cluster # 3150

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Oryza sativa
cluster # 3150 cluster # 3150 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3150#0 length = 957 sequences # 1

consensus_3150#1 length = 84 sequences # 1

consensusID : consensus_3150#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 957
fasta sequence

                              [CCCCTCCACGCCATCCCCGACACCGATCGAGAGAGAGAGATCGCACCGATCGACGTACGGTACGAGACGACCATGGCGCGTCCTCGCTTCGCCACCACGGCGCCATTGTTGGCGCTCGCCGTCCTCGCCGCCGTGGTGTCCGTCGCCGTCGCCACCGCTCCCGCCGGCAAGGACCCCGGCGGCTTCGTCGTCACCGGGCGCGTCTACTGCGACCCCTGCCGCGCCGGCTTCGAGACCAACGTCTCCAAAAGCATCCCAGGGGCGACGGTGTCGGTGGAGTGCAGGCACTACGGGGCGGGGAGGGAGAGCCTGAAGGCGGAGGCGACGACGGACGAGAAGGGGTGGTACAAGGTGGAGATCGACCAGGACCACCAGGAGGAGATCTGCGAGGTGGTGCTGGACAAGAGCAGCGACCCGGCGTGCTCCGAGACGGAGAAGACCCGCGACCGGTCCCGCGTCCCGCTCACCAGCAACAACGGCCTCAAGCAGAACGGCATCCGCTACGCCAACCCCATCGCCTTCTTCCGCAAGGAGCCCCTCGCCGACTGCGGCTCCATCCTCCAGAAGTACGACCTCAAGGACGCCCCCGAGACCCCATGATCATCATCATATATATGTTTCTCCTTAGCAGTGCATCAAACGTTCCTTCAAATTTGAGCCTCTCCGAAGCTCAAGATGGAGCCGCCGCCGCCCGTGTAGAAGTAAATTAATCTACGATTGCAGCATGCAATAACGGAGTTTACATTGCCGATCGATCTGTTTTGTACGTACCTAAGTAATTTGGAGACGCTGATGTGATTCTTTGTTCATTCATCAAGAGTCTTTGTGTGTGATTGTACCCTCCTCCTCTTGTTGCTCTGTAATTACCTACTCCACTATTACTAAGTACTTGTTGATCTGCGGGGGGCGCCTATATACATTGCTGTAACTGTGTGACACACATTAATTACTCCATCC]

[+] EMBL AK072511             [CCCCTCCACGCCATCCCCGACACCGATCGAGAGAGAGAGATCGCACCGATCGACGTACGGTACGAGACGACCATGGCGCGTCCTCGCTTCGCCACCACGGCGCCATTGTTGGCGCTCGCCGTCCTCGCCGCCGTGGTGTCCGTCGCCGTCGCCACCGCTCCCGCCGGCAAGGACCCCGGCGGCTTCGTCGTCACCGGGCGCGTCTACTGCGACCCCTGCCGCGCCGGCTTCGAGACCAACGTCTCCAAAAGCATCCCAGGGGCGACGGTGTCGGTGGAGTGCAGGCACTACGGGGCGGGGAGGGAGAGCCTGAAGGCGGAGGCGACGACGGACGAGAAGGGGTGGTACAAGGTGGAGATCGACCAGGACCACCAGGAGGAGATCTGCGAGGTGGTGCTGGACAAGAGCAGCGACCCGGCGTGCTCCGAGACGGAGAAGACCCGCGACCGGTCCCGCGTCCCGCTCACCAGCAACAACGGCCTCAAGCAGAACGGCATCCGCTACGCCAACCCCATCGCCTTCTTCCGCAAGGAGCCCCTCGCCGACTGCGGCTCCATCCTCCAGAAGTACGACCTCAAGGACGCCCCCGAGACCCCATGATCATCATCATATATATGTTTCTCCTTAGCAGTGCATCAAACGTTCCTTCAAATTTGAGCCTCTCCGAAGCTCAAGATGGAGCCGCCGCCGCCCGTGTAGAAGTAAATTAATCTACGATTGCAGCATGCAATAACGGAGTTTACATTGCCGATCGATCTGTTTTGTACGTACCTAAGTAATTTGGAGACGCTGATGTGATTCTTTGTTCATTCATCAAGAGTCTTTGTGTGTGATTGTACCCTCCTCCTCTTGTTGCTCTGTAATTACCTACTCCACTATTACTAAGTACTTGTTGATCTGCGGGGGGCGCCTATATACATTGCTGTAACTGTGTGACACACATTAATTACTCCATCC]




>consensus_3150#0
CCCCTCCACGCCATCCCCGACACCGATCGAGAGAGAGAGATCGCACCGATCGACGTACGG
TACGAGACGACCATGGCGCGTCCTCGCTTCGCCACCACGGCGCCATTGTTGGCGCTCGCC
GTCCTCGCCGCCGTGGTGTCCGTCGCCGTCGCCACCGCTCCCGCCGGCAAGGACCCCGGC
GGCTTCGTCGTCACCGGGCGCGTCTACTGCGACCCCTGCCGCGCCGGCTTCGAGACCAAC
GTCTCCAAAAGCATCCCAGGGGCGACGGTGTCGGTGGAGTGCAGGCACTACGGGGCGGGG
AGGGAGAGCCTGAAGGCGGAGGCGACGACGGACGAGAAGGGGTGGTACAAGGTGGAGATC
GACCAGGACCACCAGGAGGAGATCTGCGAGGTGGTGCTGGACAAGAGCAGCGACCCGGCG
TGCTCCGAGACGGAGAAGACCCGCGACCGGTCCCGCGTCCCGCTCACCAGCAACAACGGC
CTCAAGCAGAACGGCATCCGCTACGCCAACCCCATCGCCTTCTTCCGCAAGGAGCCCCTC
GCCGACTGCGGCTCCATCCTCCAGAAGTACGACCTCAAGGACGCCCCCGAGACCCCATGA
TCATCATCATATATATGTTTCTCCTTAGCAGTGCATCAAACGTTCCTTCAAATTTGAGCC
TCTCCGAAGCTCAAGATGGAGCCGCCGCCGCCCGTGTAGAAGTAAATTAATCTACGATTG
CAGCATGCAATAACGGAGTTTACATTGCCGATCGATCTGTTTTGTACGTACCTAAGTAAT
TTGGAGACGCTGATGTGATTCTTTGTTCATTCATCAAGAGTCTTTGTGTGTGATTGTACC
CTCCTCCTCTTGTTGCTCTGTAATTACCTACTCCACTATTACTAAGTACTTGTTGATCTG
CGGGGGGCGCCTATATACATTGCTGTAACTGTGTGACACACATTAATTACTCCATCC

consensusID : consensus_3150#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 84
fasta sequence

                              [CAGAGGACGAGACAAGGGGGGCGCCTATATACATTGCTGTAACTGTGTGACACACATTAATTACTCCATCCATTTCATAAAAAA]

[+] EMBL CA765643             [CAGAGGACGAGACAAGGGGGGCGCCTATATACATTGCTGTAACTGTGTGACACACATTAATTACTCCATCCATTTCATAAAAAA]




>consensus_3150#1
CAGAGGACGAGACAAGGGGGGCGCCTATATACATTGCTGTAACTGTGTGACACACATTAA
TTACTCCATCCATTTCATAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3150#0      CCCCTCCACGCCATCCCCGACACCGATCGAGAGAGAGAGATCGCACCGATCGACGTACGG 60
consensus_3150#1      ------------------------------------------------------------
                                                                                  

consensus_3150#0      TACGAGACGACCATGGCGCGTCCTCGCTTCGCCACCACGGCGCCATTGTTGGCGCTCGCC 120
consensus_3150#1      ------------------------------------------------------------
                                                                                  

consensus_3150#0      GTCCTCGCCGCCGTGGTGTCCGTCGCCGTCGCCACCGCTCCCGCCGGCAAGGACCCCGGC 180
consensus_3150#1      ------------------------------------------------------------
                                                                                  

consensus_3150#0      GGCTTCGTCGTCACCGGGCGCGTCTACTGCGACCCCTGCCGCGCCGGCTTCGAGACCAAC 240
consensus_3150#1      ------------------------------------------------------------
                                                                                  

consensus_3150#0      GTCTCCAAAAGCATCCCAGGGGCGACGGTGTCGGTGGAGTGCAGGCACTACGGGGCGGGG 300
consensus_3150#1      ------------------------------------------------------------
                                                                                  

consensus_3150#0      AGGGAGAGCCTGAAGGCGGAGGCGACGACGGACGAGAAGGGGTGGTACAAGGTGGAGATC 360
consensus_3150#1      ------------------------------------------------------------
                                                                                  

consensus_3150#0      GACCAGGACCACCAGGAGGAGATCTGCGAGGTGGTGCTGGACAAGAGCAGCGACCCGGCG 420
consensus_3150#1      ------------------------------------------------------------
                                                                                  

consensus_3150#0      TGCTCCGAGACGGAGAAGACCCGCGACCGGTCCCGCGTCCCGCTCACCAGCAACAACGGC 480
consensus_3150#1      ------------------------------------------------------------
                                                                                  

consensus_3150#0      CTCAAGCAGAACGGCATCCGCTACGCCAACCCCATCGCCTTCTTCCGCAAGGAGCCCCTC 540
consensus_3150#1      ------------------------------------------------------------
                                                                                  

consensus_3150#0      GCCGACTGCGGCTCCATCCTCCAGAAGTACGACCTCAAGGACGCCCCCGAGACCCCATGA 600
consensus_3150#1      ------------------------------------------------------------
                                                                                  

consensus_3150#0      TCATCATCATATATATGTTTCTCCTTAGCAGTGCATCAAACGTTCCTTCAAATTTGAGCC 660
consensus_3150#1      ------------------------------------------------------------
                                                                                  

consensus_3150#0      TCTCCGAAGCTCAAGATGGAGCCGCCGCCGCCCGTGTAGAAGTAAATTAATCTACGATTG 720
consensus_3150#1      ------------------------------------------------------------
                                                                                  

consensus_3150#0      CAGCATGCAATAACGGAGTTTACATTGCCGATCGATCTGTTTTGTACGTACCTAAGTAAT 780
consensus_3150#1      ------------------------------------------------------------
                                                                                  

consensus_3150#0      TTGGAGACGCTGATGTGATTCTTTGTTCATTCATCAAGAGTCTTTGTGTGTGATTGTACC 840
consensus_3150#1      ------------------------------------------------------------
                                                                                  

consensus_3150#0      CTCCTCCTCTTGTTGCTCTGTAATTACCTACTCCACTATTACTAAGTACTTGTTGATCTG 900
consensus_3150#1      ----------------------------------------------CAGAGGACGAGACA 14
                                                                     *   *  **    

consensus_3150#0      CGGGGGGCGCCTATATACATTGCTGTAACTGTGTGACACACATTAATTACTCCATCC--- 957
consensus_3150#1      AGGGGGGCGCCTATATACATTGCTGTAACTGTGTGACACACATTAATTACTCCATCCATT 74
                       ********************************************************   

consensus_3150#0      ----------
consensus_3150#1      TCATAAAAAA 84