************************* ***************************

consensus_3119#0      GGCTTACCTGAAGCACCCGTCGTTCGTGCTGCTGCTGAAGCGGGTGGAGGAGGAATTCGG 200
consensus_3119#1      GGCTTACCTGAAGCACCCGTCGTTCGTGCTGCTGCTGAAGCGGGTNGAGGAGGAATTCGG 299
                      ********************************************* **************

consensus_3119#0      CTT-CGACTGCCACCGCTGCGGTGGCCT-CACCATCCCCTGCGCCACCGAGGGC--GACT 256
consensus_3119#1      CTTTCGACTGCCACCGCTGCGGTGNCCTTCANCATCCCCTGCGGCAACGAGGGGCGAATT 359
                      *** ******************** *** ** *********** ** ******    * *

consensus_3119#0      TCGCCTCCTTCGTCGCCGAAGCCATCGCCT-CCGACGACCACCACCACCACTAGCTCGCT 315
consensus_3119#1      TGGCTTCTTTCGTCGCCGAAGCCATTGNCTTCCAAGGGCC-------------------- 399
                      * ** ** ***************** * ** ** * * **                    

consensus_3119#0      GTTAATTAGTTAATTAGTAGCTTCTAGTTAATTAGCTAGCTATGACGGCTCGGATTTTTG 375
consensus_3119#1      ------------------------------------------------------------
                                                                                  

consensus_3119#0      TGTTCTCTTTTCTTGTTGCTGAGGATTAATTGGAATCCTTCTTGCTGATGAGATCGTTCG 435
consensus_3119#1      ------------------------------------------------------------
                                                                                  

consensus_3119#0      TTGTACTACTTGTATGATAACATCATTTGATGGAAAGTTGTTGCCAAAAAAAA 488
consensus_3119#1      -----------------------------------------------------