cluster # 3197

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Oryza sativa
cluster # 3197 cluster # 3197 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3197#0 length = 414 sequences # 1

consensus_3197#1 length = 398 sequences # 1

consensusID : consensus_3197#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 414
fasta sequence

                              [AAAAAACGCGCAATCCCGGCGGCCATGACGCCGCTCGCCCGCCGCCTGCTGCACGCGAGCTCACCCGCCGCCGCCGGAGGCGAGCCGGGGGTGCTGGCCTGCCGCCTCGCCTCCCGCGCGGTGGTCCGCTTCGCGGGGCCAGAGGCGGGCCGCTTCCTCCGCTCGCTCCTCACCAACGACCTCCTCCTCTCGTCGTCGTCGCAGCAGAGGTACGCGCCCACGCCCAACGCGCCCGCGCGGGCGCCGCCGCCGGCGTACGCGGCGCTGCTGACGCCGCAGGGGAGGTTCCTCTACGACCTCTTCCTCTACCGCCCGCCCCCACCGTCGCAGCTGCTCGACCGCACGGGCTCCGCGCCGCTGACCGGGGAGAGGCCCAAGGGGAACCAGGAGGATGAGGGGGAGGACGAGCCCGGC]

[+] EMBL AU166339             [AAAAAACGCGCAATCCCGGCGGCCATGACGCCGCTCGCCCGCCGCCTGCTGCACGCGAGCTCACCCGCCGCCGCCGGAGGCGAGCCGGGGGTGCTGGCCTGCCGCCTCGCCTCCCGCGCGGTGGTCCGCTTCGCGGGGCCAGAGGCGGGCCGCTTCCTCCGCTCGCTCCTCACCAACGACCTCCTCCTCTCGTCGTCGTCGCAGCAGAGGTACGCGCCCACGCCCAACGCGCCCGCGCGGGCGCCGCCGCCGGCGTACGCGGCGCTGCTGACGCCGCAGGGGAGGTTCCTCTACGACCTCTTCCTCTACCGCCCGCCCCCACCGTCGCAGCTGCTCGACCGCACGGGCTCCGCGCCGCTGACCGGGGAGAGGCCCAAGGGGAACCAGGAGGATGAGGGGGAGGACGAGCCCGGC]




>consensus_3197#0
AAAAAACGCGCAATCCCGGCGGCCATGACGCCGCTCGCCCGCCGCCTGCTGCACGCGAGC
TCACCCGCCGCCGCCGGAGGCGAGCCGGGGGTGCTGGCCTGCCGCCTCGCCTCCCGCGCG
GTGGTCCGCTTCGCGGGGCCAGAGGCGGGCCGCTTCCTCCGCTCGCTCCTCACCAACGAC
CTCCTCCTCTCGTCGTCGTCGCAGCAGAGGTACGCGCCCACGCCCAACGCGCCCGCGCGG
GCGCCGCCGCCGGCGTACGCGGCGCTGCTGACGCCGCAGGGGAGGTTCCTCTACGACCTC
TTCCTCTACCGCCCGCCCCCACCGTCGCAGCTGCTCGACCGCACGGGCTCCGCGCCGCTG
ACCGGGGAGAGGCCCAAGGGGAACCAGGAGGATGAGGGGGAGGACGAGCCCGGC

consensusID : consensus_3197#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 398
fasta sequence

                              [GCAAAAAACGCGCAATCCCGGCGGCCATGACGCGCTCGCCCGCCGCCTGCTGCACGCGAGCTCACCCGCCGCCGCCGGAGAGNCCTGGGGGTGCTGGCCTGCCGCCTCGCCTCCCGCGCGGTGGTCCGCTTCGGTGTGCCAGAGGCGGGCCGCTTCCTCCGNTCGCTCCTCACCAACGACCTCCTCCTCTCGTCGTCGTCGCAGCAGAGGTACGCGNCCACGGCCAACGCGCCCGCGCGGGCGCTGNCGCCGGGTAACGCGGCGCTGCTGACGNCGCAGGGAGGTTCCTCTACGACCTCTTCCTCTACCGGCCGCCCCAACGTCGNAGTTGCTCGACCGAATGGCTNCGGGCCGTTGACCGNGGAGAGGCCCAAGGGGAAACAGGAGGGATTAGGGGG]

[+] EMBL C28438               [GCAAAAAACGCGCAATCCCGGCGGCCATGACGCGCTCGCCCGCCGCCTGCTGCACGCGAGCTCACCCGCCGCCGCCGGAGAGNCCTGGGGGTGCTGGCCTGCCGCCTCGCCTCCCGCGCGGTGGTCCGCTTCGGTGTGCCAGAGGCGGGCCGCTTCCTCCGNTCGCTCCTCACCAACGACCTCCTCCTCTCGTCGTCGTCGCAGCAGAGGTACGCGNCCACGGCCAACGCGCCCGCGCGGGCGCTGNCGCCGGGTAACGCGGCGCTGCTGACGNCGCAGGGAGGTTCCTCTACGACCTCTTCCTCTACCGGCCGCCCCAACGTCGNAGTTGCTCGACCGAATGGCTNCGGGCCGTTGACCGNGGAGAGGCCCAAGGGGAAACAGGAGGGATTAGGGGG]




>consensus_3197#1
GCAAAAAACGCGCAATCCCGGCGGCCATGACGCGCTCGCCCGCCGCCTGCTGCACGCGAG
CTCACCCGCCGCCGCCGGAGAGNCCTGGGGGTGCTGGCCTGCCGCCTCGCCTCCCGCGCG
GTGGTCCGCTTCGGTGTGCCAGAGGCGGGCCGCTTCCTCCGNTCGCTCCTCACCAACGAC
CTCCTCCTCTCGTCGTCGTCGCAGCAGAGGTACGCGNCCACGGCCAACGCGCCCGCGCGG
GCGCTGNCGCCGGGTAACGCGGCGCTGCTGACGNCGCAGGGAGGTTCCTCTACGACCTCT
TCCTCTACCGGCCGCCCCAACGTCGNAGTTGCTCGACCGAATGGCTNCGGGCCGTTGACC
GNGGAGAGGCCCAAGGGGAAACAGGAGGGATTAGGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3197#0      --AAAAAACGCGCAATCCCGGCGGCCATGACGCCGCTCGCCCGCCGCCTGCTGCACGCGA 58
consensus_3197#1      GCAAAAAACGCGCAATCCCGGCGGCCATGACGC-GCTCGCCCGCCGCCTGCTGCACGCGA 59
                        ******************************* **************************

consensus_3197#0      GCTCACCCGCCGCCGCCGGAGGCGAGCCGGGGGTGCTGGCCTGCCGCCTCGCCTCCCGCG 118
consensus_3197#1      GCTCACCCGCCGCCGCCGGAGA-GNCCTGGGGGTGCTGGCCTGCCGCCTCGCCTCCCGCG 118
                      *********************  *  * ********************************

consensus_3197#0      CGGTGGTCCGCTTCGCGGGGCCAGAGGCGGGCCGCTTCCTCCGCTCGCTCCTCACCAACG 178
consensus_3197#1      CGGTGGTCCGCTTCGGTGTGCCAGAGGCGGGCCGCTTCCTCCGNTCGCTCCTCACCAACG 178
                      ***************  * ************************ ****************

consensus_3197#0      ACCTCCTCCTCTCGTCGTCGTCGCAGCAGAGGTACGCGCCCACGCCCAACGCGCCCGCGC 238
consensus_3197#1      ACCTCCTCCTCTCGTCGTCGTCGCAGCAGAGGTACGCGNCCACGGCCAACGCGCCCGCGC 238
                      ************************************** ***** ***************

consensus_3197#0      GGGCGCCGCCGCCGGCGTACGCGGCGCTGCTGACGCCGCAGGGGAGGTTCCTCTACGACC 298
consensus_3197#1      GGGCGCTGNCGCCGGGTAACGCGGCGCTGCTGACGNCGCAGGG-AGGTTCCTCTACGACC 297
                      ****** * ******   ***************** ******* ****************

consensus_3197#0      TCTTCCTCTACCGCCCGCCCCCACCGTCGCAGCTGCTCGACCGCACGGGCTCCGCGCCGC 358
consensus_3197#1      TCTTCCTCTACCGGCCGCCCCAAC-GTCGNAGTTGCTCGACCGAATGG-CTNCGGGCCGT 355
                      ************* ******* ** **** ** ********** * ** ** ** **** 

consensus_3197#0      TGACCGGGGAGAGGCCCAAGGGGAACCAGGAGG-ATGAGGGGGAGGACGAGCCCGGC 414
consensus_3197#1      TGACCGNGGAGAGGCCCAAGGGGAAACAGGAGGGATTAGGGGG-------------- 398
                      ****** ****************** ******* ** ******