cluster # 3120

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Oryza sativa
cluster # 3120 cluster # 3120 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3120#0 length = 516 sequences # 1

consensus_3120#1 length = 386 sequences # 1

consensusID : consensus_3120#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence

                              [CTAGGGTTGCGACGCTATCGTCGGCTCCGTGCTTTAGTGGTTCGGCGAAGGATGGCGCAGCACTTTGGATAGTGGATGCCTAGGAATTTTGACGAAGTTGAATCGATCCCGTTGATTCATGGTCTGGTTGGCTAGTTCCGACTATACGACGAATGACACAATGGGCTACAAGTTGCGTGTGACATCAGCTCACCTGAAATTGATGAAGATGGCACCCATGGAGGTTTGCATCAACGGCGCACTAGGGGCGGCAGTGACTGGTAGACTTCCACTGGTCTTTTCTTTTTTTGTTGTTTCTCCTCCTGTATTGAGGTGTGAGTCTAAGTAACTCTTATATCACTTTTGGCTGTGTATATCCTTCGTAAATATAGAGGCCGGATTAATGAAAATCTCCACTGGTCTTTTCTTTGTTTGGTTGTTTCTTCTCCTTATTGAGGTGTGAGTCTAAGTAACTCTTATATCATTTTGGCTGTGTATATCCTTCGTAAATATAGAGGCCGGATTAATGAAAAAAAA]

[+] EMBL BI801681             [CTAGGGTTGCGACGCTATCGTCGGCTCCGTGCTTTAGTGGTTCGGCGAAGGATGGCGCAGCACTTTGGATAGTGGATGCCTAGGAATTTTGACGAAGTTGAATCGATCCCGTTGATTCATGGTCTGGTTGGCTAGTTCCGACTATACGACGAATGACACAATGGGCTACAAGTTGCGTGTGACATCAGCTCACCTGAAATTGATGAAGATGGCACCCATGGAGGTTTGCATCAACGGCGCACTAGGGGCGGCAGTGACTGGTAGACTTCCACTGGTCTTTTCTTTTTTTGTTGTTTCTCCTCCTGTATTGAGGTGTGAGTCTAAGTAACTCTTATATCACTTTTGGCTGTGTATATCCTTCGTAAATATAGAGGCCGGATTAATGAAAATCTCCACTGGTCTTTTCTTTGTTTGGTTGTTTCTTCTCCTTATTGAGGTGTGAGTCTAAGTAACTCTTATATCATTTTGGCTGTGTATATCCTTCGTAAATATAGAGGCCGGATTAATGAAAAAAAA]




>consensus_3120#0
CTAGGGTTGCGACGCTATCGTCGGCTCCGTGCTTTAGTGGTTCGGCGAAGGATGGCGCAG
CACTTTGGATAGTGGATGCCTAGGAATTTTGACGAAGTTGAATCGATCCCGTTGATTCAT
GGTCTGGTTGGCTAGTTCCGACTATACGACGAATGACACAATGGGCTACAAGTTGCGTGT
GACATCAGCTCACCTGAAATTGATGAAGATGGCACCCATGGAGGTTTGCATCAACGGCGC
ACTAGGGGCGGCAGTGACTGGTAGACTTCCACTGGTCTTTTCTTTTTTTGTTGTTTCTCC
TCCTGTATTGAGGTGTGAGTCTAAGTAACTCTTATATCACTTTTGGCTGTGTATATCCTT
CGTAAATATAGAGGCCGGATTAATGAAAATCTCCACTGGTCTTTTCTTTGTTTGGTTGTT
TCTTCTCCTTATTGAGGTGTGAGTCTAAGTAACTCTTATATCATTTTGGCTGTGTATATC
CTTCGTAAATATAGAGGCCGGATTAATGAAAAAAAA

consensusID : consensus_3120#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 386
fasta sequence

                              [TTGCGGCGAAGGATGGCGGCAGCACATTTGGATAGTGGATGCCTAGGAAGTTTGACGAAGTTGAAGTCGATCCCGTGTGATTCATGTCTGGTTGGCTAGTTCCGACTATCGTCGAATGACAAAGTGGGCTAACAAGTTGCGTGTGACATCAGCTCACACTGAAATTGATGAAGATGGCACCAATGGAGGTTTGCATCAACAGGCAGCACTAGGGGCAGGCAGTGACTGGTAGACTTCCACTGGTCTTTTCTTTTTTTGGTTGTTTCTCCTCCTTATTGAGGTGTGAGTCTAAGTAACTCTTATATCATTTTGCTTGTATATCCTTCGTAAATATAGAGCCGGATTAATGAAAATCTCCACTGTCTTTTCTTTTTTTAAAAAAAAAA]

[+] EMBL BI802154             [TTGCGGCGAAGGATGGCGGCAGCACATTTGGATAGTGGATGCCTAGGAAGTTTGACGAAGTTGAAGTCGATCCCGTGTGATTCATGTCTGGTTGGCTAGTTCCGACTATCGTCGAATGACAAAGTGGGCTAACAAGTTGCGTGTGACATCAGCTCACACTGAAATTGATGAAGATGGCACCAATGGAGGTTTGCATCAACAGGCAGCACTAGGGGCAGGCAGTGACTGGTAGACTTCCACTGGTCTTTTCTTTTTTTGGTTGTTTCTCCTCCTTATTGAGGTGTGAGTCTAAGTAACTCTTATATCATTTTGCTTGTATATCCTTCGTAAATATAGAGCCGGATTAATGAAAATCTCCACTGTCTTTTCTTTTTTTAAAAAAAAAA]




>consensus_3120#1
TTGCGGCGAAGGATGGCGGCAGCACATTTGGATAGTGGATGCCTAGGAAGTTTGACGAAG
TTGAAGTCGATCCCGTGTGATTCATGTCTGGTTGGCTAGTTCCGACTATCGTCGAATGAC
AAAGTGGGCTAACAAGTTGCGTGTGACATCAGCTCACACTGAAATTGATGAAGATGGCAC
CAATGGAGGTTTGCATCAACAGGCAGCACTAGGGGCAGGCAGTGACTGGTAGACTTCCAC
TGGTCTTTTCTTTTTTTGGTTGTTTCTCCTCCTTATTGAGGTGTGAGTCTAAGTAACTCT
TATATCATTTTGCTTGTATATCCTTCGTAAATATAGAGCCGGATTAATGAAAATCTCCAC
TGTCTTTTCTTTTTTTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3120#0      CTAGGGTTGCGACGCTATCGTCGGCTCCGTGCTTTAGTGGTTCGGCGAAGGATGGCG-CA 59
consensus_3120#1      ---------------------------------------TTGCGGCGAAGGATGGCGGCA 21
                                                              * *************** **

consensus_3120#0      GCAC-TTTGGATAGTGGATGCCTAGGAATTTTGACGAAGTTGAA-TCGATCCCGT-TGAT 116
consensus_3120#1      GCACATTTGGATAGTGGATGCCTAGGAAGTTTGACGAAGTTGAAGTCGATCCCGTGTGAT 81
                      **** *********************** *************** ********** ****

consensus_3120#0      TCATGGTCTGGTTGGCTAGTTCCGACTATACGACGAATGACACAATGGGCTA-CAAGTTG 175
consensus_3120#1      TCATG-TCTGGTTGGCTAGTTCCGACTAT-CGTCGAATGACAAAGTGGGCTAACAAGTTG 139
                      ***** *********************** ** ********* * ******* *******

consensus_3120#0      CGTGTGACATCAGCTCAC-CTGAAATTGATGAAGATGGCACCCATGGAGGTTTGCATCAA 234
consensus_3120#1      CGTGTGACATCAGCTCACACTGAAATTGATGAAGATGGCACCAATGGAGGTTTGCATCAA 199
                      ****************** *********************** *****************

consensus_3120#0      CGGC--GCACTAGGGGC-GGCAGTGACTGGTAGACTTCCACTGGTCTTTTCTTTTTTTG- 290
consensus_3120#1      CAGGCAGCACTAGGGGCAGGCAGTGACTGGTAGACTTCCACTGGTCTTTTCTTTTTTTGG 259
                      * *   *********** ***************************************** 

consensus_3120#0      TTGTTTCTCCTCCTGTATTGAGGTGTGAGTCTAAGTAACTCTTATATCACTTTTGGCTGT 350
consensus_3120#1      TTGTTTCTCCTCCT-TATTGAGGTGTGAGTCTAAGTAACTCTTATATCATTTT--GCT-T 315
                      ************** ********************************** ***  *** *

consensus_3120#0      GTATATCCTTCGTAAATATAGAGGCCGGATTAATGAAAATCTCCACTGGTCTTTTCTTTG 410
consensus_3120#1      GTATATCCTTCGTAAATATAGAG-CCGGATTAATGAAAATCTCCACTG-TCTTTTCTTTT 373
                      *********************** ************************ ********** 

consensus_3120#0      TTTGGTTGTTTCTTCTCCTTATTGAGGTGTGAGTCTAAGTAACTCTTATATCATTTTGGC 470
consensus_3120#1      TTTAAAAAAAAAA----------------------------------------------- 386
                      ***                                                         

consensus_3120#0      TGTGTATATCCTTCGTAAATATAGAGGCCGGATTAATGAAAAAAAA 516
consensus_3120#1      ----------------------------------------------