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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3225#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence
[CTCAAGCCCCTCATTCTCTCACCCCTCTCTCTGTAACTACCGCCGCACCTCCTCTTCCTCCTCCTCCCCTTAACCCTCCATGCTGCAAGATGACGGCGATGGCGGCGTGGCCAGATCCGGCTCCGCCCCTTAACCTTCCTCTCGCCCCTTCATATCANCCATTGGAGCTCGGGGGTGGCCAGATCCGGCTCCGCCCCTCCCCACCAGCACATGGGAACGGCCAAATCCGGTGCTCGGCAAGCGGTCGGATCCAGCGTGGCCCCTCCTCCTCTCTGTCCCTTCCCATTGGTGCTCGGGGGTAGCCGGATTCGGTGCCCCCCACCACCCACCCACCAAGCGAGGTGCAGATGGACTTTATATCTTTTTTCTGATCTGTTCATCTTGTTCTTTACCTTTTATGCATATNAATAATTCGTGTAATTGGAGTGATGGAATTCTTCATTTGTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
[+] EMBL CA756022 [CTCAAGCCCCTCATTCTCTCACCCCTCTCTCTGTAACTACCGCCGCACCTCCTCTTCCTCCTCCTCCCCTTAACCCTCCATGCTGCAAGATGACGGCGATGGCGGCGTGGCCAGATCCGGCTCCGCCCCTTAACCTTCCTCTCGCCCCTTCATATCANCCATTGGAGCTCGGGGGTGGCCAGATCCGGCTCCGCCCCTCCCCACCAGCACATGGGAACGGCCAAATCCGGTGCTCGGCAAGCGGTCGGATCCAGCGTGGCCCCTCCTCCTCTCTGTCCCTTCCCATTGGTGCTCGGGGGTAGCCGGATTCGGTGCCCCCCACCACCCACCCACCAAGCGAGGTGCAGATGGACTTTATATCTTTTTTCTGATCTGTTCATCTTGTTCTTTACCTTTTATGCATATNAATAATTCGTGTAATTGGAGTGATGGAATTCTTCATTTGTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
consensusID : consensus_3225#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence
[ANNATTTAANACNGGAAAGGNNGGACCAGGTAAAGNNANNGTTGAAATAAACCTNAANAAAGGGAACNAAAAGNGGGAGNTCCAACCGGGGGGGGGCCGGTTNAGGAATNAGGGGAATCCCCCGGGGGGGCNNGGATTGGNAAGAAGTCAATTTTTNAACCCTTTTTTNGGNAANAACNGCGGAACTTNNTTTTTCTTCTTCNTCCCCCNAAAACNTCCATGCGGCAAAGATGACGGCGATGGNGGCGTGGCCAGATCCGGNTCCGGCCCNTTAACNTTTCCTNTCGCCCCTTCATATCATCCATTGGAGCTCGGGGGTGGCCAGATCCGGNTCCGCCCCTCCCCACCAGCACATGGGAACGGCCAAATCCGGTGCTCGGCAAGCGGTCGGATCCAGCGTGGCCCCTCCTCCTCTCTGTCCCTTCCCATTGGTGCTCGGGGGTAGCCGGATTCGGTGCCCCCCACCACCCACCCACCAAGCGAGGTGCAGATGGACTTTATATCTTTTTTCTGATCTGTTCATCTTGTTCTTTACCTTTTATGCATATAAATAATTCGTGTAATTGGAGTGATGGAATTCTTC]
[-] EMBL BE229165 [ANNATTTAANACNGGAAAGGNNGGACCAGGTAAAGNNANNGTTGAAATAAACCTNAANAAAGGGAACNAAAAGNGGGAGNTCCAACCGGGGGGGGGCCGGTTNAGGAATNAGGGGAATCCCCCGGGGGGGCNNGGATTGGNAAGAAGTCAATTTTTNAACCCTTTTTTNGGNAANAACNGCGGAACTTNNTTTTTCTTCTTCNTCCCCCNAAAACNTCCATGCGGCAAAGATGACGGCGATGGNGGCGTGGCCAGATCCGGNTCCGGCCCNTTAACNTTTCCTNTCGCCCCTTCATATCATCCATTGGAGCTCGGGGGTGGCCAGATCCGGNTCCGCCCCTCCCCACCAGCACATGGGAACGGCCAAATCCGGTGCTCGGCAAGCGGTCGGATCCAGCGTGGCCCCTCCTCCTCTCTGTCCCTTCCCATTGGTGCTCGGGGGTAGCCGGATTCGGTGCCCCCCACCACCCACCCACCAAGCGAGGTGCAGATGGACTTTATATCTTTTTTCTGATCTGTTCATCTTGTTCTTTACCTTTTATGCATATAAATAATTCGTGTAATTGGAGTGATGGAATTCTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3225#0 ------------------------------------------------------------
consensus_3225#1 ANNATTTAANACNGGAAAGGNNGGACCAGGTAAAGNNANNGTTGAAATAAACCTNAANAA 60
consensus_3225#0 ------------------------------------------------------------
consensus_3225#1 AGGGAACNAAAAGNGGGAGNTCCAACCGGGGGGGGGCCGGTTNAGGAATNAGGGGAATCC 120
consensus_3225#0 ------------------CTCAAGCCCCTCATTCTCTCACCCCTCTCTCTGTAACTACCG 42
consensus_3225#1 CCCGGGGGGGCNNGGATTGGNAAGAAGTCAATTTTTNAACCCTTTTTTNGGNAANAACNG 180
*** *** * **** * * * * ** ** *
consensus_3225#0 CCGCACCTCCTCTTCCTCCTCCT--CCCCTTAACCCTCCATGCTGCAA-GATGACGGCGA 99
consensus_3225#1 CGGAACTTNNTTTTTCTTCTTCNTCCCCCNAAAACNTCCATGCGGCAAAGATGACGGCGA 240
* * ** * * ** ** ** * **** ** * ******* **** ***********
consensus_3225#0 TGGCGGCGTGGCCAGATCCGGCTCCG-CCCCTTAACCTT-CCTCTCGCCCCTTCATATCA 157
consensus_3225#1 TGGNGGCGTGGCCAGATCCGGNTCCGGCCCNTTAACNTTTCCTNTCGCCCCTTCATATCA 300
*** ***************** **** *** ***** ** *** ****************
consensus_3225#0 NCCATTGGAGCTCGGGGGTGGCCAGATCCGGCTCCGCCCCTCCCCACCAGCACATGGGAA 217
consensus_3225#1 TCCATTGGAGCTCGGGGGTGGCCAGATCCGGNTCCGCCCCTCCCCACCAGCACATGGGAA 360
****************************** ****************************
consensus_3225#0 CGGCCAAATCCGGTGCTCGGCAAGCGGTCGGATCCAGCGTGGCCCCTCCTCCTCTCTGTC 277
consensus_3225#1 CGGCCAAATCCGGTGCTCGGCAAGCGGTCGGATCCAGCGTGGCCCCTCCTCCTCTCTGTC 420
************************************************************
consensus_3225#0 CCTTCCCATTGGTGCTCGGGGGTAGCCGGATTCGGTGCCCCCCACCACCCACCCACCAAG 337
consensus_3225#1 CCTTCCCATTGGTGCTCGGGGGTAGCCGGATTCGGTGCCCCCCACCACCCACCCACCAAG 480
************************************************************
consensus_3225#0 CGAGGTGCAGATGGACTTTATATCTTTTTTCTGATCTGTTCATCTTGTTCTTTACCTTTT 397
consensus_3225#1 CGAGGTGCAGATGGACTTTATATCTTTTTTCTGATCTGTTCATCTTGTTCTTTACCTTTT 540
************************************************************
consensus_3225#0 ATGCATATNAATAATTCGTGTAATTGGAGTGATGGAATTCTTCATTTGTACCNNNNNNNN 457
consensus_3225#1 ATGCATATAAATAATTCGTGTAATTGGAGTGATGGAATTCTTC----------------- 583
******** **********************************
consensus_3225#0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 517
consensus_3225#1 ------------------------------------------------------------
consensus_3225#0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 577
consensus_3225#1 ------------------------------------------------------------
consensus_3225#0 NNNNNNNNNNNNNNNNNNN 596
consensus_3225#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||