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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_321#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTCACAAAAATGGCCCAAATCATAACACCAACCGCATCGTTAAGGTACTTGTATGGCCAAAAAACAACACAAATAACTGACGACGGCCACTCATTTTTACTCAAATAAAAGGGCTCCAAAGTTATACATGACAGTCTTTGTTTTATCAGCCCAGGGTTGACTAAAAGGACATTTTTATGCTAAGTTGCCATAAATTTTTAGCAATCGAAAGTTTTTTCAAACAAAGGACATGGGCCAATTTTTTAAGCTAGCAAAGGAATCTTTAATCATTCTGTTCTTTGGGAGGATTTTTAAAATGGAACTATTCGTTGATTTTGTACTAAACAAACAATGAACCGTAGCAAATTTGGACAATTATGCAGGGAATACATAACATCTGCCAACAGGGAAAATTTTATCTCATCAATCGGGGGAATTCCCAGATAATAATACCATATACCAGGTTACCACCTCTTTTTGACTTCTAAGGGAAAAACTCAAATGTCGGTAACCAGTCTTAAAAGCAGGATGGTAAAAATTCTGCTCAGTGTTACAAAACGTACGATAATACTCAAAATAGCCTCCATTGATGGAATTCAGGCATGACCTTCGGAGTGTTAGCCTCTACAACATTGGCCAGAAACTCATCGTTTTTTTAACCATATTTGCTTTCAGGGTATGATTTGCAT]
[+] EMBL CA760430 [TTTTTTTTTTTTTTTTTTTTTTTTTTCACAAAAATGGCCCAAATCATAACACCAACCGCATCGTTAAGGTACTTGTATGGCCAAAAAACAACACAAATAACTGACGACGGCCACTCATTTTTACTCAAATAAAAGGGCTCCAAAGTTATACATGACAGTCTTTGTTTTATCAGCCCAGGGTTGACTAAAAGGACATTTTTATGCTAAGTTGCCATAAATTTTTAGCAATCGAAAGTTTTTTCAAACAAAGGACATGGGCCAATTTTTTAAGCTAGCAAAGGAATCTTTAATCATTCTGTTCTTTGGGAGGATTTTTAAAATGGAACTATTCGTTGATTTTGTACTAAACAAACAATGAACCGTAGCAAATTTGGACAATTATGCAGGGAATACATAACATCTGCCAACAGGGAAAATTTTATCTCATCAATCGGGGGAATTCCCAGATAATAATACCATATACCAGGTTACCACCTCTTTTTGACTTCTAAGGGAAAAACTCAAATGTCGGTAACCAGTCTTAAAAGCAGGATGGTAAAAATTCTGCTCAGTGTTACAAAACGTACGATAATACTCAAAATAGCCTCCATTGATGGAATTCAGGCATGACCTTCGGAGTGTTAGCCTCTACAACATTGGCCAGAAACTCATCGTTTTTTTAACCATATTTGCTTTCAGGGTATGATTTGCAT]
consensusID : consensus_321#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[TTTTTTTTTTTTTAAATAAAAATTATCATCTGATTATTATTATTATTATTATTATAACACGAATTCAGGTACACTTTCAGCCATAAACAACACAAATGACCGACTACATCCACTCATTCTAGTTCACATAGATGGTCCAGATCATAACACCAACCGCATCGCTCAGGTACATGTATAGCCAAGAAACAACACAAATGACTGACGACGGCCACTCATTTCTACTCAAATCATAGTGCTCCAAAGCTATACATGACAGTCTCTGTTCTATCAGTCCAAGGTTGACTAAAATGACAATTTTATGCTAAGTTGCCATAAATTTTTAGCAATCGTAAGTTCTTTCATACTAATGACATGTGCCAATTTTCTAAGCTAGCAAAGGAATCTCTAATCATTCTGTTCTCTGGGAGGATTTTTCAGATGGGACTATTCGTTGATATTGTACTAAACAGACNATGAAACATAGCATATCTGGACGATTATGCAGGGAATACATAACATCTGCCAACATGGTAAATTCTATCTCATCAATCGTGTGAATTCCCAGATGATAATACCATATACCAAGTTACCAACTCTTCTTGACTTCTCATGGAGAAACTCATATGTCGGGGACCAGTCTTAGGAGCATGAGGGGGAAAATTCTGCTCAAGGGTACNAAACGTACGATAATACTCAAAAA]
[+] EMBL CA761306 [TTTTTTTTTTTTTAAATAAAAATTATCATCTGATTATTATTATTATTATTATTATAACACGAATTCAGGTACACTTTCAGCCATAAACAACACAAATGACCGACTACATCCACTCATTCTAGTTCACATAGATGGTCCAGATCATAACACCAACCGCATCGCTCAGGTACATGTATAGCCAAGAAACAACACAAATGACTGACGACGGCCACTCATTTCTACTCAAATCATAGTGCTCCAAAGCTATACATGACAGTCTCTGTTCTATCAGTCCAAGGTTGACTAAAATGACAATTTTATGCTAAGTTGCCATAAATTTTTAGCAATCGTAAGTTCTTTCATACTAATGACATGTGCCAATTTTCTAAGCTAGCAAAGGAATCTCTAATCATTCTGTTCTCTGGGAGGATTTTTCAGATGGGACTATTCGTTGATATTGTACTAAACAGACNATGAAACATAGCATATCTGGACGATTATGCAGGGAATACATAACATCTGCCAACATGGTAAATTCTATCTCATCAATCGTGTGAATTCCCAGATGATAATACCATATACCAAGTTACCAACTCTTCTTGACTTCTCATGGAGAAACTCATATGTCGGGGACCAGTCTTAGGAGCATGAGGGGGAAAATTCTGCTCAAGGGTACNAAACGTACGATAATACTCAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_321#0 ------------------------------------------------------------
consensus_321#1 TTTTTTTTTTTTTAAATAAAAATTATCATCTGATTATTATTATTATTATTATTATAACAC 60
consensus_321#0 --------------------------------------TTTTTTTTTTTTTTTTTTTTTT 22
consensus_321#1 GAATTCAGGTACACTTTCAGCCATAAACAACACAAATGACCGACTACATCCACTCATTCT 120
* * * ** *
consensus_321#0 TTTTCACAAAAATGGCCCAAATCATAACACCAACCGCATCGTTAAGGTACTTGTATGGCC 82
consensus_321#1 AGTTCACATAGATGGTCCAGATCATAACACCAACCGCATCGCTCAGGTACATGTATAGCC 180
****** * **** *** ********************* * ****** ***** ***
consensus_321#0 AAAAAACAACACAAATAACTGACGACGGCCACTCATTTTTACTCAAATAAAAGGGCTCCA 142
consensus_321#1 AAGAAACAACACAAATGACTGACGACGGCCACTCATTTCTACTCAAATCATAGTGCTCCA 240
** ************* ********************* ********* * ** ******
consensus_321#0 AAGTTATACATGACAGTCTTTGTTTTATCAGCCCAGGGTTGACTAAAAGGACATTTTTAT 202
consensus_321#1 AAGCTATACATGACAGTCTCTGTTCTATCAGTCCAAGGTTGACTAAAATGACAATTTTAT 300
*** *************** **** ****** *** ************ **** ******
consensus_321#0 GCTAAGTTGCCATAAATTTTTAGCAATCGAAAGTTTTTTCAAACAAAGGACATGGGCCAA 262
consensus_321#1 GCTAAGTTGCCATAAATTTTTAGCAATCGTAAGTTCTTTCATACTAATGACATGTGCCAA 360
***************************** ***** ***** ** ** ****** *****
consensus_321#0 TTTTTTAAGCTAGCAAAGGAATCTTTAATCATTCTGTTCTTTGGGAGGATTTTTAAAATG 322
consensus_321#1 TTTTCTAAGCTAGCAAAGGAATCTCTAATCATTCTGTTCTCTGGGAGGATTTTTCAGATG 420
**** ******************* *************** ************* * ***
consensus_321#0 GAACTATTCGTTGATTTTGTACTAAACAAACAATGAACCGTAGCAAATTTGGACAATTAT 382
consensus_321#1 GGACTATTCGTTGATATTGTACTAAACAGACNATGAAACATAGCATATCTGGACGATTAT 480
* ************* ************ ** ***** * ***** ** ***** *****
consensus_321#0 GCAGGGAATACATAACATCTGCCAACAGGGAAAATTTTATCTCATCAATCGGGGGAATTC 442
consensus_321#1 GCAGGGAATACATAACATCTGCCAACATGGTAAATTCTATCTCATCAATCGTGTGAATTC 540
*************************** ** ***** ************** * ******
consensus_321#0 CCAGATAATAATACCATATACCAGGTTACCACCTCTTTTTGACTTCTAAGGGAAAAACTC 502
consensus_321#1 CCAGATGATAATACCATATACCAAGTTACCAACTCTTCTTGACTTCTCATGGAGAAACTC 600
****** **************** ******* ***** ********* * *** ******
consensus_321#0 AAATGTCGGTAACCAGTCTTAAAAGCAGGATGGTAAAAATTCTGCTCAGTGTTACAAAAC 562
consensus_321#1 ATATGTCGGGGACCAGTCTTAGGAGCATGAGGGGGAAAATTCTGCTCAAGGGTACNAAAC 660
* ******* ********** **** ** ** ************* * *** ****
consensus_321#0 GTACGATAATACTCAAAATAGCCTCCATTGATGGAATTCAGGCATGACCTTCGGAGTGTT 622
consensus_321#1 GTACGATAATACTCAAAAA----------------------------------------- 679
******************
consensus_321#0 AGCCTCTACAACATTGGCCAGAAACTCATCGTTTTTTTAACCATATTTGCTTTCAGGGTA 682
consensus_321#1 ------------------------------------------------------------
consensus_321#0 TGATTTGCAT 692
consensus_321#1 ----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||