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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3179#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1007 fasta sequence
[CATCCAATTCCAAGCACTACTACTCATCACTAGCTCACACACAATTGCATACACCTAGCTCAAAAGCCTTTCTATTTCACTAATTGTGTGTGTTCATTGCTAGTTGCATTGTGGTTTTCTAGTTAATTAACAAGCTAGCTATACCTAGCTTATAATTAGCTAGAGTGTGAGCTTATAATTAGTTAGTTAGTTGAAAACAAGCTAAGATGAGGAGCAAGGCGTCCATGTTCTTGAAGCAGATGGTGTCGACGATCGTGGCGGTGGTGAAGGCGAAGTCGACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCTTCGGCGTCCTCCGCAACCGGAAGCTCCTCGCCACCGCCATCAACCACAAGATCCACGCCATCATGGGCGGCGCCGCCGCCCAGGACACCACCAACGACGGTGGCGTCGCCGGAGTGGAGGACGACGACGGCGGCGGCAGCAAGAAGGCCGTGGTGCTGTGCAACACCGCGCCGAGCTTCCTCACGGAGCGCGGCTACTACGATCACGCCGGCGAGGAGGAAGAGGAGGAGGAGGACAGCGACGAGTACCTGACGCACTCGTTGTTCCAGGAGGAAGACGACGAGGACGACGAGCTGGTGAACGCGCCGGGGTCGGTGATCGACCTGGTGCGCGACGCCAAGGAAGGGGAAGGCGGCGAGTTCCGGCTGGAGGACGAGATCGACCACGTCGCCGACGTGTTCATCCGCCGCATCCACAAGCAGCTCAAGCTCCAGAAGCTCGACTCCTTCAAGAGGTTCTGCGAGATGCTCGAGAGGAGCGCCTAAGTTCATACCCAGATCGCCAAACTTTTTGGCTCACTGTGCATGGTGAAGAAAAAAAAACCTTTTTTTTACCGTTAAGCCAAGGTTAATTAATTGATTAATTACACACACAACTTGGTGACTTTTGATCCATGCACGCATGTAAGTAGAGAGAATAAAGTGACAAAGATATATACTTCTCTTGTAGAAGGGGTTCAC]
[+] EMBL AK107298 [CATCCAATTCCAAGCACTACTACTCATCACTAGCTCACACACAATTGCATACACCTAGCTCAAAAGCCTTTCTATTTCACTAATTGTGTGTGTTCATTGCTAGTTGCATTGTGGTTTTCTAGTTAATTAACAAGCTAGCTATACCTAGCTTATAATTAGCTAGAGTGTGAGCTTATAATTAGTTAGTTAGTTGAAAACAAGCTAAGATGAGGAGCAAGGCGTCCATGTTCTTGAAGCAGATGGTGTCGACGATCGTGGCGGTGGTGAAGGCGAAGTCGACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCTTCGGCGTCCTCCGCAACCGGAAGCTCCTCGCCACCGCCATCAACCACAAGATCCACGCCATCATGGGCGGCGCCGCCGCCCAGGACACCACCAACGACGGTGGCGTCGCCGGAGTGGAGGACGACGACGGCGGCGGCAGCAAGAAGGCCGTGGTGCTGTGCAACACCGCGCCGAGCTTCCTCACGGAGCGCGGCTACTACGATCACGCCGGCGAGGAGGAAGAGGAGGAGGAGGACAGCGACGAGTACCTGACGCACTCGTTGTTCCAGGAGGAAGACGACGAGGACGACGAGCTGGTGAACGCGCCGGGGTCGGTGATCGACCTGGTGCGCGACGCCAAGGAAGGGGAAGGCGGCGAGTTCCGGCTGGAGGACGAGATCGACCACGTCGCCGACGTGTTCATCCGCCGCATCCACAAGCAGCTCAAGCTCCAGAAGCTCGACTCCTTCAAGAGGTTCTGCGAGATGCTCGAGAGGAGCGCCTAAGTTCATACCCAGATCGCCAAACTTTTTGGCTCACTGTGCATGGTGAAGAAAAAAAAACCTTTTTTTTACCGTTAAGCCAAGGTTAATTAATTGATTAATTACACACACAACTTGGTGACTTTTGATCCATGCACGCATGTAAGTAGAGAGAATAAAGTGACAAAGATATATACTTCTCTTGTAGAAGGGGTTCAC]
consensusID : consensus_3179#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 809 fasta sequence
[AGGCGTCCATGTTCTTGAAGCAGATGGTATCGACGATCGTGGCGGTGGTGAAGGCGAAATCGACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCACTAGCTCACACACAATTGCATACACATAGCTCAAAAGCCTTTCTATTTCACTAATTGTGTGTGTTCATTGCTAGTTGCATTGTGGTTTTCTAGTTAATTAACAAGCTAGCTATACCTAGCTTATAATTAGCTAGAGTGTGAGCTTATAATTAGTTAGTTAGTTGAAAACAAGCTAAGATGAAGAGCAAGGCGTCCATGTTCTTGAAGCAGATGGTATCGACGATCGTGGCGGTGGTGAAGGCGAAATCGACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCTTCGGCGTCCTCCGCAACCGGAAGCTCCTCGCCACCGCAATCAACCACAAGATCCACGCCATCATGGGCGGCGCCGCCGCCCAGGACACCACCAACGACGGTGGCGTCACCGGAGTGGAGGACGACGACGGCGGCGGCAGCAAGAAGGCCCGTGGTGCTGTACAACACCGCGCCGAGCTTCCTCACGGAGCGCGGCTACTACGATCACGCCGGCGAGGAGGAAGAGGAGGAGGAGGACAGCGACGAGTACCTGACGCACTCGTTGGTNCAGGAGGAAGACGACAAGGACGACGAGCTGGTGAACGCGCCCGGGGTCGGTGATCGANCTGGTGCGCGACGCCCAGGAAGGGGAANGCNGGCGAGTTCCGGCTGGAGGACGAGATCGANCACGTNGGCCGACG]
[+] EMBL CA765814 [AGGCGTCCATGTTCTTGAAGCAGATGGTATCGACGATCGTGGCGGTGGTGAAGGCGAAATCGACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCACTAGCTCACACACAATTGCATACACATAGCTCAAAAGCCTTTCTATTTCACTAATTGTGTGTGTTCATTGCTAGTTGCATTGTGGTTTTCTAGTTAATTAACAAGCTAGCTATACCTAGCTTATAATTAGCTAGAGTGTGAGCTTATAATTAGTTAGTTAGTTGAAAACAAGCTAAGATGAAGAGCAAGGCGTCCATGTTCTTGAAGCAGATGGTATCGACGATCGTGGCGGTGGTGAAGGCGAAATCGACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCTTCGGCGTCCTCCGCAACCGGAAGCTCCTCGCCACCGCAATCAACCACAAGATCCACGCCATCATGGGCGGCGCCGCCGCCCAGGACACCACCAACGACGGTGGCGTCACCGGAGTGGAGGACGACGACGGCGGCGGCAGCAAGAAGGCCCGTGGTGCTGTACAACACCGCGCCGAGCTTCCTCACGGAGCGCGGCTACTACGATCACGCCGGCGAGGAGGAAGAGGAGGAGGAGGACAGCGACGAGTACCTGACGCACTCGTTGGTNCAGGAGGAAGACGACAAGGACGACGAGCTGGTGAACGCGCCCGGGGTCGGTGATCGANCTGGTGCGCGACGCCCAGGAAGGGGAANGCNGGCGAGTTCCGGCTGGAGGACGAGATCGANCACGTNGGCCGACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3179#0 ------------------------------------------------------------
consensus_3179#1 AGGCGTCCATGTTCTTGAAGCAGATGGTATCGACGATCGTGGCGGTGGTGAAGGCGAAAT 60
consensus_3179#0 ---------------------CATCCAATTCCAAG-CACTACTACTCATCACTAGCTCAC 38
consensus_3179#1 CGACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCACTAGCTCAC 120
* * *** * * ** ****************
consensus_3179#0 ACACAATTGCATACACCTAGCTCAAAAGCCTTTCTATTTCACTAATTGTGTGTGTTCATT 98
consensus_3179#1 ACACAATTGCATACACATAGCTCAAAAGCCTTTCTATTTCACTAATTGTGTGTGTTCATT 180
**************** *******************************************
consensus_3179#0 GCTAGTTGCATTGTGGTTTTCTAGTTAATTAACAAGCTAGCTATACCTAGCTTATAATTA 158
consensus_3179#1 GCTAGTTGCATTGTGGTTTTCTAGTTAATTAACAAGCTAGCTATACCTAGCTTATAATTA 240
************************************************************
consensus_3179#0 GCTAGAGTGTGAGCTTATAATTAGTTAGTTAGTTGAAAACAAGCTAAGATGAGGAGCAAG 218
consensus_3179#1 GCTAGAGTGTGAGCTTATAATTAGTTAGTTAGTTGAAAACAAGCTAAGATGAAGAGCAAG 300
**************************************************** *******
consensus_3179#0 GCGTCCATGTTCTTGAAGCAGATGGTGTCGACGATCGTGGCGGTGGTGAAGGCGAAGTCG 278
consensus_3179#1 GCGTCCATGTTCTTGAAGCAGATGGTATCGACGATCGTGGCGGTGGTGAAGGCGAAATCG 360
************************** ***************************** ***
consensus_3179#0 ACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCTTCGGCGTCCTC 338
consensus_3179#1 ACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCTTCGGCGTCCTC 420
************************************************************
consensus_3179#0 CGCAACCGGAAGCTCCTCGCCACCGCCATCAACCACAAGATCCACGCCATCATGGGCGGC 398
consensus_3179#1 CGCAACCGGAAGCTCCTCGCCACCGCAATCAACCACAAGATCCACGCCATCATGGGCGGC 480
************************** *********************************
consensus_3179#0 GCCGCCGCCCAGGACACCACCAACGACGGTGGCGTCGCCGGAGTGGAGGACGACGACGGC 458
consensus_3179#1 GCCGCCGCCCAGGACACCACCAACGACGGTGGCGTCACCGGAGTGGAGGACGACGACGGC 540
************************************ ***********************
consensus_3179#0 GGCGGCAGCAAGAAGGCC-GTGGTGCTGTGCAACACCGCGCCGAGCTTCCTCACGGAGCG 517
consensus_3179#1 GGCGGCAGCAAGAAGGCCCGTGGTGCTGTACAACACCGCGCCGAGCTTCCTCACGGAGCG 600
****************** ********** ******************************
consensus_3179#0 CGGCTACTACGATCACGCCGGCGAGGAGGAAGAGGAGGAGGAGGACAGCGACGAGTACCT 577
consensus_3179#1 CGGCTACTACGATCACGCCGGCGAGGAGGAAGAGGAGGAGGAGGACAGCGACGAGTACCT 660
************************************************************
consensus_3179#0 GACGCACTCGTTGTTCCAGGAGGAAGACGACGAGGACGACGAGCTGGTGAACGCGCC-GG 636
consensus_3179#1 GACGCACTCGTTGGTNCAGGAGGAAGACGACAAGGACGACGAGCTGGTGAACGCGCCCGG 720
************* * *************** ************************* **
consensus_3179#0 GGTCGGTGATCGACCTGGTGCGCGACGCCAAGGAAGGGGAAGGCGG-CGAGTTCCGGCTG 695
consensus_3179#1 GGTCGGTGATCGANCTGGTGCGCGACGCCCAGGAAGGGGAANGCNGGCGAGTTCCGGCTG 780
************* *************** *********** ** * *************
consensus_3179#0 GAGGACGAGATCGACCACGTCG-CCGACGTGTTCATCCGCCGCATCCACAAGCAGCTCAA 754
consensus_3179#1 GAGGACGAGATCGANCACGTNGGCCGACG------------------------------- 809
************** ***** * ******
consensus_3179#0 GCTCCAGAAGCTCGACTCCTTCAAGAGGTTCTGCGAGATGCTCGAGAGGAGCGCCTAAGT 814
consensus_3179#1 ------------------------------------------------------------
consensus_3179#0 TCATACCCAGATCGCCAAACTTTTTGGCTCACTGTGCATGGTGAAGAAAAAAAAACCTTT 874
consensus_3179#1 ------------------------------------------------------------
consensus_3179#0 TTTTTACCGTTAAGCCAAGGTTAATTAATTGATTAATTACACACACAACTTGGTGACTTT 934
consensus_3179#1 ------------------------------------------------------------
consensus_3179#0 TGATCCATGCACGCATGTAAGTAGAGAGAATAAAGTGACAAAGATATATACTTCTCTTGT 994
consensus_3179#1 ------------------------------------------------------------
consensus_3179#0 AGAAGGGGTTCAC 1007
consensus_3179#1 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||