cluster # 3184

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Oryza sativa
cluster # 3184 cluster # 3184 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3184#0 length = 1031 sequences # 1

consensus_3184#1 length = 933 sequences # 1

consensusID : consensus_3184#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1031
fasta sequence

                              [GCTCGCGCGCCAAGCAAAGAGCCAAAGAGAGATCGAAAAGCCACCGCCGAGCAACAAACACAGCTCGCTCGTTCCGCCATTGGCCGCCGCTCAATCGATCGTTCGATCAGCCTCATTCTCGCCGTCAACCATGTGCAAGGTCATCACGATCCAGTCGCTCGTCTGGCTGCGCCGCACGGTGCGGCGGTGGCGCTCCCGCGCCGCGGCGCGCCCGGCCGGCAGCAAGATGGAGCGGGACGGCGACGCGGTTCCGGCGGGTCACGTGGCCGTGCGGGTGGGAGGCGGCGGGGAGGACGCGAGGCGGTTCGTGGTGCGGGTGGCGCACTTGAACCACCCGGCGTTCCGGGAGCTGCTCCGCCAGGCGGAGGAGGAGTACGGCTTCCCGTCCGGCGCCTCCGGCCCCGTCGCGCTCCCCTGCGACGAGGACCACTTCCGCGACGTCCTCCGCCGCGTGTCCTCCGACGAGCGCCACGACCTGGCCTTCTGCCGGCCCGCCGCCACCTGCGGCGTCACGAAGCGCCGCGCCGAGTCGTCTTCGTCGTCGTCGTCGCGGGCGCCGCTGCTTCAAGGGATGGACAGCCTCGTCTGGTGATCCGCGCCAATCCGAAAGCCTCGTACCTAAGCCACCGATAAGCAAAAGCAGCTGCAAACCGTGCACGCGCGTCCATGTCGTCGATCGGCGGCATTGCAGCTGGTCGTTCGGGCGCGCGTGGCGACCGCGGGACAAGAAGGCCGTGCACGACACGTACGCACGCGGGCACATGCAAGAACGCGCGCTGGGGCATGCATGCGACGTCTAAAGGGCGCCCTCCCGTGCTCGGCGTAATGGCGGCGCGCGCAACTGGGGCAGGCGGCCGGCACACAGTACTGTAGCTAGCTAAGCTAGCTAGCATAGCAAGTAGGCTATAGCTATCTGCCATGGGCTGACAGCTACTACAAGATATACTAATCTGATTGAGAGGGTGGTGATGATTTTAGGTATTCTTCTCCCTGTAATTCTACTCGGAAATTAATAAAGAATCGATATATGG]

[+] EMBL AK108652             [GCTCGCGCGCCAAGCAAAGAGCCAAAGAGAGATCGAAAAGCCACCGCCGAGCAACAAACACAGCTCGCTCGTTCCGCCATTGGCCGCCGCTCAATCGATCGTTCGATCAGCCTCATTCTCGCCGTCAACCATGTGCAAGGTCATCACGATCCAGTCGCTCGTCTGGCTGCGCCGCACGGTGCGGCGGTGGCGCTCCCGCGCCGCGGCGCGCCCGGCCGGCAGCAAGATGGAGCGGGACGGCGACGCGGTTCCGGCGGGTCACGTGGCCGTGCGGGTGGGAGGCGGCGGGGAGGACGCGAGGCGGTTCGTGGTGCGGGTGGCGCACTTGAACCACCCGGCGTTCCGGGAGCTGCTCCGCCAGGCGGAGGAGGAGTACGGCTTCCCGTCCGGCGCCTCCGGCCCCGTCGCGCTCCCCTGCGACGAGGACCACTTCCGCGACGTCCTCCGCCGCGTGTCCTCCGACGAGCGCCACGACCTGGCCTTCTGCCGGCCCGCCGCCACCTGCGGCGTCACGAAGCGCCGCGCCGAGTCGTCTTCGTCGTCGTCGTCGCGGGCGCCGCTGCTTCAAGGGATGGACAGCCTCGTCTGGTGATCCGCGCCAATCCGAAAGCCTCGTACCTAAGCCACCGATAAGCAAAAGCAGCTGCAAACCGTGCACGCGCGTCCATGTCGTCGATCGGCGGCATTGCAGCTGGTCGTTCGGGCGCGCGTGGCGACCGCGGGACAAGAAGGCCGTGCACGACACGTACGCACGCGGGCACATGCAAGAACGCGCGCTGGGGCATGCATGCGACGTCTAAAGGGCGCCCTCCCGTGCTCGGCGTAATGGCGGCGCGCGCAACTGGGGCAGGCGGCCGGCACACAGTACTGTAGCTAGCTAAGCTAGCTAGCATAGCAAGTAGGCTATAGCTATCTGCCATGGGCTGACAGCTACTACAAGATATACTAATCTGATTGAGAGGGTGGTGATGATTTTAGGTATTCTTCTCCCTGTAATTCTACTCGGAAATTAATAAAGAATCGATATATGG]




>consensus_3184#0
GCTCGCGCGCCAAGCAAAGAGCCAAAGAGAGATCGAAAAGCCACCGCCGAGCAACAAACA
CAGCTCGCTCGTTCCGCCATTGGCCGCCGCTCAATCGATCGTTCGATCAGCCTCATTCTC
GCCGTCAACCATGTGCAAGGTCATCACGATCCAGTCGCTCGTCTGGCTGCGCCGCACGGT
GCGGCGGTGGCGCTCCCGCGCCGCGGCGCGCCCGGCCGGCAGCAAGATGGAGCGGGACGG
CGACGCGGTTCCGGCGGGTCACGTGGCCGTGCGGGTGGGAGGCGGCGGGGAGGACGCGAG
GCGGTTCGTGGTGCGGGTGGCGCACTTGAACCACCCGGCGTTCCGGGAGCTGCTCCGCCA
GGCGGAGGAGGAGTACGGCTTCCCGTCCGGCGCCTCCGGCCCCGTCGCGCTCCCCTGCGA
CGAGGACCACTTCCGCGACGTCCTCCGCCGCGTGTCCTCCGACGAGCGCCACGACCTGGC
CTTCTGCCGGCCCGCCGCCACCTGCGGCGTCACGAAGCGCCGCGCCGAGTCGTCTTCGTC
GTCGTCGTCGCGGGCGCCGCTGCTTCAAGGGATGGACAGCCTCGTCTGGTGATCCGCGCC
AATCCGAAAGCCTCGTACCTAAGCCACCGATAAGCAAAAGCAGCTGCAAACCGTGCACGC
GCGTCCATGTCGTCGATCGGCGGCATTGCAGCTGGTCGTTCGGGCGCGCGTGGCGACCGC
GGGACAAGAAGGCCGTGCACGACACGTACGCACGCGGGCACATGCAAGAACGCGCGCTGG
GGCATGCATGCGACGTCTAAAGGGCGCCCTCCCGTGCTCGGCGTAATGGCGGCGCGCGCA
ACTGGGGCAGGCGGCCGGCACACAGTACTGTAGCTAGCTAAGCTAGCTAGCATAGCAAGT
AGGCTATAGCTATCTGCCATGGGCTGACAGCTACTACAAGATATACTAATCTGATTGAGA
GGGTGGTGATGATTTTAGGTATTCTTCTCCCTGTAATTCTACTCGGAAATTAATAAAGAA
TCGATATATGG

consensusID : consensus_3184#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 933
fasta sequence

                              [AACAGCAGCTAGCCGAGCCGAGCCAACCAACGGACGAACACCTCTCTGGCTCTCTCCCCCACCGCGTCGTCGTCGTCGTCGTCGCCGATGGCCAAATGCAGCAAGATCCGCTACATCGTCTGGCTCCGGCAGACGCTGCGGCGGTGGCGGTCCCGGGCCGCGGCGCGCGCGGCGGCGGAGGCGGTGCCGGCGGGGCACGTGGCGGTGTGCGTGGGCGGGGCGTCGCGGCGGTTCGTGGTGCGGGCGGCGCACCTGAACCACCCGGTGTTCAGGGAGCTGCTCCGGCAGGCGGAGGAGGAGTACGGCTTCCCGTCGGGCGCCTACTGTGGCCCCATCGCGCTCCCCTGCGACGAGGGCCTCTTCGAGCACGTCCTCCGGCACCTCTCCTCGCCGTCCTCCGCCGCGCGGTTCGTCACCCTCGAGGACATCCAGAGCGGCGCCCTCTCCTGCTGCTGCGCCGCCGCCGGCGACGCCCTCCCGCTCCTCCGCGGCATTGCCACCGACAAGGCCGTGTGGTGAATGCGATGTGTGATCCCACCCCTAGCTAGCCGCTCCGCTCGCCATTGCGCGTGCGTGCATGCGCGCGACCGTTCTTGCCACCATTTTTTTTTTCTCTTCTCTTCTTGTCCTCTTTTTTCCCCTCTCCCTCCATGGCCATTTGAGAGGAGCTGAGACTCGCCGGAGCAAGAGAAAGAGAGAGAAATCGGCGACCGGCCGGCGGTGGCGGTGAAGTGAGATGGCTGAGAAAGTCTTAGGATTTTGAGACGGCCAAGTCTAGTCATCCATTCCCTTGTCAAATCCGGGAAAATTATTTAGCACCGGAGATTTTTATTCTTTCTTCTTCTTCTTCTTATTTTCACTTAATAATTCGCCAGTGTAAATAACTGTACTACTGCGATTATTCTGCCACCATTTCAAGTGAATTGAAACATT]

[+] EMBL AK107934             [AACAGCAGCTAGCCGAGCCGAGCCAACCAACGGACGAACACCTCTCTGGCTCTCTCCCCCACCGCGTCGTCGTCGTCGTCGTCGCCGATGGCCAAATGCAGCAAGATCCGCTACATCGTCTGGCTCCGGCAGACGCTGCGGCGGTGGCGGTCCCGGGCCGCGGCGCGCGCGGCGGCGGAGGCGGTGCCGGCGGGGCACGTGGCGGTGTGCGTGGGCGGGGCGTCGCGGCGGTTCGTGGTGCGGGCGGCGCACCTGAACCACCCGGTGTTCAGGGAGCTGCTCCGGCAGGCGGAGGAGGAGTACGGCTTCCCGTCGGGCGCCTACTGTGGCCCCATCGCGCTCCCCTGCGACGAGGGCCTCTTCGAGCACGTCCTCCGGCACCTCTCCTCGCCGTCCTCCGCCGCGCGGTTCGTCACCCTCGAGGACATCCAGAGCGGCGCCCTCTCCTGCTGCTGCGCCGCCGCCGGCGACGCCCTCCCGCTCCTCCGCGGCATTGCCACCGACAAGGCCGTGTGGTGAATGCGATGTGTGATCCCACCCCTAGCTAGCCGCTCCGCTCGCCATTGCGCGTGCGTGCATGCGCGCGACCGTTCTTGCCACCATTTTTTTTTTCTCTTCTCTTCTTGTCCTCTTTTTTCCCCTCTCCCTCCATGGCCATTTGAGAGGAGCTGAGACTCGCCGGAGCAAGAGAAAGAGAGAGAAATCGGCGACCGGCCGGCGGTGGCGGTGAAGTGAGATGGCTGAGAAAGTCTTAGGATTTTGAGACGGCCAAGTCTAGTCATCCATTCCCTTGTCAAATCCGGGAAAATTATTTAGCACCGGAGATTTTTATTCTTTCTTCTTCTTCTTCTTATTTTCACTTAATAATTCGCCAGTGTAAATAACTGTACTACTGCGATTATTCTGCCACCATTTCAAGTGAATTGAAACATT]




>consensus_3184#1
AACAGCAGCTAGCCGAGCCGAGCCAACCAACGGACGAACACCTCTCTGGCTCTCTCCCCC
ACCGCGTCGTCGTCGTCGTCGTCGCCGATGGCCAAATGCAGCAAGATCCGCTACATCGTC
TGGCTCCGGCAGACGCTGCGGCGGTGGCGGTCCCGGGCCGCGGCGCGCGCGGCGGCGGAG
GCGGTGCCGGCGGGGCACGTGGCGGTGTGCGTGGGCGGGGCGTCGCGGCGGTTCGTGGTG
CGGGCGGCGCACCTGAACCACCCGGTGTTCAGGGAGCTGCTCCGGCAGGCGGAGGAGGAG
TACGGCTTCCCGTCGGGCGCCTACTGTGGCCCCATCGCGCTCCCCTGCGACGAGGGCCTC
TTCGAGCACGTCCTCCGGCACCTCTCCTCGCCGTCCTCCGCCGCGCGGTTCGTCACCCTC
GAGGACATCCAGAGCGGCGCCCTCTCCTGCTGCTGCGCCGCCGCCGGCGACGCCCTCCCG
CTCCTCCGCGGCATTGCCACCGACAAGGCCGTGTGGTGAATGCGATGTGTGATCCCACCC
CTAGCTAGCCGCTCCGCTCGCCATTGCGCGTGCGTGCATGCGCGCGACCGTTCTTGCCAC
CATTTTTTTTTTCTCTTCTCTTCTTGTCCTCTTTTTTCCCCTCTCCCTCCATGGCCATTT
GAGAGGAGCTGAGACTCGCCGGAGCAAGAGAAAGAGAGAGAAATCGGCGACCGGCCGGCG
GTGGCGGTGAAGTGAGATGGCTGAGAAAGTCTTAGGATTTTGAGACGGCCAAGTCTAGTC
ATCCATTCCCTTGTCAAATCCGGGAAAATTATTTAGCACCGGAGATTTTTATTCTTTCTT
CTTCTTCTTCTTATTTTCACTTAATAATTCGCCAGTGTAAATAACTGTACTACTGCGATT
ATTCTGCCACCATTTCAAGTGAATTGAAACATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3184#0      GCTCGCGCGCCAAGCAAAGAGCCAAAGAGAGATCGAAAAGCCACCGCCGAGCAACAAACA 60
consensus_3184#1      -----------------------AACAGCAGCTAGCCGAGCCGA-GCCAACCAACGGACG 36
                                             **    ** * *   ****   *** * ****  ** 

consensus_3184#0      CAGCTCGCTCGTTCCGCCATTGGCCGCCGCTCAATCGATCGTTCGATCAGCCTCATTCTC 120
consensus_3184#1      AACACCTCTC----------TGGCTCTCTCCC---CCACCGCGTCGTCGTCGTCGTCGTC 83
                       *   * ***          ****   * * *   * * **     **  * ** *  **

consensus_3184#0      GCCGTCAACCATGTGCAAGGTCATCACGATCCAGTCGCTCGTCTGGCTGCGCCGCACGGT 180
consensus_3184#1      GCCGATGGCCAAATGCAG------CAAGATCCGCTACATCGTCTGGCTCCGGCAGACGCT 137
                      ****    ***  ****       ** *****  *   ********** ** *  *** *

consensus_3184#0      GCGGCGGTGGCGCTCCCGCGCCGCGGCGCGCCCGGCCGGCAGCAAGATGGAGCGGGACGG 240
consensus_3184#1      GCGGCGGTGGCGGTCCCGGGCCGCGGCGCGCGCGGC---------GGCGGAG-------- 180
                      ************ ***** ************ ****         *  ****        

consensus_3184#0      CGACGCGGTTCCGGCGGGTCACGTGGCCGTGCGGGTGGGAGGCGGCGGGGAGGACGCGAG 300
consensus_3184#1      ----GCGGTGCCGGCGGGGCACGTGGCGGTGTGCGTGGG------CGGGGCGT---CGCG 227
                          ***** ******** ******** *** * *****      ***** *    ** *

consensus_3184#0      GCGGTTCGTGGTGCGGGTGGCGCACTTGAACCACCCGGCGTTCCGGGAGCTGCTCCGCCA 360
consensus_3184#1      GCGGTTCGTGGTGCGGGCGGCGCACCTGAACCACCCGGTGTTCAGGGAGCTGCTCCGGCA 287
                      ***************** ******* ************ **** ************* **

consensus_3184#0      GGCGGAGGAGGAGTACGGCTTCCCGTCCGGCGCCTCC---GGCCCCGTCGCGCTCCCCTG 417
consensus_3184#1      GGCGGAGGAGGAGTACGGCTTCCCGTCGGGCGCCTACTGTGGCCCCATCGCGCTCCCCTG 347
                      *************************** ******* *   ****** *************

consensus_3184#0      CGACGAGGACCACTTCCGCGACGTCCTCCGCCGCGTGTCCTCCGACGAGCGCCACGACCT 477
consensus_3184#1      CGACGAGGGCCTCTTCGAGCACGTCCTCCGGCACCTCTCCTC-GCCGTCCTCCGCCGCGC 406
                      ******** ** ****    ********** * * * ***** * **  * ** *  *  

consensus_3184#0      GGCCTTCTGCCGGCCCGCCGCCACCTGCGGCGTCACGAAGCGCCGC-GCCGAGTCGTCTT 536
consensus_3184#1      GGTTCGTCACC--CTCGAGGACATCCAGAGCGGCGCCCTCTCCTGCTGCTGCGCCGCCGC 464
                      **       **  * **  * ** *    *** * *      * ** ** * * ** *  

consensus_3184#0      CGTCGTCGTCGTCGCGGGCGCCGCTGCTTCAAGGG-ATGGACAGCCTCGTCTGGTGATCC 595
consensus_3184#1      CGGCGACGCCCTCCC--GCTCCTCCGCGGCATTGCCACCGACAAGGCCGTGTGGTGAAT- 521
                      ** ** ** * ** *  ** ** * **  **  *  *  ****    *** ******   

consensus_3184#0      GCGCCAATCCGAAAGCCTCGTACCTAAGCCACCGATAAGCAAAAGCAGCTGCAAACCGTG 655
consensus_3184#1      GCGATGTGTGATCCCACCCCTAGCTAGCCGCTCCGCTCGCCATTGCGCGTGCG---TGCA 578
                      ***             * * ** ***  *   *     ** *  **   ***     *  

consensus_3184#0      CACGCGCGTCCATGTCGTCGATCGGCGGCATTGCAGCTGGTCGTTCGGGCGCGCGTGGCG 715
consensus_3184#1      TGCGCGCGACCGTTCTTGCCACCATTTTTTTTTTCTCTTCTC-TTCTTGTCCTCTTTTTT 637
                        ****** ** *     * * *       **    **  ** ***  *  * * *    

consensus_3184#0      ACCGCGGGACAAGAAGGCCGTGCACGACACGT--ACGCACGCGGGCACATGCAAGAACGC 773
consensus_3184#1      CCCCTCTCCCTCCATGGCCATTTGAGAGGAGCTGAGACTCGCCGGAGCAAGAGAAAGAGA 697
                       **      *   * **** *    **   *   *  * *** **  ** *  * *  * 

consensus_3184#0      GCG----CTGGGGCATGCATGCGACGTCTAAAGGGCGCCCTCCCGTGCTCGGCGTAATGG 829
consensus_3184#1      GAGAAATCGGCGACCGGCCGGCGGTGGCGGTGAAGTGAGATGGCTGAGAAAGTCTTAGGA 757
                      * *    * * * *  **  ***  * *      * *   *  *       *  * * * 

consensus_3184#0      CGGCGCGCGCAACTGGGGCAGGCGGCCGGCACACAGTACTGTAGCTAGCTAAGCTAGCTA 889
consensus_3184#1      TTTTGAG-ACGGCCAAGTCTAGTCATCCATTCCCT-TGTCAAATCCGGGAAAATTATTTA 815
                          * *  *  *   * *  *    *    * *  *     * *  *  **  **  **

consensus_3184#0      GCATAGCAAGTAGGCTATAGCTATCTGCCATGGGCTGACAGCTACTACAAGATATACTAA 949
consensus_3184#1      GCACCGGAGATTTTTATTCTTTCTTCTTCTTCTTCTTATTTTCACTTAATAATTCGCCAG 875
                      ***  * *  *      *   * *    * *   ** *     ***  *  **   * * 

consensus_3184#0      TCTGATTGAGAGGGTGGTGATGATTTTAGGTATTCTTCTCCCTGTAATTCTACTCGGAAA 1009
consensus_3184#1      TGTAAATAACTGTACTACTGCGATT----ATTCTGCCACCATTTCAAGTGAATTGAAACA 931
                      * * * * *  *         ****     *  *     *  *  ** *  * *   * *

consensus_3184#0      TTAATAAAGAATCGATATATGG 1031
consensus_3184#1      TT-------------------- 933
                      **