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Oryza sativa
cluster # 3208 cluster # 3208       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3208#0 length = 1999 sequences # 2  

consensusID : consensus_3208#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1999
fasta sequence
                              [CGAGACAAGGGGGAAGGCACCAAGGACCTAGCAGAAGGTGCCATTGTAAAAGCATAGAAGCCAAGAGAGATGACGAGTAGCATGAAGTTGCCCGCTACCTTCCTCTCCTTCAGTTCACATCAGCCCAGAGGAAGCTCCCATTGTTCTGTGGCCTCTGCTGCATATGCTGTTGAACCAAGACTTGGCGAAGGAGCAGTGGTGTCTAAGAAGACGCCAAGCCGTTCTCCCTGCAGGACGATGGCCAAGGTTGATGACAAGAATGATCTCTGCAGAATGAATCAAGCAAAGTTCGAGCCTTCCATCTGGGGAGATTTCTTCCTCTCTTACTGCAACCCGTTGGCTTACTCTGACAATCAGAGATCGATGGAAGAACGGGCAGAGTATCTGAAGAAAGAGGTGGCAAAACTCATAGTAAATTCAAGAACCGATAGCCTTCCGGAGAAGCTGCATCTTATAGATGTACTGGAGCGTCTCTGTGTGGACCATCTGTTCGAAGAGGAGATTAACGCTGTGATGGATGAAATTAGCGACGCCGATGTCAGTGACTGTGAACTGCATACTGTAGCTCTGTGGTTTTATCTTCTCCGTAAACATCGACACAGAGTTTCTCCAGATGTGTTTCTGAAGTTTAGAGATGAAGATGGAATTTTTGAGGCAGAAGACGCAAGGGACCTGCTAAGTCTTTACAATGCCGCTCATCTCACGACACATGGAGAGGGAATACTTTGATGAAGCTATTTCCTTCACTAAAAGGCAACTAAGATCATTGATGCCCAAAGNTGTTGAANGGGCACTAGCTCATGACATAAATTCTGCGCTTGAAATCCCTCTTCCTANAAGGGTTCGAATATATGAGGNCCAGTATTTTATGTCTACATATGAGAAAGGAGCTTCAGTGAATGAGATGATTATGGAACTTGCAAAGTTGAGCTACAATATCATGCAAATCCATCATCAGCAAGAGCTGAAAATAATTACAAGGTGGTGGAAGGATCTGCAACTTGAAACAAGGCTCTCCTTCGCAAGAGATAGAGTTGTGGAGTGCTACTTTTGGATAGCAGGAGTATATTTCGAGCCATGTTACTCTCGAGGTCGAATTATATTGACAAAAGTGCTAGCCATTGTGTCTATTTTGGACGATATTTATGATGTATATGGATCTCCAGAAGAGTGTGAACAGTTTACCAAATGTATAGAAAGCTTGTCGTTCCCGTCGTTTCGAAGGTTTGCGAGTGCGCTGGAAGTGTTCAAGAAGATTAATTGAAGACCCGTTATTACAAGACAGTAGATCTGGTTAGAGCTTACAACAAAGAGGTGAAATGGCGTGAAGAAGGTTACATTCCTGGAACAATTGATGAACACTTGCAGGTTTCAGCGAGGAGTGGTGCATGTCACCTGCTGTCTTGCACATCATTTGTAGGGATGGATGATATAGTTTCAAAAGACTGCTTTGATTGGGTATGTAGTGTGCCCAAAATAGTACAATCACTCTGCATAATTTTGAGGTTATCCGATGATCTTAAGTCATATGAGCGTGAGAGATTGACTTTACATGTAGCGTCGACAATAGATAGCTGCATGAAGGAACACAACATTGACATTGAAATGGCGTATGAGAAGATACATCTACTAATCGAGGAGTCATGGAAAGATTTCAATGGCGAGTGGTTGGATTCTGGTAATACTCAACCAATACAACTAATGGAACGAATATTCAACCTAACAAGAACGATGGAGTTCTTTTATAAGAAAGATGATGCATATACAAATGGCCACACAATCAAGGATAATATCTACTCGTTGTTCGTAGAGCCTGTAATGATGAGCTAATTTGTCAGATTCCGCATACAAACATCTATGATTTGTAGGCTATGGTTTGGTCTATTTAATAAGCACTATCACATTTGGTAATAAAAACCCAGTGTGCTTAAATCTCATATAAACACATATGAGCATTGTCAACATCTTAAGTTGCAAAACTCATAATAAATCTGTAGTT]

[+] EMBL CA766020             [CGAGACAAGGGGGAAGGCACCAAGGACCTAGCAGAAGGTGCCATTGTAAAAGCATAGAAGCCAAGAGAGATGACGAGTAGCATGAAGTTGCCCGCTACCTTCCTCTCCTTCAGTTCACATCAGCCCAGAGGAAGCTCCCATTGTTCTGTGGCCTCTGCTGCATATGCTGTTGAACCAAGACTTGGCGAAGGAGCAGTGGTGTCTAAGAAGACGCCAAGCCGTTCTCCCTGCAGGACGATGGCCAAGGTTGATGACAAGAATGATCTCTGCAGAATGAATCAAGCAAAGTTCGAGCCTTCCATCTGGGGAGATTTCTTCCTCTCTTACTGCAACCCGTTGGCTTACTCTGACAATCAGAGATCGATGGAAGAACGGGCAGAGTATCTGAAGAAAGAGGTGGCAAAACTCATAGTAAATTCAAGAACCGATAGCCTTCCGGAGAAGCTGCATCTTATAGATGTACTGGAGCGTCTCTGTGTGGACCATCTGTTCGAAGAGGAGATTAACGCTGTGATGGATGAAATTAGCGACGCCGATGTCAGTGACTGTGAACTGCATACTGTAGCTCTGTGGTTTTATCTTCTCCGTAAACATCGACACAGAGTTTCTCCAGATGTGTTTCTGAAGTTTAGAGATGAAGATGGAATTTTTGAGGCAGAAGACGCAAGGGACCTGCTAAGTCTTTACAATGCCGCTCATCTCACGACACATGGAGAGGGAATACTTTGATGAAGCTATTTCCTTCACTAAAAGGCAACTAAGATCATTGATGCCCAAAGNTGTTGAANGGGCACTAGCTCATGACATAAATTCTGCGCTTGAAATCCCTCTTCCTANAAGGGTTCGAATATATGAGGNCCAGTATTTTATGTCTACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK070116             [                                                                                             GCTACCTTCCTCTCCTTCAGTTCACATCAGCCCAGAGGAAGCTCCCATTGTTCTGTAGCCTCTGCTGCATATGCTGCTGAACCAAGACTCGGCGAAGGAGCAGTGGTGTCTAAGAAGACGCCAAGCCGTTCTCCCTGCAGGACGATGGCCAAGGTTGATGACAAGAATGATCTCTGCAGAATGAATCAAGCAAAGTTCGAGCCTTCCATCTGGGGAGATTTCTTCCTCTCTTACTGCAACCCGTTGGCTTACTCTGACAATCAGAGATCGATGGAAGAACGGGCAGAGTATCTGAAGAAAGAGGTGGCAAAACTCATAGTAAATTCAAGAACCGATAGCCTTCCGGAGAAGCTGCATCTTATAGATGTACTGGAGCGTCTCTGTGTGGACCATCTGTTCGAAGAGGAGATTAACGCTGTGATGGATGAAATTAGCGACGCCGATGTCAGTGACTGTGAACTGCATACTGTAGCTCTGTGGTTTTATCTTCTCCTTAAACATCGACACAGAGTTTCTCCAGATGTGTTTCTGAAGTTTAGAGATGAAGATGGAATTTTTGAGGCAGAAGACGCAAGGGACCTGCTAAGTCTTTACAATGCCGCTCATCTCACGACACATGGAGAGGGAATAC TTGATGAAGCTATTTCCTTCACTAAAAGGCAACTAAGATCATTGATGCCCAAAGTTGTTGAAGGGTCACTAGCTCATGACATAAATTCTGCGCTTGAGATCCCTCTCCCTAGAAGGGTTCGAATATATGAGGCCAAGTATTTTATGTCTACATATGAGAAAGGAGCTTCAGTGAATGAGATGATTATGGAACTTGCAAAGTTGAGCTACAATATCATGCAAATCCATCATCAGCAAGAGCTGAAAATAATTACAAGGTGGTGGAAGGATCTGCAACTTGAAACAAGGCTCTCCTTCGCAAGAGATAGAGTTGTGGAGTGCTACTTTTGGATAGCAGGAGTATATTTCGAGCCATGTTACTCTCGAGGTCGAATTATATTGACAAAAGTGCTAGCCATTGTGTCTATTTTGGACGATATTTATGATGTATATGGATCTCCAGAAGAGTGTGAACAGTTTACCAAATGTATAGAAAGCTTGTCGTTCCCGTCGTTTCGAAGGTTTGCGAGTGCGCTGGAAGTGTTCAAGAAGATTAATTGAAGACCCGTTATTACAAGACAGTAGATCTGGTTAGAGCTTACAACAAAGAGGTGAAATGGCGTGAAGAAGGTTACATTCCTGGAACAATTGATGAACACTTGCAGGTTTCAGCGAGGAGTGGTGCATGTCACCTGCTGTCTTGCACATCATTTGTAGGGATGGATGATATAGTTTCAAAAGACTGCTTTGATTGGGTATGTAGTGTGCCCAAAATAGTACAATCACTCTGCATAATTTTGAGGTTATCCGATGATCTTAAGTCATATGAGCGTGAGAGATTGACTTTACATGTAGCGTCGACAATAGATAGCTGCATGAAGGAACACAACATTGACATTGAAATGGCGTATGAGAAGATACATCTACTAATCGAGGAGTCATGGAAAGATTTCAATGGCGAGTGGTTGGATTCTGGTAATACTCAACCAATACAACTAATGGAACGAATATTCAACCTAACAAGAACGATGGAGTTCTTTTATAAGAAAGATGATGCATATACAAATGGCCACACAATCAAGGATAATATCTACTCGTTGTTCGTAGAGCCTGTAATGATGAGCTAATTTGTCAGATTCCGCATACAAACATCTATGATTTGTAGGCTATGGTTTGGTCTATTTAATAAGCACTATCACATTTGGTAATAAAAACCCAGTGTGCTTAAATCTCATATAAACACATATGAGCATTGTCAACATCTTAAGTTGCAAAACTCATAATAAATCTGTAGTT]


>consensus_3208#0 CGAGACAAGGGGGAAGGCACCAAGGACCTAGCAGAAGGTGCCATTGTAAAAGCATAGAAG CCAAGAGAGATGACGAGTAGCATGAAGTTGCCCGCTACCTTCCTCTCCTTCAGTTCACAT CAGCCCAGAGGAAGCTCCCATTGTTCTGTGGCCTCTGCTGCATATGCTGTTGAACCAAGA CTTGGCGAAGGAGCAGTGGTGTCTAAGAAGACGCCAAGCCGTTCTCCCTGCAGGACGATG GCCAAGGTTGATGACAAGAATGATCTCTGCAGAATGAATCAAGCAAAGTTCGAGCCTTCC ATCTGGGGAGATTTCTTCCTCTCTTACTGCAACCCGTTGGCTTACTCTGACAATCAGAGA TCGATGGAAGAACGGGCAGAGTATCTGAAGAAAGAGGTGGCAAAACTCATAGTAAATTCA AGAACCGATAGCCTTCCGGAGAAGCTGCATCTTATAGATGTACTGGAGCGTCTCTGTGTG GACCATCTGTTCGAAGAGGAGATTAACGCTGTGATGGATGAAATTAGCGACGCCGATGTC AGTGACTGTGAACTGCATACTGTAGCTCTGTGGTTTTATCTTCTCCGTAAACATCGACAC AGAGTTTCTCCAGATGTGTTTCTGAAGTTTAGAGATGAAGATGGAATTTTTGAGGCAGAA GACGCAAGGGACCTGCTAAGTCTTTACAATGCCGCTCATCTCACGACACATGGAGAGGGA ATACTTTGATGAAGCTATTTCCTTCACTAAAAGGCAACTAAGATCATTGATGCCCAAAGN TGTTGAANGGGCACTAGCTCATGACATAAATTCTGCGCTTGAAATCCCTCTTCCTANAAG GGTTCGAATATATGAGGNCCAGTATTTTATGTCTACATATGAGAAAGGAGCTTCAGTGAA TGAGATGATTATGGAACTTGCAAAGTTGAGCTACAATATCATGCAAATCCATCATCAGCA AGAGCTGAAAATAATTACAAGGTGGTGGAAGGATCTGCAACTTGAAACAAGGCTCTCCTT CGCAAGAGATAGAGTTGTGGAGTGCTACTTTTGGATAGCAGGAGTATATTTCGAGCCATG TTACTCTCGAGGTCGAATTATATTGACAAAAGTGCTAGCCATTGTGTCTATTTTGGACGA TATTTATGATGTATATGGATCTCCAGAAGAGTGTGAACAGTTTACCAAATGTATAGAAAG CTTGTCGTTCCCGTCGTTTCGAAGGTTTGCGAGTGCGCTGGAAGTGTTCAAGAAGATTAA TTGAAGACCCGTTATTACAAGACAGTAGATCTGGTTAGAGCTTACAACAAAGAGGTGAAA TGGCGTGAAGAAGGTTACATTCCTGGAACAATTGATGAACACTTGCAGGTTTCAGCGAGG AGTGGTGCATGTCACCTGCTGTCTTGCACATCATTTGTAGGGATGGATGATATAGTTTCA AAAGACTGCTTTGATTGGGTATGTAGTGTGCCCAAAATAGTACAATCACTCTGCATAATT TTGAGGTTATCCGATGATCTTAAGTCATATGAGCGTGAGAGATTGACTTTACATGTAGCG TCGACAATAGATAGCTGCATGAAGGAACACAACATTGACATTGAAATGGCGTATGAGAAG ATACATCTACTAATCGAGGAGTCATGGAAAGATTTCAATGGCGAGTGGTTGGATTCTGGT AATACTCAACCAATACAACTAATGGAACGAATATTCAACCTAACAAGAACGATGGAGTTC TTTTATAAGAAAGATGATGCATATACAAATGGCCACACAATCAAGGATAATATCTACTCG TTGTTCGTAGAGCCTGTAATGATGAGCTAATTTGTCAGATTCCGCATACAAACATCTATG ATTTGTAGGCTATGGTTTGGTCTATTTAATAAGCACTATCACATTTGGTAATAAAAACCC AGTGTGCTTAAATCTCATATAAACACATATGAGCATTGTCAACATCTTAAGTTGCAAAAC TCATAATAAATCTGTAGTT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)