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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3134#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 759 fasta sequence
[CGCTGCGGTCGCGTTTGTCTTCCTGTCCCGAATGGCCACATGAGGGCGAAGGCCAGGCGGCGGAGAATCTGAACATATATTCTTCTCCAATCTATCTAGCTCACTCATCACTACCTTCTCCTCCACTACTCATCCATCGGAGCCGATTTGAGAGGGAATGCCTTGTGGTAGCGACGGCTGAAAGACTGGTTGGCTAGATCCACCATAGGGCATCCAAGTCAGTGCCTTGGTAGATCCACCGCAGGATGTCTAGATCAGGAGCAGTGTTAGCAGTCAGTGCCTTGGTAGATCCACCGCAGGATGTCTAGATCAGGAGCAGTGTTAGCCATCGGTTAGTTGGCTCTGGTATGGGAGGTGGTATTTGTAGGAAATGGGGCAGTGGGGGATGGCAGGTGTTGGGGCAGTGCGGATAGCAGGTGCAGCAACATCAAGCATGGCTGAGAGCGAAGGATATCAACGGTAGAGGAAGCAAGCAGGGATCGACTCATATACATGTACTGAAGGTGCAATGTTAGTTTCTTCTGCTGAAAATATGATGACAAAACTGTATAGATGCATATGTTATTTCCTAGCTGCAAGATCATGATTAGATGATGTCATGATTGTGTTCTTTTGTGGGGAGTGTGATATACCTTCTTATGCCAAAGATGATTCGCAAGGGTGCCCGTAGACTTCTTTTTGCTNCGTCCGNCGGAATCGACTTCTTCTACTTCCGTCGTCGGAATCGACTTTCTTTCCGGAATCGACTAATGTCGCATG]
[+] EMBL CA765578 [CGCTGCGGTCGCGTTTGTCTTCCTGTCCCGAATGGCCACATGAGGGCGAAGGCCAGGCGGCGGAGAATCTGAACATATATTCTTCTCCAATCTATCTAGCTCACTCATCACTACCTTCTCCTCCACTACTCATCCATCGGAGCCGATTTGAGAGGGAATGCCTTGTGGTAGCGACGGCTGAAAGACTGGTTGGCTAGATCCACCATAGGGCATCCAAGTCAGTGCCTTGGTAGATCCACCGCAGGATGTCTAGATCAGGAGCAGTGTTAGCAGTCAGTGCCTTGGTAGATCCACCGCAGGATGTCTAGATCAGGAGCAGTGTTAGCCATCGGTTAGTTGGCTCTGGTATGGGAGGTGGTATTTGTAGGAAATGGGGCAGTGGGGGATGGCAGGTGTTGGGGCAGTGCGGATAGCAGGTGCAGCAACATCAAGCATGGCTGAGAGCGAAGGATATCAACGGTAGAGGAAGCAAGCAGGGATCGACTCATATACATGTACTGAAGGTGCAATGTTAGTTTCTTCTGCTGAAAATATGATGACAAAACTGTATAGATGCATATGTTATTTCCTAGCTGCAAGATCATGATTAGATGATGTCATGATTGTGTTCTTTTGTGGGGAGTGTGATATACCTTCTTATGCCAAAGATGATTCGCAAGGGTGCCCGTAGACTTCTTTTTGCTNCGTCCGNCGGAATCGACTTCTTCTACTTCCGTCGTCGGAATCGACTTTCTTTCCGGAATCGACTAATGTCGCATG]
consensusID : consensus_3134#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence
[TATTTAGAACATCCAAAGGTTTACAATCATCCTAAGGAGATTCATTATATTTTGGACCAAAGTGTAAAATTGCAGGCACATCGTTATCTCCTCCCAAGCCCTTCCTGGCCACATATCTGCGCTGCGGTCGCGTTTGTCTTCCTGTCCCGAATGGCCACATGAGGGCGNAGGCCAGGCGGCGGAGAATCTGAACATATATTCTTCTCCAATCTATCTAGCTCACTCATCACTACCTTCTCCTCCACTACTCATCCATCGGAGCCGATTTGAGAGGGAATGCCCTTGTGGTAGCGACGGCTGAAAGACTGGTTTGGGTAGATCCACCATAGGGCATCCAAGTCAGTGCCTTGGTAGATCCACCGCAGNATGTCTAGATCAGGGGCATTTTAGCCATCGGTTAATTGGGTCTTGTATGGAGGTGGTATTTTTAGGGAATGGGGCANTTGGGGATGGCAGGTTTTGNGG]
[+] EMBL D42822 [TATTTAGAACATCCAAAGGTTTACAATCATCCTAAGGAGATTCATTATATTTTGGACCAAAGTGTAAAATTGCAGGCACATCGTTATCTCCTCCCAAGCCCTTCCTGGCCACATATCTGCGCTGCGGTCGCGTTTGTCTTCCTGTCCCGAATGGCCACATGAGGGCGNAGGCCAGGCGGCGGAGAATCTGAACATATATTCTTCTCCAATCTATCTAGCTCACTCATCACTACCTTCTCCTCCACTACTCATCCATCGGAGCCGATTTGAGAGGGAATGCCCTTGTGGTAGCGACGGCTGAAAGACTGGTTTGGGTAGATCCACCATAGGGCATCCAAGTCAGTGCCTTGGTAGATCCACCGCAGNATGTCTAGATCAGGGGCATTTTAGCCATCGGTTAATTGGGTCTTGTATGGAGGTGGTATTTTTAGGGAATGGGGCANTTGGGGATGGCAGGTTTTGNGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3134#0 ------------------------------------------------------------
consensus_3134#1 TATTTAGAACATCCAAAGGTTTACAATCATCCTAAGGAGATTCATTATATTTTGGACCAA 60
consensus_3134#0 -----------------------------------------------------------C 1
consensus_3134#1 AGTGTAAAATTGCAGGCACATCGTTATCTCCTCCCAAGCCCTTCCTGGCCACATATCTGC 120
*
consensus_3134#0 GCTGCGGTCGCGTTTGTCTTCCTGTCCCGAATGGCCACATGAGGGCGAAGGCCAGGCGGC 61
consensus_3134#1 GCTGCGGTCGCGTTTGTCTTCCTGTCCCGAATGGCCACATGAGGGCGNAGGCCAGGCGGC 180
*********************************************** ************
consensus_3134#0 GGAGAATCTGAACATATATTCTTCTCCAATCTATCTAGCTCACTCATCACTACCTTCTCC 121
consensus_3134#1 GGAGAATCTGAACATATATTCTTCTCCAATCTATCTAGCTCACTCATCACTACCTTCTCC 240
************************************************************
consensus_3134#0 TCCACTACTCATCCATCGGAGCCGATTTGAGAGGGAATGCC-TTGTGGTAGCGACGGCTG 180
consensus_3134#1 TCCACTACTCATCCATCGGAGCCGATTTGAGAGGGAATGCCCTTGTGGTAGCGACGGCTG 300
***************************************** ******************
consensus_3134#0 AAAGACTGGTT-GGCTAGATCCACCATAGGGCATCCAAGTCAGTGCCTTGGTAGATCCAC 239
consensus_3134#1 AAAGACTGGTTTGGGTAGATCCACCATAGGGCATCCAAGTCAGTGCCTTGGTAGATCCAC 360
*********** ** *********************************************
consensus_3134#0 CGCAGGATGTCTAGATCAGGAGCAGTGTTAGCAGTCAGTGCCTTGGTAGATCCACCGCAG 299
consensus_3134#1 CGCAGNATGTCTAGATCAGGGGCATT---------------------------------- 386
***** ************** *** *
consensus_3134#0 GATGTCTAGATCAGGAGCAGTGTTAGCCATCGGTTAGTTGGCTCTGGTATGGGAGGTGGT 359
consensus_3134#1 ----------------------TTAGCCATCGGTTAATTGGGTCTTGTATGG-AGGTGGT 423
************** **** *** ****** *******
consensus_3134#0 ATTTGTAGGAAATGGGGCAGTGGGGGATGGCAGGTGTTGGGGCAGTGCGGATAGCAGGTG 419
consensus_3134#1 ATTTTTAGGGAATGGGGCANTTGGGGATGGCAGGTTTTGNGG------------------ 465
**** **** ********* * ************* *** **
consensus_3134#0 CAGCAACATCAAGCATGGCTGAGAGCGAAGGATATCAACGGTAGAGGAAGCAAGCAGGGA 479
consensus_3134#1 ------------------------------------------------------------
consensus_3134#0 TCGACTCATATACATGTACTGAAGGTGCAATGTTAGTTTCTTCTGCTGAAAATATGATGA 539
consensus_3134#1 ------------------------------------------------------------
consensus_3134#0 CAAAACTGTATAGATGCATATGTTATTTCCTAGCTGCAAGATCATGATTAGATGATGTCA 599
consensus_3134#1 ------------------------------------------------------------
consensus_3134#0 TGATTGTGTTCTTTTGTGGGGAGTGTGATATACCTTCTTATGCCAAAGATGATTCGCAAG 659
consensus_3134#1 ------------------------------------------------------------
consensus_3134#0 GGTGCCCGTAGACTTCTTTTTGCTNCGTCCGNCGGAATCGACTTCTTCTACTTCCGTCGT 719
consensus_3134#1 ------------------------------------------------------------
consensus_3134#0 CGGAATCGACTTTCTTTCCGGAATCGACTAATGTCGCATG 759
consensus_3134#1 ----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||