cluster # 3183

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Oryza sativa
cluster # 3183 cluster # 3183 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3183#0 length = 235 sequences # 1

consensus_3183#1 length = 211 sequences # 1

consensusID : consensus_3183#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 235
fasta sequence

                              [TGGACTGAACGAGTAGAAACGACCGGAAGCCACCAAAGAGTAGTAGTTGGAATCTGCACTAGTCACTGTATGCATCCTATTGCTGTGTATGTTGTACAGTGGGCACTAAATCTGAATGTCGTCACTGTCTGCATCCCTATTGCTTTGTTAAGTACTGTAGTAGGAGACTCGATCTGTATTAGCACTATCTAGAAATCTTCGCTTTTGTTTCTTCATAAAAAAAAAAAAAAAAAGC]

[+] EMBL CF291138             [TGGACTGAACGAGTAGAAACGACCGGAAGCCACCAAAGAGTAGTAGTTGGAATCTGCACTAGTCACTGTATGCATCCTATTGCTGTGTATGTTGTACAGTGGGCACTAAATCTGAATGTCGTCACTGTCTGCATCCCTATTGCTTTGTTAAGTACTGTAGTAGGAGACTCGATCTGTATTAGCACTATCTAGAAATCTTCGCTTTTGTTTCTTCATAAAAAAAAAAAAAAAAAGC]




>consensus_3183#0
TGGACTGAACGAGTAGAAACGACCGGAAGCCACCAAAGAGTAGTAGTTGGAATCTGCACT
AGTCACTGTATGCATCCTATTGCTGTGTATGTTGTACAGTGGGCACTAAATCTGAATGTC
GTCACTGTCTGCATCCCTATTGCTTTGTTAAGTACTGTAGTAGGAGACTCGATCTGTATT
AGCACTATCTAGAAATCTTCGCTTTTGTTTCTTCATAAAAAAAAAAAAAAAAAGC

consensusID : consensus_3183#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 211
fasta sequence

                              [TCTGTATTAGCACTATCTAGAAATCTTCGCTTTTGTTTCTTCATTAACCTGCTATGCATGATCCAAGTGGTATCTATGTACTATATCTATCATGAATGAATAAACAGGTAGCCTTTTCACTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGTCATGCCGTTACGTACCGTAT]

[+] EMBL CF319661             [TCTGTATTAGCACTATCTAGAAATCTTCGCTTTTGTTTCTTCATTAACCTGCTATGCATGATCCAAGTGGTATCTATGTACTATATCTATCATGAATGAATAAACAGGTAGCCTTTTCACTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGTCATGCCGTTACGTACCGTAT]




>consensus_3183#1
TCTGTATTAGCACTATCTAGAAATCTTCGCTTTTGTTTCTTCATTAACCTGCTATGCATG
ATCCAAGTGGTATCTATGTACTATATCTATCATGAATGAATAAACAGGTAGCCTTTTCAC
TTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAACCACTGTCATGCCGTTACGTACCGTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3183#0      TGGACTGAACGAGTAGAAACGACCGGAAGCCACCAAAGAGTAGTAG--TTGGAATCTGCA 58
consensus_3183#1      -----------------TCTGTATTAGCACTATCTAGAAATCTTCGCTTTTGTTTCTTCA 43
                                          *        * * * *  * *  * *  ** *  *** **

consensus_3183#0      CTAGTC-ACTGTATGC-ATCCTATTGCTGTGTATGTTGTACAGTGGGCACTAAATCTGAA 116
consensus_3183#1      TTAACCTGCTATGCATGATCCAAGTGGTATCTATGTACTATATCTATCA-TGAATGAATA 102
                       **  *  ** *     **** * ** * * *****  ** *     ** * ***    *

consensus_3183#0      TGTCGTCACTGTCTGCATCCCTATTGCTTTGTTAAGTACTGTAGTAGGAGACTCGATCTG 176
consensus_3183#1      AACAGGTAGCCTTTTCACTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 162
                          *  *   * * **     *          **  *    *  *  * *    *    

consensus_3183#0      TATTAGCACTATCTAGAAATCTTCGCTTTTGTTTCTTCATAAAAAAAAAAAAAAAAAGC 235
consensus_3183#1      AAAAAAAAAAAAAAAAAAAAAACCACTGTCATGCCGTTACGTACCGTAT---------- 211
                       *  *  *  *   * ***    * ** *  *  * * *   *    *