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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3219#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1540 fasta sequence
[GATTTTACTTGCGTCAGCTCCGGCTACCGTGGTCAATGTGCACAATATTTCATTTGGTCCTCACCTCAGCCCTGTAGGCATGCAGGCAGCAGGCCTTCAGTTACTGCATCCCTTCGGAATCGTTAAATGAACAGTATTCAAGCAGCCGCAGGAGTATGTGTCCGGTGTCCCACTGACACCGATAAGCAGCGACAACGTCGACACTCAACATATCCCATCCCTTCCTTATCCCAACGACCTGCACGCTGCATTTTCATCACTAGCATCAGTGTATTCAAACCTGCAGCTTACACTGAAGAGTGAAGACTGAACTCCACAGATATGTTGGCCGAGGGAAGGCAAGTCTACTTGCCGCCGCCGCCGCCGTCCAAGCTTCCTCGTCTCTCCGGCACCGATCCAACCGACGGCGTGGTGACGATGGCAGCGCCGTCGCCGCTGGTTCTTGGGCTGGGTCTCGGTCTGGGCGGCAGCGGCAGCGACAGCAGTGGGAGCGACGCGGAAGCGTCTGCGGCCACCGTGCGGGAGGCGCGGCCGCCGTCGGCGCTGACGTTCATGCAGCGGCAGGAGCTGGAGCAGCAGGTGCTCATCTACCGCTACTTCGCCGCCGGCGCGCCTGTGCCGGTTCACCTCGTGCTGCCCATATGGAAGAGCATCGCCGCCGCCTCCTCGTTCGGCCCGCAAAGCTTTCCCTCCCTGACGGGCCTGGGGAGCCTGTGCTTCGACTACAGGAGCAGCATGGAGCCGGAGCCGGGGCGGTGCCGGCGCACGGACGGCAAGAAGTGGCGGTGCTCGCGCGACGTGGTGCCGGGGCACAAGTATTGCGAGCGGCACGTCCACCGTGGCCACGGCCGTTCAAGAAAGCCTATGGAAGCCTCTGCAGCAGTCGCTCCCACATATCTCCCGGTCCGGCCGGCACTCCACACCGTCGCCACCCTCGCCACCAGCGCGCCATCGCTGTCGCACCTCGGTTTCTCCTCCGCCAGCAAAGTGCTCCTCGCCCACACCACCACCGGCACCACGCGCGCTACTTGATCTCATTGTTATCTCCGAGGATTATGCCGGTGCACTGTCTGTAACCTTTTTCTCGTAATCACGCCTCGGTTTGTTCCCAATGCATCGTCACGCATTGCTAGTTTGACAGTTTGCTACCGCTGCCTCTGTGTGTGCCTGTGCGTGTGGCAGCCGAGGTGTTTTTGTTTGGTTGGGTGGTGGGAGGCGCGCCCCGGTGCGGTGGTGGGCGTGGCCCCCGGCTACCTAGTGCTGGTTCCTGCGTGTGCCTGTCGAACCTGTGGAGCGTGGTCGGAAGTACGGTACGCACTGTCCGGTCTCATATGCCGGGGCAGAGGGGTTCGGTCCAGTGTGGTGCAGGCGTGCGGATTGGGATCACATGCAGTGGCTACTGCAACTTATGCAGTCCTAAAGACACCATTGAATTATAAATTAACGTCCTAGATCTTTCCTTGATACTGTTCACAAATAACAGTGAAAAGTTCCTTCCTGTAGCAGGTACTATAGCAATTACTGTTTAAAATAACTGTAG]
[+] EMBL AK110934 [GATTTTACTTGCGTCAGCTCCGGCTACCGTGGTCAATGTGCACAATATTTCATTTGGTCCTCACCTCAGCCCTGTAGGCATGCAGGCAGCAGGCCTTCAGTTACTGCATCCCTTCGGAATCGTTAAATGAACAGTATTCAAGCAGCCGCAGGAGTATGTGTCCGGTGTCCCACTGACACCGATAAGCAGCGACAACGTCGACACTCAACATATCCCATCCCTTCCTTATCCCAACGACCTGCACGCTGCATTTTCATCACTAGCATCAGTGTATTCAAACCTGCAGCTTACACTGAAGAGTGAAGACTGAACTCCACAGATATGTTGGCCGAGGGAAGGCAAGTCTACTTGCCGCCGCCGCCGCCGTCCAAGCTTCCTCGTCTCTCCGGCACCGATCCAACCGACGGCGTGGTGACGATGGCAGCGCCGTCGCCGCTGGTTCTTGGGCTGGGTCTCGGTCTGGGCGGCAGCGGCAGCGACAGCAGTGGGAGCGACGCGGAAGCGTCTGCGGCCACCGTGCGGGAGGCGCGGCCGCCGTCGGCGCTGACGTTCATGCAGCGGCAGGAGCTGGAGCAGCAGGTGCTCATCTACCGCTACTTCGCCGCCGGCGCGCCTGTGCCGGTTCACCTCGTGCTGCCCATATGGAAGAGCATCGCCGCCGCCTCCTCGTTCGGCCCGCAAAGCTTTCCCTCCCTGACGGGCCTGGGGAGCCTGTGCTTCGACTACAGGAGCAGCATGGAGCCGGAGCCGGGGCGGTGCCGGCGCACGGACGGCAAGAAGTGGCGGTGCTCGCGCGACGTGGTGCCGGGGCACAAGTATTGCGAGCGGCACGTCCACCGTGGCCACGGCCGTTCAAGAAAGCCTATGGAAGCCTCTGCAGCAGTCGCTCCCACATATCTCCCGGTCCGGCCGGCACTCCACACCGTCGCCACCCTCGCCACCAGCGCGCCATCGCTGTCGCACCTCGGTTTCTCCTCCGCCAGCAAAGTGCTCCTCGCCCACACCACCACCGGCACCACGCGCGCTACTTGATCTCATTGTTATCTCCGAGGATTATGCCGGTGCACTGTCTGTAACCTTTTTCTCGTAATCACGCCTCGGTTTGTTCCCAATGCATCGTCACGCATTGCTAGTTTGACAGTTTGCTACCGCTGCCTCTGTGTGTGCCTGTGCGTGTGGCAGCCGAGGTGTTTTTGTTTGGTTGGGTGGTGGGAGGCGCGCCCCGGTGCGGTGGTGGGCGTGGCCCCCGGCTACCTAGTGCTGGTTCCTGCGTGTGCCTGTCGAACCTGTGGAGCGTGGTCGGAAGTACGGTACGCACTGTCCGGTCTCATATGCCGGGGCAGAGGGGTTCGGTCCAGTGTGGTGCAGGCGTGCGGATTGGGATCACATGCAGTGGCTACTGCAACTTATGCAGTCCTAAAGACACCATTGAATTATAAATTAACGTCCTAGATCTTTCCTTGATACTGTTCACAAATAACAGTGAAAAGTTCCTTCCTGTAGCAGGTACTATAGCAATTACTGTTTAAAATAACTGTAG]
consensusID : consensus_3219#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 875 fasta sequence
[CTGCCCCCCGTCTTCTTTCTTCATTCCTCTTCCCACCAAGAACCCCAAACCTTACCTCCATTGAGTTCGAAACCGAGGAGCGAGGAGCTACAAGCCGAGTTGTCAGAATGGATGAGGAGAAGGAAGCCGACTCGCCGCAGCCACCGTCCAAGCTGCCTCGCCTCTCCGGCGCTGACCCGAATGCCGGAGTGGTGACCATGGCAGCACCCCCGCCGCCGGTGGGTCTTGGGCTGGGGCTTGGACTCGGCGGCGACAGCCGCGGCGAGCGTGACGTGGAAGCGTCGGCGGCGGCGGCGCACAAGGCGACGGCGCTGACGTTCATGCAGCAGCAGGAGCTGGAGCACCAGGTGCTCATCTACCGCTACTTCGCCGCGGGCGCGCCCGTGCCGGTGCACCTCGTGCTCCCCATCTGGAAGAGCGTCGCGTCCTCCTCCTTCGGCCCGCACCGCTTCCCTTCCCTGGCAGTGATGGGGTTGGGGAACCTGTGCTTCGACTACCGGAGCAGCATGGAGCCGGACCCAGGGCGGTGCAGGCGCACGGACGGCAAGAAGTGGCGGTGCTCGCGCGACGTGGTGCCGGGGCACAAGTACTGCGAGCGGCACGTCCACCGCGGACGCGGCCGTTCAAGAAAGCCTGTGGAAGCCTCCGCGGCCGCCACCCCGGCGAACAACGGCGGCGGCGGTGGCATCGTCTTCTCCCCCACCAGCGTCCTCCTCGCCCACGGCACCGCGCGCGCCACCTGACCAGTGACCAGACCGGCGCCTGTTTGTTTGTTTGTCTCGGCGCATGGGAAAACCCAAATCCGCAGGGATTATGTCATGTCCTGTAACTCTTTTTTTCCTCGCAACTTTTGAAGCCAAAACAATTCTCACCGT]
[+] EMBL AK108170 [CTGCCCCCCGTCTTCTTTCTTCATTCCTCTTCCCACCAAGAACCCCAAACCTTACCTCCATTGAGTTCGAAACCGAGGAGCGAGGAGCTACAAGCCGAGTTGTCAGAATGGATGAGGAGAAGGAAGCCGACTCGCCGCAGCCACCGTCCAAGCTGCCTCGCCTCTCCGGCGCTGACCCGAATGCCGGAGTGGTGACCATGGCAGCACCCCCGCCGCCGGTGGGTCTTGGGCTGGGGCTTGGACTCGGCGGCGACAGCCGCGGCGAGCGTGACGTGGAAGCGTCGGCGGCGGCGGCGCACAAGGCGACGGCGCTGACGTTCATGCAGCAGCAGGAGCTGGAGCACCAGGTGCTCATCTACCGCTACTTCGCCGCGGGCGCGCCCGTGCCGGTGCACCTCGTGCTCCCCATCTGGAAGAGCGTCGCGTCCTCCTCCTTCGGCCCGCACCGCTTCCCTTCCCTGGCAGTGATGGGGTTGGGGAACCTGTGCTTCGACTACCGGAGCAGCATGGAGCCGGACCCAGGGCGGTGCAGGCGCACGGACGGCAAGAAGTGGCGGTGCTCGCGCGACGTGGTGCCGGGGCACAAGTACTGCGAGCGGCACGTCCACCGCGGACGCGGCCGTTCAAGAAAGCCTGTGGAAGCCTCCGCGGCCGCCACCCCGGCGAACAACGGCGGCGGCGGTGGCATCGTCTTCTCCCCCACCAGCGTCCTCCTCGCCCACGGCACCGCGCGCGCCACCTGACCAGTGACCAGACCGGCGCCTGTTTGTTTGTTTGTCTCGGCGCATGGGAAAACCCAAATCCGCAGGGATTATGTCATGTCCTGTAACTCTTTTTTTCCTCGCAACTTTTGAAGCCAAAACAATTCTCACCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3219#0 GATTTTACTTGCGTCAGCTCCGGCTACCGTGGTCAATGTGCACAATATTTCATTTGGTCC 60
consensus_3219#1 ------------------------------------------------------------
consensus_3219#0 TCACCTCAGCCCTGTAGGCATGCAGGCAGCAGGCCTTCAGTTACTGCATCCCTTCGGAAT 120
consensus_3219#1 ------------------------------------------------------------
consensus_3219#0 CGTTAAATGAACAGTATTCAAGCAGCCGCAGGAGTATGTGTCCGGTGTCCCACTGACACC 180
consensus_3219#1 ------------------------------------------------------------
consensus_3219#0 GATAAGCAGCGACAACGTCGACACTCAACATATCCCATCCCTTCCTTATCCCAACGACCT 240
consensus_3219#1 -----------------------------CTGCCCCCCGTCTTCTTTCTTCATTCCTCTT 31
* *** **** ** * * * * *
consensus_3219#0 GC-ACGCTGCATTTTCATCACTAGCATCAGTGTATTCAAACCTGCAGCTTACACTGAAGA 299
consensus_3219#1 CCCACCAAGAACCCCAAACCTTACCTCCATTGAGTTCGAAACCGAGG-----AGCGAGGA 86
* ** * * * * ** * ** ** *** ** * * * * ** **
consensus_3219#0 GTGAAGACTGAACTCCACAGATATGTTGGCCGAGGGAAGGCAAGTCTACTTGCCGCCGCC 359
consensus_3219#1 GCTACAAGCCGAGTTGTCAGAA----TGGATGAGGAGAAGGAAGCCGACT---CGCCGCA 139
* * * * * **** *** **** * * *** * *** ******
consensus_3219#0 GCCGCCGTCCAAGCTTCCTCGTCTCTCCGGCACCGATCCAACCGACGGCGTGGTGACGAT 419
consensus_3219#1 GCCACCGTCCAAGCTGCCTCGCCTCTCCGGCGCTGACCCGAATGCCGGAGTGGTGACCAT 199
*** *********** ***** ********* * ** ** * * *** ******** **
consensus_3219#0 GGCAGCGCCGTCGCCGCTGGT---TCTTGGGCTGGGTCTCGGTCTGGGCGGCAGCGGCAG 476
consensus_3219#1 GGCAGCACCCCCGCCGCCGGTGGGTCTTGGGCTGGGGCTTGGACTCGGCGGCGACAGCCG 259
****** ** ****** *** ************ ** ** ** ****** * ** *
consensus_3219#0 CGACAGCAGTGGGAGCGACGCGGAAGCGTCTGCGGCCACCGTGCGGGAGGCGCGGCCGCC 536
consensus_3219#1 CGGC------GAGCGTGACGTGGAAGCGTCGGCGGCGGCGGCGCACAAGGCGA------- 306
** * * * * **** ********* ***** * * ** *****
consensus_3219#0 GTCGGCGCTGACGTTCATGCAGCGGCAGGAGCTGGAGCAGCAGGTGCTCATCTACCGCTA 596
consensus_3219#1 --CGGCGCTGACGTTCATGCAGCAGCAGGAGCTGGAGCACCAGGTGCTCATCTACCGCTA 364
********************* *************** ********************
consensus_3219#0 CTTCGCCGCCGGCGCGCCTGTGCCGGTTCACCTCGTGCTGCCCATATGGAAGAGCATCGC 656
consensus_3219#1 CTTCGCCGCGGGCGCGCCCGTGCCGGTGCACCTCGTGCTCCCCATCTGGAAGAGCGTCGC 424
********* ******** ******** *********** ***** ********* ****
consensus_3219#0 CGCCGCCTCCTCGTTCGGCCCGCAAAGCTTTCCCTCCCTGAC------GGGCCTGGGGAG 710
consensus_3219#1 GT---CCTCCTCCTTCGGCCCGCACCGCTTCCCTTCCCTGGCAGTGATGGGGTTGGGGAA 481
******* *********** **** ** ****** * *** ******
consensus_3219#0 CCTGTGCTTCGACTACAGGAGCAGCATGGAGCCGGAGCCGGGGCGGTGCCGGCGCACGGA 770
consensus_3219#1 CCTGTGCTTCGACTACCGGAGCAGCATGGAGCCGGACCCAGGGCGGTGCAGGCGCACGGA 541
**************** ******************* ** ********* **********
consensus_3219#0 CGGCAAGAAGTGGCGGTGCTCGCGCGACGTGGTGCCGGGGCACAAGTATTGCGAGCGGCA 830
consensus_3219#1 CGGCAAGAAGTGGCGGTGCTCGCGCGACGTGGTGCCGGGGCACAAGTACTGCGAGCGGCA 601
************************************************ ***********
consensus_3219#0 CGTCCACCGTGGCCACGGCCGTTCAAGAAAGCCTATGGAAGCCTCTGCAGCAGTCGCTCC 890
consensus_3219#1 CGTCCACCGCGGACGCGGCCGTTCAAGAAAGCCTGTGGAAGCCTCCGCGGCCGCCACCCC 661
********* ** * ******************* ********** ** ** * * * **
consensus_3219#0 CACATATCTCCCGGTCCGGCCGGCACTCCACACCGTCGCCACCCTCGCCACCAGCGCGCC 950
consensus_3219#1 GGCGAA-----CAACGGCGGCGGCGGTG-GCATCGTCTTCTCCCCCACCAGC-GTCCTCC 714
* * * * **** * ** **** * *** * *** * * * **
consensus_3219#0 ATCGCTGTCGCACCTCGGTTTCTCCTCCGCCAGCAAAGTGCTCCTCGCCCACACCACCAC 1010
consensus_3219#1 TCGCCCACGGCACCGCGCGCGCCACCTGACCAGTGACCAGACCGGCGCCTGTTTGTTTGT 774
* ***** ** * * **** * * * ****
consensus_3219#0 CGGCACCACGCGCGCTACTTGATCTCATTGTTATCTCCGAGGATTATGCCGGTGCACTGT 1070
consensus_3219#1 TTGTCTCG-GCGCATGGGAAAACCCAA-----ATCCGCAGGGATTATGTCA-TGTCCTGT 827
* * **** * * * *** * ******** * ** ****
consensus_3219#0 CTGTAACCTTTTTCTCGTAATCACGCCTCGGTTTGTTCCCAATGCA-TCGTCACGCATTG 1129
consensus_3219#1 AACTCTTTTTTTCCTCGCAACT---------TTTGAAGCCAAAACAATTCTCAC-CGT-- 875
* **** **** ** **** **** ** * **** * *
consensus_3219#0 CTAGTTTGACAGTTTGCTACCGCTGCCTCTGTGTGTGCCTGTGCGTGTGGCAGCCGAGGT 1189
consensus_3219#1 ------------------------------------------------------------
consensus_3219#0 GTTTTTGTTTGGTTGGGTGGTGGGAGGCGCGCCCCGGTGCGGTGGTGGGCGTGGCCCCCG 1249
consensus_3219#1 ------------------------------------------------------------
consensus_3219#0 GCTACCTAGTGCTGGTTCCTGCGTGTGCCTGTCGAACCTGTGGAGCGTGGTCGGAAGTAC 1309
consensus_3219#1 ------------------------------------------------------------
consensus_3219#0 GGTACGCACTGTCCGGTCTCATATGCCGGGGCAGAGGGGTTCGGTCCAGTGTGGTGCAGG 1369
consensus_3219#1 ------------------------------------------------------------
consensus_3219#0 CGTGCGGATTGGGATCACATGCAGTGGCTACTGCAACTTATGCAGTCCTAAAGACACCAT 1429
consensus_3219#1 ------------------------------------------------------------
consensus_3219#0 TGAATTATAAATTAACGTCCTAGATCTTTCCTTGATACTGTTCACAAATAACAGTGAAAA 1489
consensus_3219#1 ------------------------------------------------------------
consensus_3219#0 GTTCCTTCCTGTAGCAGGTACTATAGCAATTACTGTTTAAAATAACTGTAG 1540
consensus_3219#1 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||