cluster # 322

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Oryza sativa
cluster # 322 cluster # 322 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_322#0 length = 1474 sequences # 1

consensus_322#1 length = 447 sequences # 1

consensusID : consensus_322#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1474
fasta sequence

                              [AAAAAAAAAAAAAAAAGGAAACGGCGCCGACTCCTCTCCCTCGACCGCCGCCCCTCCTCCGACTTCTCTCACCCCGTGACCCGACGCCGCCGACTCCTCCCTCCTCCCTCATCGCGCCGAAACCCTAGACCCGCACCGCCCTCGACCGCCGCCCCTCCGCCGTCGTCGCATCCTGCCTCCTCCACACCATCACCGCCCCTCAATCCATCCTCGCGCCTCCCTCGACCGCCGCCCCTCTGCTGTCGTCGCATCCCGCCTCCTCCACACCATCGCCGCCCCCCAATCCACCCTCGCGACTCCCCACATCGACGCGTCGGCGCCCCCATCGTCACCGTCGAGGATTCGCCATCGACGCCCTCCTCTCTCTCGCACTCACCCCGTGACCCGACGCCGCCAACTATTCCCAAGGGAGTTGAAGGAGTTGTAGTTGTACCAATTTCTCTCCGTTATTTCCCAGCCGATCCCATCGCCCATGACCATGTTGCCCGCCTATCCTCCGTCGCTGCCTCCACGAGTCGCCTCACGTCTATCTCCTCCGCGCAACCATCAATCCCGCGTCGATCTCCTCCGCGTCCCCCTTCTGCGAGCCCCGGCCACCAACGACGGCGCCCTCTATTGCGGCAACCTCCTCCTCAGCCGGTGCAATGGGAAGTGTTCGGGCTGCCACACCATTAGGTGCAGTGAGACTGAATCTTGGAGATAAATTATTGAAGAACTGAACTCTAATTAAGAAGATATGCAGCGCAATTCCAGTAACCAAGGTTCAGATCAACTCAGTTGAGGGAGAGGCAGTATTGCCGCCGCCTGGCTGCGCTCCCTCGAAGTCACCTACTACCTCACCAGGTCGGTACTACATGCAGACCAAGGTTCAGATCAACTCAGTTGAGGGAGAGGCAGTATTGCCGCCGCCTGGCTGCGCTCCCTCAGCATCACCTACTACCCCGCCAGGTCGGTACTACATGCAGCGACGGCCGCCGTCTCCACTCCTAGCATGCATGCAGTTGTTCGCTTCGCCTGGATGAGTGATTTGAGTCTCATGGGTGGCGTTGTGCGCACCGGGGTGGTTGCTTTCAAGCATTGGGCACTGGCCATGCCGTCGTTGTTGCTGGTGGTGGCAGCGCAGGGGATGGTGCTCTACATGGCCTCCAACTTTCTGCTCCTACTTGCTTGGCCACTATCTATGATGAATTTGCCTGCGGCGTGTGGTACTGCAATAGGGGAGGATAAACCCATCGAGGCCATCTCAATTACTGGCATCCTTTGTGCTTCACCTAGGCAATGTACAGTTAGAGGCAATAGTAAAGGTCTGATTCTGCCTATAAATTCTAATCATTAGCCTACGGTCAGTGGAAGGGAAAATTTAAAACAGATTCTAAACTGAGACCTAACATTGATTTTATATTATGGACTTAAATCTGAAATTGATTTTGCTTGATGGATTTGAAATAAAAAAGTAGCACTGCATTTGTAATCA]

[+] EMBL AK109783             [AAAAAAAAAAAAAAAAGGAAACGGCGCCGACTCCTCTCCCTCGACCGCCGCCCCTCCTCCGACTTCTCTCACCCCGTGACCCGACGCCGCCGACTCCTCCCTCCTCCCTCATCGCGCCGAAACCCTAGACCCGCACCGCCCTCGACCGCCGCCCCTCCGCCGTCGTCGCATCCTGCCTCCTCCACACCATCACCGCCCCTCAATCCATCCTCGCGCCTCCCTCGACCGCCGCCCCTCTGCTGTCGTCGCATCCCGCCTCCTCCACACCATCGCCGCCCCCCAATCCACCCTCGCGACTCCCCACATCGACGCGTCGGCGCCCCCATCGTCACCGTCGAGGATTCGCCATCGACGCCCTCCTCTCTCTCGCACTCACCCCGTGACCCGACGCCGCCAACTATTCCCAAGGGAGTTGAAGGAGTTGTAGTTGTACCAATTTCTCTCCGTTATTTCCCAGCCGATCCCATCGCCCATGACCATGTTGCCCGCCTATCCTCCGTCGCTGCCTCCACGAGTCGCCTCACGTCTATCTCCTCCGCGCAACCATCAATCCCGCGTCGATCTCCTCCGCGTCCCCCTTCTGCGAGCCCCGGCCACCAACGACGGCGCCCTCTATTGCGGCAACCTCCTCCTCAGCCGGTGCAATGGGAAGTGTTCGGGCTGCCACACCATTAGGTGCAGTGAGACTGAATCTTGGAGATAAATTATTGAAGAACTGAACTCTAATTAAGAAGATATGCAGCGCAATTCCAGTAACCAAGGTTCAGATCAACTCAGTTGAGGGAGAGGCAGTATTGCCGCCGCCTGGCTGCGCTCCCTCGAAGTCACCTACTACCTCACCAGGTCGGTACTACATGCAGACCAAGGTTCAGATCAACTCAGTTGAGGGAGAGGCAGTATTGCCGCCGCCTGGCTGCGCTCCCTCAGCATCACCTACTACCCCGCCAGGTCGGTACTACATGCAGCGACGGCCGCCGTCTCCACTCCTAGCATGCATGCAGTTGTTCGCTTCGCCTGGATGAGTGATTTGAGTCTCATGGGTGGCGTTGTGCGCACCGGGGTGGTTGCTTTCAAGCATTGGGCACTGGCCATGCCGTCGTTGTTGCTGGTGGTGGCAGCGCAGGGGATGGTGCTCTACATGGCCTCCAACTTTCTGCTCCTACTTGCTTGGCCACTATCTATGATGAATTTGCCTGCGGCGTGTGGTACTGCAATAGGGGAGGATAAACCCATCGAGGCCATCTCAATTACTGGCATCCTTTGTGCTTCACCTAGGCAATGTACAGTTAGAGGCAATAGTAAAGGTCTGATTCTGCCTATAAATTCTAATCATTAGCCTACGGTCAGTGGAAGGGAAAATTTAAAACAGATTCTAAACTGAGACCTAACATTGATTTTATATTATGGACTTAAATCTGAAATTGATTTTGCTTGATGGATTTGAAATAAAAAAGTAGCACTGCATTTGTAATCA]




>consensus_322#0
AAAAAAAAAAAAAAAAGGAAACGGCGCCGACTCCTCTCCCTCGACCGCCGCCCCTCCTCC
GACTTCTCTCACCCCGTGACCCGACGCCGCCGACTCCTCCCTCCTCCCTCATCGCGCCGA
AACCCTAGACCCGCACCGCCCTCGACCGCCGCCCCTCCGCCGTCGTCGCATCCTGCCTCC
TCCACACCATCACCGCCCCTCAATCCATCCTCGCGCCTCCCTCGACCGCCGCCCCTCTGC
TGTCGTCGCATCCCGCCTCCTCCACACCATCGCCGCCCCCCAATCCACCCTCGCGACTCC
CCACATCGACGCGTCGGCGCCCCCATCGTCACCGTCGAGGATTCGCCATCGACGCCCTCC
TCTCTCTCGCACTCACCCCGTGACCCGACGCCGCCAACTATTCCCAAGGGAGTTGAAGGA
GTTGTAGTTGTACCAATTTCTCTCCGTTATTTCCCAGCCGATCCCATCGCCCATGACCAT
GTTGCCCGCCTATCCTCCGTCGCTGCCTCCACGAGTCGCCTCACGTCTATCTCCTCCGCG
CAACCATCAATCCCGCGTCGATCTCCTCCGCGTCCCCCTTCTGCGAGCCCCGGCCACCAA
CGACGGCGCCCTCTATTGCGGCAACCTCCTCCTCAGCCGGTGCAATGGGAAGTGTTCGGG
CTGCCACACCATTAGGTGCAGTGAGACTGAATCTTGGAGATAAATTATTGAAGAACTGAA
CTCTAATTAAGAAGATATGCAGCGCAATTCCAGTAACCAAGGTTCAGATCAACTCAGTTG
AGGGAGAGGCAGTATTGCCGCCGCCTGGCTGCGCTCCCTCGAAGTCACCTACTACCTCAC
CAGGTCGGTACTACATGCAGACCAAGGTTCAGATCAACTCAGTTGAGGGAGAGGCAGTAT
TGCCGCCGCCTGGCTGCGCTCCCTCAGCATCACCTACTACCCCGCCAGGTCGGTACTACA
TGCAGCGACGGCCGCCGTCTCCACTCCTAGCATGCATGCAGTTGTTCGCTTCGCCTGGAT
GAGTGATTTGAGTCTCATGGGTGGCGTTGTGCGCACCGGGGTGGTTGCTTTCAAGCATTG
GGCACTGGCCATGCCGTCGTTGTTGCTGGTGGTGGCAGCGCAGGGGATGGTGCTCTACAT
GGCCTCCAACTTTCTGCTCCTACTTGCTTGGCCACTATCTATGATGAATTTGCCTGCGGC
GTGTGGTACTGCAATAGGGGAGGATAAACCCATCGAGGCCATCTCAATTACTGGCATCCT
TTGTGCTTCACCTAGGCAATGTACAGTTAGAGGCAATAGTAAAGGTCTGATTCTGCCTAT
AAATTCTAATCATTAGCCTACGGTCAGTGGAAGGGAAAATTTAAAACAGATTCTAAACTG
AGACCTAACATTGATTTTATATTATGGACTTAAATCTGAAATTGATTTTGCTTGATGGAT
TTGAAATAAAAAAGTAGCACTGCATTTGTAATCA

consensusID : consensus_322#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 447
fasta sequence

                              [AGNCGACCCTTGCACGTCTCCACTCCTAGCATGCATGCAGTTGTTCGCTTCGCCTGGATGAGTGATTTGAGTCTCATGGGTGGCGTTGTGCGCACCGGGGTGGTTGCTTTCAAGCATTGGGCACTGGCCATGCCGTCGTTGTTGCTGGTGGTGGCAGCGCAGGGGATGGTGCTCTACATGGCCTCCAACTTTCTGCTCCTACTTGCTTGGCCACTATCTATGATGAATTTGCCTGCGGCGTGTGGTACTGCAATAGGGGAGGATAAACCCATCGAGGCCATCTCAATTACTGGCATCCTTTGTGCTTCACCTAGGCAATGTACAGTTAGAGGCAATAGTAAAGGTCTGATTCTGCCTATAAATTCTAATCATTAGCCTACGGTCAGTGGAAGGGAAAATTTAAAACAGATTCTAAACTGAGACCTAACATTGATTTTATATTATGGA]

[+] EMBL CB684789             [AGNCGACCCTTGCACGTCTCCACTCCTAGCATGCATGCAGTTGTTCGCTTCGCCTGGATGAGTGATTTGAGTCTCATGGGTGGCGTTGTGCGCACCGGGGTGGTTGCTTTCAAGCATTGGGCACTGGCCATGCCGTCGTTGTTGCTGGTGGTGGCAGCGCAGGGGATGGTGCTCTACATGGCCTCCAACTTTCTGCTCCTACTTGCTTGGCCACTATCTATGATGAATTTGCCTGCGGCGTGTGGTACTGCAATAGGGGAGGATAAACCCATCGAGGCCATCTCAATTACTGGCATCCTTTGTGCTTCACCTAGGCAATGTACAGTTAGAGGCAATAGTAAAGGTCTGATTCTGCCTATAAATTCTAATCATTAGCCTACGGTCAGTGGAAGGGAAAATTTAAAACAGATTCTAAACTGAGACCTAACATTGATTTTATATTATGGA]




>consensus_322#1
AGNCGACCCTTGCACGTCTCCACTCCTAGCATGCATGCAGTTGTTCGCTTCGCCTGGATG
AGTGATTTGAGTCTCATGGGTGGCGTTGTGCGCACCGGGGTGGTTGCTTTCAAGCATTGG
GCACTGGCCATGCCGTCGTTGTTGCTGGTGGTGGCAGCGCAGGGGATGGTGCTCTACATG
GCCTCCAACTTTCTGCTCCTACTTGCTTGGCCACTATCTATGATGAATTTGCCTGCGGCG
TGTGGTACTGCAATAGGGGAGGATAAACCCATCGAGGCCATCTCAATTACTGGCATCCTT
TGTGCTTCACCTAGGCAATGTACAGTTAGAGGCAATAGTAAAGGTCTGATTCTGCCTATA
AATTCTAATCATTAGCCTACGGTCAGTGGAAGGGAAAATTTAAAACAGATTCTAAACTGA
GACCTAACATTGATTTTATATTATGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_322#0      AAAAAAAAAAAAAAAAGGAAACGGCGCCGACTCCTCTCCCTCGACCGCCGCCCCTCCTCC 60
consensus_322#1      ------------------------------------------------------------
                                                                                 

consensus_322#0      GACTTCTCTCACCCCGTGACCCGACGCCGCCGACTCCTCCCTCCTCCCTCATCGCGCCGA 120
consensus_322#1      ------------------------------------------------------------
                                                                                 

consensus_322#0      AACCCTAGACCCGCACCGCCCTCGACCGCCGCCCCTCCGCCGTCGTCGCATCCTGCCTCC 180
consensus_322#1      ------------------------------------------------------------
                                                                                 

consensus_322#0      TCCACACCATCACCGCCCCTCAATCCATCCTCGCGCCTCCCTCGACCGCCGCCCCTCTGC 240
consensus_322#1      ------------------------------------------------------------
                                                                                 

consensus_322#0      TGTCGTCGCATCCCGCCTCCTCCACACCATCGCCGCCCCCCAATCCACCCTCGCGACTCC 300
consensus_322#1      ------------------------------------------------------------
                                                                                 

consensus_322#0      CCACATCGACGCGTCGGCGCCCCCATCGTCACCGTCGAGGATTCGCCATCGACGCCCTCC 360
consensus_322#1      ------------------------------------------------------------
                                                                                 

consensus_322#0      TCTCTCTCGCACTCACCCCGTGACCCGACGCCGCCAACTATTCCCAAGGGAGTTGAAGGA 420
consensus_322#1      ------------------------------------------------------------
                                                                                 

consensus_322#0      GTTGTAGTTGTACCAATTTCTCTCCGTTATTTCCCAGCCGATCCCATCGCCCATGACCAT 480
consensus_322#1      ------------------------------------------------------------
                                                                                 

consensus_322#0      GTTGCCCGCCTATCCTCCGTCGCTGCCTCCACGAGTCGCCTCACGTCTATCTCCTCCGCG 540
consensus_322#1      ------------------------------------------------------------
                                                                                 

consensus_322#0      CAACCATCAATCCCGCGTCGATCTCCTCCGCGTCCCCCTTCTGCGAGCCCCGGCCACCAA 600
consensus_322#1      ------------------------------------------------------------
                                                                                 

consensus_322#0      CGACGGCGCCCTCTATTGCGGCAACCTCCTCCTCAGCCGGTGCAATGGGAAGTGTTCGGG 660
consensus_322#1      ------------------------------------------------------------
                                                                                 

consensus_322#0      CTGCCACACCATTAGGTGCAGTGAGACTGAATCTTGGAGATAAATTATTGAAGAACTGAA 720
consensus_322#1      ------------------------------------------------------------
                                                                                 

consensus_322#0      CTCTAATTAAGAAGATATGCAGCGCAATTCCAGTAACCAAGGTTCAGATCAACTCAGTTG 780
consensus_322#1      ------------------------------------------------------------
                                                                                 

consensus_322#0      AGGGAGAGGCAGTATTGCCGCCGCCTGGCTGCGCTCCCTCGAAGTCACCTACTACCTCAC 840
consensus_322#1      ------------------------------------------------------------
                                                                                 

consensus_322#0      CAGGTCGGTACTACATGCAGACCAAGGTTCAGATCAACTCAGTTGAGGGAGAGGCAGTAT 900
consensus_322#1      ------------------------------------------------------------
                                                                                 

consensus_322#0      TGCCGCCGCCTGGCTGCGCTCCCTCAGCATCACCTACTACCCCGCCAGGTCGGTACTACA 960
consensus_322#1      ------------------------------------------------------------
                                                                                 

consensus_322#0      TGCAGCGACGGCCGC-CGTCTCCACTCCTAGCATGCATGCAGTTGTTCGCTTCGCCTGGA 1019
consensus_322#1      --AGNCGACCCTTGCACGTCTCCACTCCTAGCATGCATGCAGTTGTTCGCTTCGCCTGGA 58
                          ****    ** ********************************************

consensus_322#0      TGAGTGATTTGAGTCTCATGGGTGGCGTTGTGCGCACCGGGGTGGTTGCTTTCAAGCATT 1079
consensus_322#1      TGAGTGATTTGAGTCTCATGGGTGGCGTTGTGCGCACCGGGGTGGTTGCTTTCAAGCATT 118
                     ************************************************************

consensus_322#0      GGGCACTGGCCATGCCGTCGTTGTTGCTGGTGGTGGCAGCGCAGGGGATGGTGCTCTACA 1139
consensus_322#1      GGGCACTGGCCATGCCGTCGTTGTTGCTGGTGGTGGCAGCGCAGGGGATGGTGCTCTACA 178
                     ************************************************************

consensus_322#0      TGGCCTCCAACTTTCTGCTCCTACTTGCTTGGCCACTATCTATGATGAATTTGCCTGCGG 1199
consensus_322#1      TGGCCTCCAACTTTCTGCTCCTACTTGCTTGGCCACTATCTATGATGAATTTGCCTGCGG 238
                     ************************************************************

consensus_322#0      CGTGTGGTACTGCAATAGGGGAGGATAAACCCATCGAGGCCATCTCAATTACTGGCATCC 1259
consensus_322#1      CGTGTGGTACTGCAATAGGGGAGGATAAACCCATCGAGGCCATCTCAATTACTGGCATCC 298
                     ************************************************************

consensus_322#0      TTTGTGCTTCACCTAGGCAATGTACAGTTAGAGGCAATAGTAAAGGTCTGATTCTGCCTA 1319
consensus_322#1      TTTGTGCTTCACCTAGGCAATGTACAGTTAGAGGCAATAGTAAAGGTCTGATTCTGCCTA 358
                     ************************************************************

consensus_322#0      TAAATTCTAATCATTAGCCTACGGTCAGTGGAAGGGAAAATTTAAAACAGATTCTAAACT 1379
consensus_322#1      TAAATTCTAATCATTAGCCTACGGTCAGTGGAAGGGAAAATTTAAAACAGATTCTAAACT 418
                     ************************************************************

consensus_322#0      GAGACCTAACATTGATTTTATATTATGGACTTAAATCTGAAATTGATTTTGCTTGATGGA 1439
consensus_322#1      GAGACCTAACATTGATTTTATATTATGGA------------------------------- 447
                     *****************************                               

consensus_322#0      TTTGAAATAAAAAAGTAGCACTGCATTTGTAATCA 1474
consensus_322#1      -----------------------------------