These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3217#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 794 fasta sequence [AGGTAGCTGACCATACTTCCAACGGAATTTTCTCAAATAGTCCCAAATTGCCACCTCGGGGAAAGTCACCAACGAGTAAGATGAGAGGAGGTGCAGCAGCAGCATCAACTTGTGATAACTCAAATAATACGAGGCCTGAAAGCTGCAGCAACCAATTATCAGAAGACACTGTACAGAGCAGCCGAATTTTGAGAGAAATAGCTTCTCCGCAACTTGATGAGTTAGGAAACAAAATCCATTCTGATGTCCAAGATAGCCCAAGTGTGAGCTTCGCTGAAAGGCAGAGAAAGTGGAAAGAAGAATTGGTCCAGGAGCTTGAGAGGGAAAGAGTGATGAGATTAGCTAGCTGTGGCAAAACGCCGTCCCCGAATAGAGGGCCTAATGGGAAGCGAGAGCGACATCCTGCCCATTGAGAACAGACAACAACAATCACTGTTTCTTCATTTCATCCCACAGAACAACCAGTGCGTACCGATGCCGGGGCAATCCGCATAGAATCCTCGTTGAAGTGTACCGATGCTGGGGCAGCCATCACGGCTGATCAGGATCATTATCGTGGTATTGCCTGGAAAACGTTGTGCTGGAGTAGTTCTTTGCTGGCGAGGCTGCATTTTTCATTTTTTTTTAATGATGTGTGCTGTTTAGCCGCATAGTTGATATTGGAAAAGTGTTGTATAAATTTTGGGTTTGTAAACAAAAAAAAAAGGGCTTGGGGCTTTGNTTTGAAAGCATGTAATAAGCCAAGTAATGCAAATTATGGGAAGACTTGATTTTGGGAGCTTTGGGGCCACTAC] [+] EMBL CB096509 [AGGTAGCTGACCATACTTCCAACGGAATTTTCTCAAATAGTCCCAAATTGCCACCTCGGGGAAAGTCACCAACGAGTAAGATGAGAGGAGGTGCAGCAGCAGCATCAACTTGTGATAACTCAAATAATACGAGGCCTGAAAGCTGCAGCAACCAATTATCAGAAGACACTGTACAGAGCAGCCGAATTTTGAGAGAAATAGCTTCTCCGCAACTTGATGAGTTAGGAAACAAAATCCATTCTGATGTCCAAGATAGCCCAAGTGTGAGCTTCGCTGAAAGGCAGAGAAAGTGGAAAGAAGAATTGGTCCAGGAGCTTGAGAGGGAAAGAGTGATGAGATTAGCTAGCTGTGGCAAAACGCCGTCCCCGAATAGAGGGCCTAATGGGAAGCGAGAGCGACATCCTGCCCATTGAGAACAGACAACAACAATCACTGTTTCTTCATTTCATCCCACAGAACAACCAGTGCGTACCGATGCCGGGGCAATCCGCATAGAATCCTCGTTGAAGTGTACCGATGCTGGGGCAGCCATCACGGCTGATCAGGATCATTATCGTGGTATTGCCTGGAAAACGTTGTGCTGGAGTAGTTCTTTGCTGGCGAGGCTGCATTTTTCATTTTTTTTTAATGATGTGTGCTGTTTAGCCGCATAGTTGATATTGGAAAAGTGTTGTATAAATTTTGGGTTTGTAAACAAAAAAAAAAGGGCTTGGGGCTTTGNTTTGAAAGCATGTAATAAGCCAAGTAATGCAAATTATGGGAAGACTTGATTTTGGGAGCTTTGGGGCCACTAC] consensusID : consensus_3217#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 763 fasta sequence [TTCTCATCAATNATGGAATTTGGTGGATNNGCTAAACATGCTGAAAGCAGCATGACCGAAAATGATTTTACTTTTCCTTGCGAAGGAAGTTGTGAAGATGATGATGTACTTACAGAATCGAAAATAAAAGCATTTCTTGACGAGAAGGCTCTTGATCTGAAGAAGCTACAAACACCTTTATATGAGGAGTTCTACAACACGGTGAATGCTGGGAATTCTCAGGTAGCTGACCATACTTCCAACGGAATTTTCTCAAATAGTCCCAAATTGCCACCTCGGGGAAAGTCACCGACGAGTAAGATGAGAGGAGGTGCAGCAGCAGCATCAACTTGTGATAACTCAAATAATACGAGGCCTGAAAGCTGCAGCAACCAATTATCAGAAGACACTGTACAGAGCAGCCGAATTTTGAGAGAAATAGCTTCTCCGCAACTTGATGAGTTAGGAAACAAAATCCATTCTGATGTCCAAGATAGCCCAAGTGTGAGCTTCGCTGAAAGGCAGAGAAAGTGGAAAGAAGAATTGGTCCAGGAGCTTGAGAGGGAAAGAGTGATGAGATTAGCTAGCTGTGGCAAAACGCCGTCCCCGAATAGAGGGCCTAATGGGAAGCGAGAGCGACATCCTGCCCATTGAGAACAGACAACAACAATCACTGTTTCTTCATTTCATCCCACAGGAACAACCAGTGGTAAGTGGTAACTATACAATGCTTGCGATTGGTGTCAGCAGCAGTATATAGCATACACTGGCTGATCATTCGAGG] [+] EMBL CA766100 [TTCTCATCAATNATGGAATTTGGTGGATNNGCTAAACATGCTGAAAGCAGCATGACCGAAAATGATTTTACTTTTCCTTGCGAAGGAAGTTGTGAAGATGATGATGTACTTACAGAATCGAAAATAAAAGCATTTCTTGACGAGAAGGCTCTTGATCTGAAGAAGCTACAAACACCTTTATATGAGGAGTTCTACAACACGGTGAATGCTGGGAATTCTCAGGTAGCTGACCATACTTCCAACGGAATTTTCTCAAATAGTCCCAAATTGCCACCTCGGGGAAAGTCACCGACGAGTAAGATGAGAGGAGGTGCAGCAGCAGCATCAACTTGTGATAACTCAAATAATACGAGGCCTGAAAGCTGCAGCAACCAATTATCAGAAGACACTGTACAGAGCAGCCGAATTTTGAGAGAAATAGCTTCTCCGCAACTTGATGAGTTAGGAAACAAAATCCATTCTGATGTCCAAGATAGCCCAAGTGTGAGCTTCGCTGAAAGGCAGAGAAAGTGGAAAGAAGAATTGGTCCAGGAGCTTGAGAGGGAAAGAGTGATGAGATTAGCTAGCTGTGGCAAAACGCCGTCCCCGAATAGAGGGCCTAATGGGAAGCGAGAGCGACATCCTGCCCATTGAGAACAGACAACAACAATCACTGTTTCTTCATTTCATCCCACAGGAACAACCAGTGGTAAGTGGTAACTATACAATGCTTGCGATTGGTGTCAGCAGCAGTATATAGCATACACTGGCTGATCATTCGAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3217#0 ------------------------------------------------------------ consensus_3217#1 TTCTCATCAATNATGGAATTTGGTGGATNNGCTAAACATGCTGAAAGCAGCATGACCGAA 60 consensus_3217#0 ------------------------------------------------------------ consensus_3217#1 AATGATTTTACTTTTCCTTGCGAAGGAAGTTGTGAAGATGATGATGTACTTACAGAATCG 120 consensus_3217#0 ------------------------------------------------------------ consensus_3217#1 AAAATAAAAGCATTTCTTGACGAGAAGGCTCTTGATCTGAAGAAGCTACAAACACCTTTA 180 consensus_3217#0 ----------------------------------------AGGTAGCTGACCATACTTCC 20 consensus_3217#1 TATGAGGAGTTCTACAACACGGTGAATGCTGGGAATTCTCAGGTAGCTGACCATACTTCC 240 ******************** consensus_3217#0 AACGGAATTTTCTCAAATAGTCCCAAATTGCCACCTCGGGGAAAGTCACCAACGAGTAAG 80 consensus_3217#1 AACGGAATTTTCTCAAATAGTCCCAAATTGCCACCTCGGGGAAAGTCACCGACGAGTAAG 300 ************************************************** ********* consensus_3217#0 ATGAGAGGAGGTGCAGCAGCAGCATCAACTTGTGATAACTCAAATAATACGAGGCCTGAA 140 consensus_3217#1 ATGAGAGGAGGTGCAGCAGCAGCATCAACTTGTGATAACTCAAATAATACGAGGCCTGAA 360 ************************************************************ consensus_3217#0 AGCTGCAGCAACCAATTATCAGAAGACACTGTACAGAGCAGCCGAATTTTGAGAGAAATA 200 consensus_3217#1 AGCTGCAGCAACCAATTATCAGAAGACACTGTACAGAGCAGCCGAATTTTGAGAGAAATA 420 ************************************************************ consensus_3217#0 GCTTCTCCGCAACTTGATGAGTTAGGAAACAAAATCCATTCTGATGTCCAAGATAGCCCA 260 consensus_3217#1 GCTTCTCCGCAACTTGATGAGTTAGGAAACAAAATCCATTCTGATGTCCAAGATAGCCCA 480 ************************************************************ consensus_3217#0 AGTGTGAGCTTCGCTGAAAGGCAGAGAAAGTGGAAAGAAGAATTGGTCCAGGAGCTTGAG 320 consensus_3217#1 AGTGTGAGCTTCGCTGAAAGGCAGAGAAAGTGGAAAGAAGAATTGGTCCAGGAGCTTGAG 540 ************************************************************ consensus_3217#0 AGGGAAAGAGTGATGAGATTAGCTAGCTGTGGCAAAACGCCGTCCCCGAATAGAGGGCCT 380 consensus_3217#1 AGGGAAAGAGTGATGAGATTAGCTAGCTGTGGCAAAACGCCGTCCCCGAATAGAGGGCCT 600 ************************************************************ consensus_3217#0 AATGGGAAGCGAGAGCGACATCCTGCCCATTGAGAACAGACAACAACAATCACTGTTTCT 440 consensus_3217#1 AATGGGAAGCGAGAGCGACATCCTGCCCATTGAGAACAGACAACAACAATCACTGTTTCT 660 ************************************************************ consensus_3217#0 TCATTTCATCCCACAG-AACAACCAGTGCGTACCGATGCCGGGGCAATCCGCATAGAATC 499 consensus_3217#1 TCATTTCATCCCACAGGAACAACCAGTGGTAAGTGGTAACTATACAAT--GCTTGCGATT 718 **************** *********** * * * * **** ** * ** consensus_3217#0 CTCGTTGAAGTGTACCGATGCTGGGGCAGCCATCACGGCTGATCAGGATCATTATCGTGG 559 consensus_3217#1 GGTGTCA----GCAGCAGTA-TATAGCATACACT--GGCTGATCAT--TCGAGG------ 763 ** * * * * * *** ** ********* ** consensus_3217#0 TATTGCCTGGAAAACGTTGTGCTGGAGTAGTTCTTTGCTGGCGAGGCTGCATTTTTCATT 619 consensus_3217#1 ------------------------------------------------------------ consensus_3217#0 TTTTTTTAATGATGTGTGCTGTTTAGCCGCATAGTTGATATTGGAAAAGTGTTGTATAAA 679 consensus_3217#1 ------------------------------------------------------------ consensus_3217#0 TTTTGGGTTTGTAAACAAAAAAAAAAGGGCTTGGGGCTTTGNTTTGAAAGCATGTAATAA 739 consensus_3217#1 ------------------------------------------------------------ consensus_3217#0 GCCAAGTAATGCAAATTATGGGAAGACTTGATTTTGGGAGCTTTGGGGCCACTAC 794 consensus_3217#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||