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Oryza sativa
cluster # 3164 cluster # 3164       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3164#0 length = 1725 sequences # 2  

consensusID : consensus_3164#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1725
fasta sequence
                              [CTCCATTCTTCTCATCCTCTCCACTGCGGCGCGGCGGCGCGGCCTCTTAGCGCCATTTCCTCCTCCACTTGGAAGCAGCAGAAGCGGAAGCCCGTCGCCCGCCTGGCTCGAGCTCAAGGCCATGGAGTATTATGATCAGTCACTTGCTCTGACGATTCGGAGGGAGGATGAATAGCGGATCACAAAACGAGATGATTGATTCATTTTCAGAGCGGCAAGGAGCCAAGGATGCAGCAGCACTAGGGTCCTAGTCCAAATTGTCAGCTGGGGGATCAATGGCAATGGCGGAGACGGTGAGGCTGCCCGAACAGCAGCGTCGCAGGCCTCTCACCATTGCCAGCCTCCCTGAAGAAATTATGTCGGAGATTCTGCTCCTGCTGCCGCCAAAATCCATCCTCCAGTGCCGTGCCGTCTGCAAGGCCTGGCGGGACGTCACCTCCGACCGCGCCTTCCTCCTCACCCACCACCGCCGCCAGCCTCCACAGCGCCTCCTCACCTTCATCCGCGACGTGGGCAGTCACCACGATGACCTGGATATCCTGGACTACTGTGTTGAAGCCGTTGACTTCCGCACACACCAGTTCCAGTCTCTGGCCCGGTTCACTGGCCAAGATTACGACTGCTCACTCGAAGACAGCCCATTCACCGTCCACGCTTCTTGCGATGGTCTCCTGCTCATGTCCTACAACAACTATTTGCATCTCTGCAACCCCACTACACGTCAATGGCTTTGGGTCTCCCCCCCGGCGCTTCAACATGACAAGGTCGTGGGGCTCTATGCACATGGACATCCTTCCGAATACCGAGTATTGTACTATCGAGAATTTGGTTTGGGACGTACATTCTACATCACCACTGTTGGCTCCAGGAAGGAGAGGCGCATTTGGCCACATTCATCATCAGAATCCCTGAGAAAGTGGTTGACAAAAGGGACAGAGGATACTGAATTCAACAAGCCTTTCCTGTTTCATGGAAACCTGCACTGGTTGCCACAGTCAGGTCGACAAAACAAGATAGTGGTGTTCGATACACTGGATGAGGCGTTTCGGTGGTTGCATGTACCTTTCAAGATGCACAATGTGTCCTCATTACTCGAGATTGAGGGTAGCCTTGCCATGTCAAACAGCCATATTGGATCATCAAAGGTGGATCTTTGGCTTCTGCAAGATTATAAGCATATGGTATGGGTCCACAAGTATCGAATTGAATTGCCAGTGATAGAGATTCGCCGTTTAGTAGAAGATGATGTTTGGTTTCTTCATATTGTTTCCCAAGAGGGTGATGTCTTGGTTGATGGATCTTATTGGCAGTTTCACTACGACATGAAGGGTAATTTGCTGGAGAAATTTCAATGTAGTGGCCGCATGCTGAACATTACTCCACATATTCTCCAAGAAAGTCTCGTTCCACACGAAGTGTTCCAAATTCTAGATAATGAAAGTAGACATGCACCACATTTCTTCAGGGGGTTGTAGAGCATACTTTCTGTACTGTGAGGCTATTTCACACTTTTGGGCGTCTATTCATTGGATACTGCAATTTTAGCGATGGAACTTAATTTTGTAGTGAATGGTCAATGATCTGTTGTTGCAAAGGGCAGCATTCACTCTGATCAGTATTTCTGT-ACCTCCACATGTTCATCTTTAACATCGAGGGTATCATTTCAGTACTGTACGTGGGAAATTTAAATGCCTGAGACTGTTTTTTCCTGGTTTGTTGAAAAAA]

[+] EMBL AK103867             [CTCCATTCTTCTCATCCTCTCCACTGCGGCGCGGCGGCGCGGCCTCTTAGCGCCATTTCCTCCTCCACTTGGAAGCAGCAGAAGCGGAAGCCCGTCGCCCGCCTGGCTCGAGCTCAAGGCCATGGAGTATTATGATCAGTCACTTGCTCTGACGATTCGGAGGGAGGATGAATAGCGGATCACAAAACGAGATGATTGATTCATTTTCAGAGCGGCAAGGAGCCAAGGATGCAGCAGCACTAGGGTCCTAGTCCAAATTGTCAGCTGGGGGATCAATGGCAATGGCGGAGACGGTGAGGCTGCCCGAACAGCAGCGTCGCAGGCCTCTCACCATTGCCAGCCTCCCTGAAGAAATTATGTCGGAGATTCTGCTCCTGCTGCCGCCAAAATCCATCCTCCAGTGCCGTGCCGTCTGCAAGGCCTGGCGGGACGTCACCTCCGACCGCGCCTTCCTCCTCACCCACCACCGCCGCCAGCCTCCACAGCGCCTCCTCACCTTCATCCGCGACGTGGGCAGTCACCACGATGACCTGGATATCCTGGACTACTGTGTTGAAGCCGTTGACTTCCGCACACACCAGTTCCAGTCTCTGGCCCGGTTCACTGGCCAAGATTACGACTGCTCACTCGAAGACAGCCCATTCACCGTCCACGCTTCTTGCGATGGTCTCCTGCTCATGTCCTACAACAACTATTTGCATCTCTGCAACCCCACTACACGTCAATGGCTTTGGGTCTCCCCCCCGGCGCTTCAACATGACAAGGTCGTGGGGCTCTATGCACATGGACATCCTTCCGAATACCGAGTATTGTACTATCGAGAATTTGGTTTGGGACGTACATTCTACATCACCACTGTTGGCTCCAGGAAGGAGAGGCGCATTTGGCCACATTCATCATCAGAATCCCTGAGAAAGTGGTTGACAAAAGGGACAGAGGATACTGAATTCAACAAGCCTTTCCTGTTTCATGGAAACCTGCACTGGTTGCCACAGTCAGGTCGACAAAACAAGATAGTGGTGTTCGATACACTGGATGAGGCGTTTCGGTGGTTGCATGTACCTTTCAAGATGCACAATGTGTCCTCATTACTCGAGATTGAGGGTAGCCTTGCCATGTCAAACAGCCATATTGGATCATCAAAGGTGGATCTTTGGCTTCTGCAAGATTATAAGCATATGGTATGGGTCCACAAGTATCGAATTGAATTGCCAGTGATAGAGATTCGCCGTTTAGTAGAAGATGATGTTTGGTTTCTTCATATTGTTTCCCAAGAGGGTGATGTCTTGGTTGATGGATCTTATTGGCAGTTTCACTACGACATGAAGGGTAATTTGCTGGAGAAATTTCAATGTAGTGGCCGCATGCTGAACATTACTCCACATATTCTCCAAGAAAGTCTCGTTCCACACGAAGTGTTCCAAATTCTAGATAATGAAAGTAGACATGCACCACATTTCTTCAGGGGGTTGTAGAGCATACTTTCTGTACTGTGAGGCTATTTCACACTTTTGGGCGTCTATTCATTGGATACTGCAATTTTAGCGATGGAACTTAATTTTGTAGTGAATGGTCAATGATCTGTTGTTGCAAAGGGCAGCATTCACTCTGATCAGTATTTCTGT ACCTCCACATGTTCATCTTTAACATCGAGGGTATCATTTCAGTACTGTACGTGGGAAATTTAAATGCCTGAGAC                          ]
[+] EMBL BI803510             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TACTTTCTTTACCGTGAGGCTACTTCACACTTTTGGGTGTCTATTCATTGGATACTGCAATTTTAGCGATGGAACTTAATTTTGTAGTGAATGGTCAATGATCTGATGTTGCAAAGGGCAGCATTCACTCTGATCAGTATTTCTGTGACCTCCACATGTTCATCTTCAACATTGAGGGTATCATTTCTGTACTGTACAT GGAAAATTAAATGCCTGAGACTGTTTTTTCCTGGTTTGTTGAAAAAA]


>consensus_3164#0 CTCCATTCTTCTCATCCTCTCCACTGCGGCGCGGCGGCGCGGCCTCTTAGCGCCATTTCC TCCTCCACTTGGAAGCAGCAGAAGCGGAAGCCCGTCGCCCGCCTGGCTCGAGCTCAAGGC CATGGAGTATTATGATCAGTCACTTGCTCTGACGATTCGGAGGGAGGATGAATAGCGGAT CACAAAACGAGATGATTGATTCATTTTCAGAGCGGCAAGGAGCCAAGGATGCAGCAGCAC TAGGGTCCTAGTCCAAATTGTCAGCTGGGGGATCAATGGCAATGGCGGAGACGGTGAGGC TGCCCGAACAGCAGCGTCGCAGGCCTCTCACCATTGCCAGCCTCCCTGAAGAAATTATGT CGGAGATTCTGCTCCTGCTGCCGCCAAAATCCATCCTCCAGTGCCGTGCCGTCTGCAAGG CCTGGCGGGACGTCACCTCCGACCGCGCCTTCCTCCTCACCCACCACCGCCGCCAGCCTC CACAGCGCCTCCTCACCTTCATCCGCGACGTGGGCAGTCACCACGATGACCTGGATATCC TGGACTACTGTGTTGAAGCCGTTGACTTCCGCACACACCAGTTCCAGTCTCTGGCCCGGT TCACTGGCCAAGATTACGACTGCTCACTCGAAGACAGCCCATTCACCGTCCACGCTTCTT GCGATGGTCTCCTGCTCATGTCCTACAACAACTATTTGCATCTCTGCAACCCCACTACAC GTCAATGGCTTTGGGTCTCCCCCCCGGCGCTTCAACATGACAAGGTCGTGGGGCTCTATG CACATGGACATCCTTCCGAATACCGAGTATTGTACTATCGAGAATTTGGTTTGGGACGTA CATTCTACATCACCACTGTTGGCTCCAGGAAGGAGAGGCGCATTTGGCCACATTCATCAT CAGAATCCCTGAGAAAGTGGTTGACAAAAGGGACAGAGGATACTGAATTCAACAAGCCTT TCCTGTTTCATGGAAACCTGCACTGGTTGCCACAGTCAGGTCGACAAAACAAGATAGTGG TGTTCGATACACTGGATGAGGCGTTTCGGTGGTTGCATGTACCTTTCAAGATGCACAATG TGTCCTCATTACTCGAGATTGAGGGTAGCCTTGCCATGTCAAACAGCCATATTGGATCAT CAAAGGTGGATCTTTGGCTTCTGCAAGATTATAAGCATATGGTATGGGTCCACAAGTATC GAATTGAATTGCCAGTGATAGAGATTCGCCGTTTAGTAGAAGATGATGTTTGGTTTCTTC ATATTGTTTCCCAAGAGGGTGATGTCTTGGTTGATGGATCTTATTGGCAGTTTCACTACG ACATGAAGGGTAATTTGCTGGAGAAATTTCAATGTAGTGGCCGCATGCTGAACATTACTC CACATATTCTCCAAGAAAGTCTCGTTCCACACGAAGTGTTCCAAATTCTAGATAATGAAA GTAGACATGCACCACATTTCTTCAGGGGGTTGTAGAGCATACTTTCTGTACTGTGAGGCT ATTTCACACTTTTGGGCGTCTATTCATTGGATACTGCAATTTTAGCGATGGAACTTAATT TTGTAGTGAATGGTCAATGATCTGTTGTTGCAAAGGGCAGCATTCACTCTGATCAGTATT TCTGTACCTCCACATGTTCATCTTTAACATCGAGGGTATCATTTCAGTACTGTACGTGGG AAATTTAAATGCCTGAGACTGTTTTTTCCTGGTTTGTTGAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)