These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3148#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2040 fasta sequence [TACTACCTCGTCCGCCTCCATCTCCCTCCACCACTCCAGCTTCCACCCACCCTGCCTCTACCTCGAGGCCGCCATGACCGCCGCGTCGGTGGCGCCGTCGCGTGCCGCGCCACCGCCGGCCCAGTGGGCAGCCAAGAGCGGCCGTGGGAGTCCTACGACCGCGGCATTCAGCACCACGCAGGCTCCGACCTCGCCTCCTCCCTCCGCCTGCTCGCCGACATGCAGGCCGCCGGGCTGCGCCCCAGCGGCGCGGCGTACGCGCGCCTCATCCGGGCGCTCGCCCGCGCCGGCCGGACGCTCGAGGCCGAGGCGCTCCTCCTCGAGATGCGCCGCCTCGGGCTCCGCCCGGACGCCGCGCACTACAACGCCCTCCTCGAGGGGCTCCTCTCCACGGCGCACCTCCGCCTCGCCGACCGCCTCCTCCTCCAGATGGCCGACGACGGCGTCGCGCGGAACCGGCGCACGTACATGCTGCTGCTGAACGCGTACGCCCGGGCCGGCCGCCTCGAGGACTCGTGGTGGGTTCTCGGCGAGATGAAGCGCCGGGGTATTCGGCTTGACACCGCCGGGTACAGCACGCTGGTGCGGCTGTACAGGGACAATGGCATGTGGAAGAAGGCCACCGACCTCATCATGGAGATGCAGGAGCTCGGGGTGGAGCTCGATGTCAAGATTTACAACGGGTTGATCGATACATTCGGCAAGTATGGGCAGTTAGCGGATGCACGCAAGGTGTTCGACAAAATGTGCGCAGAAGGGGTCAAGCCTGATATTACTACATGGAATTCTTTGATTCGGTGGCATTGTCGTGTGGGGAATACGAAACGTGCTCTGCGATTCTTCGCTGCAATGCAGGAGGAAGGAATGTATCCGGATCCTAAAATCTTTGTTACAATCATCAGCAGGTTGGGGGAACAGGGGAAGTGGGACGAAATTAAGAAGCTGTTTCATGGCATGAGGAATCGAGGGCTCAAGGAGAGTGGTGCAGTGTATGCAGTTTTGGTTGACATTTATGGACAATACGGCCATTTTCGTGATGCCCATGACTGTGTAGCTGCTCTCAAAGCTGAGAATCTGCAGCTTTCACCTAGCATCTTTTGTGTCTTGGCCAATGCATATGCTCAACAGGGTTTGTGTGAACAAACTGTAAATGTTCTTCAATTGATGGAGGCAGAAGGAATTGAGCCAAATCTTGTTATGCTGAATTTGCTAATAAATGCTTTTGGTACTGCTGGAAGGCATTTGGAGGCACTTGCTGTACTCCAGCATATCAAGGATAGCGGTATGAGCCCAGATGTTGTGACTTACACAACACTTATGAAGGCTTTCATGAGAGCAAAGAAATTTGAAAAGGTGTCAGAAGTATATAAGGAGATGGAGGGTGCTGGTTGTACTCCTGATAGAAAAGCTAGAGAAATGCTGAATGACGCCTCTATTGTACTGGAACAAAGGGGAATGTTACATTTGTAGCCACCCTTTTGAATTCCAGGGATGGATGCTTTGGCGGGTTATCGAAATTGGAATACCTACAATTCTGAAGTGGCTCAAGCTTCAATTTCTATAACTTGAAGAATACCATATCCCTTTTTTGCTTGCCATGCTGAATGTCTGAAACAGATACGATATATAGTAAACACAGGTGAGTTTTGGCTTGCTCAGGAATATATAGACACTTCTGCAGTTCTTTTTCTCCCTCAGTATTGTAAGATGTCACTCAATAAAATTTCTCCAAGCCTCCAATTATCTTTTTAATTTGTTTACTGCAGAGTGTGCCAAAAAAGACAGAAAGCAACATTATTTAGAAAGAGAAGGTTAGGCTCCTTTCAAGAAAAAGAGAGAGAGAAAGTTAGGTCACAACTTTATGGAACATATCAACGTTTGAAATCTTGTATAGTTTATCCTACAACTGTAAGATGACCTCTTGCTTTAAACATTGCAATAGCTCGGCTCCTCTATTCGCTTCAGATTTACCTATTACTAAATTTCATGGGAGAAAACAATGAGGCATCAAGCCCTCAATTTATCTTAAGCATAGAAATA] [+] EMBL AK063542 [TACTACCTCGTCCGCCTCCATCTCCCTCCACCACTCCAGCTTCCACCCACCCTGCCTCTACCTCGAGGCCGCCATGACCGCCGCGTCGGTGGCGCCGTCGCGTGCCGCGCCACCGCCGGCCCAGTGGGCAGCCAAGAGCGGCCGTGGGAGTCCTACGACCGCGGCATTCAGCACCACGCAGGCTCCGACCTCGCCTCCTCCCTCCGCCTGCTCGCCGACATGCAGGCCGCCGGGCTGCGCCCCAGCGGCGCGGCGTACGCGCGCCTCATCCGGGCGCTCGCCCGCGCCGGCCGGACGCTCGAGGCCGAGGCGCTCCTCCTCGAGATGCGCCGCCTCGGGCTCCGCCCGGACGCCGCGCACTACAACGCCCTCCTCGAGGGGCTCCTCTCCACGGCGCACCTCCGCCTCGCCGACCGCCTCCTCCTCCAGATGGCCGACGACGGCGTCGCGCGGAACCGGCGCACGTACATGCTGCTGCTGAACGCGTACGCCCGGGCCGGCCGCCTCGAGGACTCGTGGTGGGTTCTCGGCGAGATGAAGCGCCGGGGTATTCGGCTTGACACCGCCGGGTACAGCACGCTGGTGCGGCTGTACAGGGACAATGGCATGTGGAAGAAGGCCACCGACCTCATCATGGAGATGCAGGAGCTCGGGGTGGAGCTCGATGTCAAGATTTACAACGGGTTGATCGATACATTCGGCAAGTATGGGCAGTTAGCGGATGCACGCAAGGTGTTCGACAAAATGTGCGCAGAAGGGGTCAAGCCTGATATTACTACATGGAATTCTTTGATTCGGTGGCATTGTCGTGTGGGGAATACGAAACGTGCTCTGCGATTCTTCGCTGCAATGCAGGAGGAAGGAATGTATCCGGATCCTAAAATCTTTGTTACAATCATCAGCAGGTTGGGGGAACAGGGGAAGTGGGACGAAATTAAGAAGCTGTTTCATGGCATGAGGAATCGAGGGCTCAAGGAGAGTGGTGCAGTGTATGCAGTTTTGGTTGACATTTATGGACAATACGGCCATTTTCGTGATGCCCATGACTGTGTAGCTGCTCTCAAAGCTGAGAATCTGCAGCTTTCACCTAGCATCTTTTGTGTCTTGGCCAATGCATATGCTCAACAGGGTTTGTGTGAACAAACTGTAAATGTTCTTCAATTGATGGAGGCAGAAGGAATTGAGCCAAATCTTGTTATGCTGAATTTGCTAATAAATGCTTTTGGTACTGCTGGAAGGCATTTGGAGGCACTTGCTGTACTCCAGCATATCAAGGATAGCGGTATGAGCCCAGATGTTGTGACTTACACAACACTTATGAAGGCTTTCATGAGAGCAAAGAAATTTGAAAAGGTGTCAGAAGTATATAAGGAGATGGAGGGTGCTGGTTGTACTCCTGATAGAAAAGCTAGAGAAATGCTGAATGACGCCTCTATTGTACTGGAACAAAGGGGAATGTTACATTTGTAGCCACCCTTTTGAATTCCAGGGATGGATGCTTTGGCGGGTTATCGAAATTGGAATACCTACAATTCTGAAGTGGCTCAAGCTTCAATTTCTATAACTTGAAGAATACCATATCCCTTTTTTGCTTGCCATGCTGAATGTCTGAAACAGATACGATATATAGTAAACACAGGTGAGTTTTGGCTTGCTCAGGAATATATAGACACTTCTGCAGTTCTTTTTCTCCCTCAGTATTGTAAGATGTCACTCAATAAAATTTCTCCAAGCCTCCAATTATCTTTTTAATTTGTTTACTGCAGAGTGTGCCAAAAAAGACAGAAAGCAACATTATTTAGAAAGAGAAGGTTAGGCTCCTTTCAAGAAAAAGAGAGAGAGAAAGTTAGGTCACAACTTTATGGAACATATCAACGTTTGAAATCTTGTATAGTTTATCCTACAACTGTAAGATGACCTCTTGCTTTAAACATTGCAATAGCTCGGCTCCTCTATTCGCTTCAGATTTACCTATTACTAAATTTCATGGGAGAAAACAATGAGGCATCAAGCCCTCAATTTATCTTAAGCATAGAAATA] consensusID : consensus_3148#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence [ACCTAGCATCTTTTGTGTCTTGGCCAATGCATATGCTCAACAGGGTTTGTGTGAACAAACTGTAAATGTTCTTCAATTGATGGAGGCAGAAGGAATTGAGCCAAATCTTGTTATGCTGAATTTGCTAATAAATGCTTTTGGTACTGCTGGAAGGCATTTGGAGGCACTTGCTGTACTCCAGCATATCAAGGATAGCGGTATGAGCCCAGATGTTGTGACTTACACAACACTTATGAAGGCTTTCATGAGAGCAAAGAAATTTGAAAAGGTGTCAGAAGTATATAAGGAGATGGAGGGTGCTTGGTTGTACTCCTGATAGAAAAGCTAGAGAAATGCTGAATGACGCCTCCATTGTACTGGAACAAAGGGGAATGTTACATTTGTAGCCACCCTTTTGAATTCCAGGGATGGATGCTTTGGCGGGTTATCGAAATTGGAATACCTACAATTCTGAAGTGGCTCAAGCTTCAATTTCTATAACTTGAAGAATACCATATCCCTTTTTTGCTTGCCATGCTGAATGTCTGAAACAGATACGATATATAGTAAACACAGAGTGTGCCAAAAAAGACAGAAAGCAACATTATTTCGAAAGGAGAAGAGGAAGAATATCGAACTACATTTCANGGTGCACAAAGG] [+] EMBL CA765633 [ACCTAGCATCTTTTGTGTCTTGGCCAATGCATATGCTCAACAGGGTTTGTGTGAACAAACTGTAAATGTTCTTCAATTGATGGAGGCAGAAGGAATTGAGCCAAATCTTGTTATGCTGAATTTGCTAATAAATGCTTTTGGTACTGCTGGAAGGCATTTGGAGGCACTTGCTGTACTCCAGCATATCAAGGATAGCGGTATGAGCCCAGATGTTGTGACTTACACAACACTTATGAAGGCTTTCATGAGAGCAAAGAAATTTGAAAAGGTGTCAGAAGTATATAAGGAGATGGAGGGTGCTTGGTTGTACTCCTGATAGAAAAGCTAGAGAAATGCTGAATGACGCCTCCATTGTACTGGAACAAAGGGGAATGTTACATTTGTAGCCACCCTTTTGAATTCCAGGGATGGATGCTTTGGCGGGTTATCGAAATTGGAATACCTACAATTCTGAAGTGGCTCAAGCTTCAATTTCTATAACTTGAAGAATACCATATCCCTTTTTTGCTTGCCATGCTGAATGTCTGAAACAGATACGATATATAGTAAACACAGAGTGTGCCAAAAAAGACAGAAAGCAACATTATTTCGAAAGGAGAAGAGGAAGAATATCGAACTACATTTCANGGTGCACAAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3148#0 TACTACCTCGTCCGCCTCCATCTCCCTCCACCACTCCAGCTTCCACCCACCCTGCCTCTA 60 consensus_3148#1 ------------------------------------------------------------ consensus_3148#0 CCTCGAGGCCGCCATGACCGCCGCGTCGGTGGCGCCGTCGCGTGCCGCGCCACCGCCGGC 120 consensus_3148#1 ------------------------------------------------------------ consensus_3148#0 CCAGTGGGCAGCCAAGAGCGGCCGTGGGAGTCCTACGACCGCGGCATTCAGCACCACGCA 180 consensus_3148#1 ------------------------------------------------------------ consensus_3148#0 GGCTCCGACCTCGCCTCCTCCCTCCGCCTGCTCGCCGACATGCAGGCCGCCGGGCTGCGC 240 consensus_3148#1 ------------------------------------------------------------ consensus_3148#0 CCCAGCGGCGCGGCGTACGCGCGCCTCATCCGGGCGCTCGCCCGCGCCGGCCGGACGCTC 300 consensus_3148#1 ------------------------------------------------------------ consensus_3148#0 GAGGCCGAGGCGCTCCTCCTCGAGATGCGCCGCCTCGGGCTCCGCCCGGACGCCGCGCAC 360 consensus_3148#1 ------------------------------------------------------------ consensus_3148#0 TACAACGCCCTCCTCGAGGGGCTCCTCTCCACGGCGCACCTCCGCCTCGCCGACCGCCTC 420 consensus_3148#1 ------------------------------------------------------------ consensus_3148#0 CTCCTCCAGATGGCCGACGACGGCGTCGCGCGGAACCGGCGCACGTACATGCTGCTGCTG 480 consensus_3148#1 ------------------------------------------------------------ consensus_3148#0 AACGCGTACGCCCGGGCCGGCCGCCTCGAGGACTCGTGGTGGGTTCTCGGCGAGATGAAG 540 consensus_3148#1 ------------------------------------------------------------ consensus_3148#0 CGCCGGGGTATTCGGCTTGACACCGCCGGGTACAGCACGCTGGTGCGGCTGTACAGGGAC 600 consensus_3148#1 ------------------------------------------------------------ consensus_3148#0 AATGGCATGTGGAAGAAGGCCACCGACCTCATCATGGAGATGCAGGAGCTCGGGGTGGAG 660 consensus_3148#1 ------------------------------------------------------------ consensus_3148#0 CTCGATGTCAAGATTTACAACGGGTTGATCGATACATTCGGCAAGTATGGGCAGTTAGCG 720 consensus_3148#1 ------------------------------------------------------------ consensus_3148#0 GATGCACGCAAGGTGTTCGACAAAATGTGCGCAGAAGGGGTCAAGCCTGATATTACTACA 780 consensus_3148#1 ------------------------------------------------------------ consensus_3148#0 TGGAATTCTTTGATTCGGTGGCATTGTCGTGTGGGGAATACGAAACGTGCTCTGCGATTC 840 consensus_3148#1 ------------------------------------------------------------ consensus_3148#0 TTCGCTGCAATGCAGGAGGAAGGAATGTATCCGGATCCTAAAATCTTTGTTACAATCATC 900 consensus_3148#1 ------------------------------------------------------------ consensus_3148#0 AGCAGGTTGGGGGAACAGGGGAAGTGGGACGAAATTAAGAAGCTGTTTCATGGCATGAGG 960 consensus_3148#1 ------------------------------------------------------------ consensus_3148#0 AATCGAGGGCTCAAGGAGAGTGGTGCAGTGTATGCAGTTTTGGTTGACATTTATGGACAA 1020 consensus_3148#1 ------------------------------------------------------------ consensus_3148#0 TACGGCCATTTTCGTGATGCCCATGACTGTGTAGCTGCTCTCAAAGCTGAGAATCTGCAG 1080 consensus_3148#1 ------------------------------------------------------------ consensus_3148#0 CTTTCACCTAGCATCTTTTGTGTCTTGGCCAATGCATATGCTCAACAGGGTTTGTGTGAA 1140 consensus_3148#1 -----ACCTAGCATCTTTTGTGTCTTGGCCAATGCATATGCTCAACAGGGTTTGTGTGAA 55 ******************************************************* consensus_3148#0 CAAACTGTAAATGTTCTTCAATTGATGGAGGCAGAAGGAATTGAGCCAAATCTTGTTATG 1200 consensus_3148#1 CAAACTGTAAATGTTCTTCAATTGATGGAGGCAGAAGGAATTGAGCCAAATCTTGTTATG 115 ************************************************************ consensus_3148#0 CTGAATTTGCTAATAAATGCTTTTGGTACTGCTGGAAGGCATTTGGAGGCACTTGCTGTA 1260 consensus_3148#1 CTGAATTTGCTAATAAATGCTTTTGGTACTGCTGGAAGGCATTTGGAGGCACTTGCTGTA 175 ************************************************************ consensus_3148#0 CTCCAGCATATCAAGGATAGCGGTATGAGCCCAGATGTTGTGACTTACACAACACTTATG 1320 consensus_3148#1 CTCCAGCATATCAAGGATAGCGGTATGAGCCCAGATGTTGTGACTTACACAACACTTATG 235 ************************************************************ consensus_3148#0 AAGGCTTTCATGAGAGCAAAGAAATTTGAAAAGGTGTCAGAAGTATATAAGGAGATGGAG 1380 consensus_3148#1 AAGGCTTTCATGAGAGCAAAGAAATTTGAAAAGGTGTCAGAAGTATATAAGGAGATGGAG 295 ************************************************************ consensus_3148#0 GGTGCT-GGTTGTACTCCTGATAGAAAAGCTAGAGAAATGCTGAATGACGCCTCTATTGT 1439 consensus_3148#1 GGTGCTTGGTTGTACTCCTGATAGAAAAGCTAGAGAAATGCTGAATGACGCCTCCATTGT 355 ****** *********************************************** ***** consensus_3148#0 ACTGGAACAAAGGGGAATGTTACATTTGTAGCCACCCTTTTGAATTCCAGGGATGGATGC 1499 consensus_3148#1 ACTGGAACAAAGGGGAATGTTACATTTGTAGCCACCCTTTTGAATTCCAGGGATGGATGC 415 ************************************************************ consensus_3148#0 TTTGGCGGGTTATCGAAATTGGAATACCTACAATTCTGAAGTGGCTCAAGCTTCAATTTC 1559 consensus_3148#1 TTTGGCGGGTTATCGAAATTGGAATACCTACAATTCTGAAGTGGCTCAAGCTTCAATTTC 475 ************************************************************ consensus_3148#0 TATAACTTGAAGAATACCATATCCCTTTTTTGCTTGCCATGCTGAATGTCTGAAACAGAT 1619 consensus_3148#1 TATAACTTGAAGAATACCATATCCCTTTTTTGCTTGCCATGCTGAATGTCTGAAACAGAT 535 ************************************************************ consensus_3148#0 ACGATATATAGTAAACACAGGTGAGTTTTGGCTTGCTCAGGAATATATAGACACTTCTGC 1679 consensus_3148#1 ACGATATATAGTAAACACAGA---------GTGTGCCAAAAAAGACAGAAA-------GC 579 ******************** * *** * ** * * * * ** consensus_3148#0 AGTTCTTTTTCTCCCTCAGTATTGTAAGATGTCACTCAATAAAATTTCTCCAAGCCTCCA 1739 consensus_3148#1 AACATTATTTCGAAAGGAGAAGAGGAAGAA--TATCGAACTACATTTCANGGTGCACAAA 637 * * **** ** * * **** * ** * ***** ** * consensus_3148#0 ATTATCTTTTTAATTTGTTTACTGCAGAGTGTGCCAAAAAAGACAGAAAGCAACATTATT 1799 consensus_3148#1 GG---------------------------------------------------------- 639 consensus_3148#0 TAGAAAGAGAAGGTTAGGCTCCTTTCAAGAAAAAGAGAGAGAGAAAGTTAGGTCACAACT 1859 consensus_3148#1 ------------------------------------------------------------ consensus_3148#0 TTATGGAACATATCAACGTTTGAAATCTTGTATAGTTTATCCTACAACTGTAAGATGACC 1919 consensus_3148#1 ------------------------------------------------------------ consensus_3148#0 TCTTGCTTTAAACATTGCAATAGCTCGGCTCCTCTATTCGCTTCAGATTTACCTATTACT 1979 consensus_3148#1 ------------------------------------------------------------ consensus_3148#0 AAATTTCATGGGAGAAAACAATGAGGCATCAAGCCCTCAATTTATCTTAAGCATAGAAAT 2039 consensus_3148#1 ------------------------------------------------------------ consensus_3148#0 A 2040 consensus_3148#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||