cluster # 3227

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Oryza sativa
cluster # 3227 cluster # 3227 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3227#0 length = 719 sequences # 1

consensus_3227#1 length = 417 sequences # 1

consensusID : consensus_3227#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 719
fasta sequence

                              [TCTCTCATTTTAATTTGTTAACCGATGTGTACTTTTAATATATTCGTGCGCTGATTGTGTGTTGCATAGGGTTTAAGCTATCTGAAAAGGGGGGATTTTTGGGGTAATAGAAACACCAAATTTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATCAAAGAGTATCATACCTATTAGTCTTAATTTAAGGAATCTTTTGTATATATCTCCTCAATGACAATAAAAATATCTAACTAAATCGTACTATCAAAGAGGTATATATAGTGCCATCAGTGCATCATATTCTATCTTGTATGAAGCTGTTAAAAATTAATGAAGTAACAGAAACACCAAATTTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATAAAAGAGTATCATACCTTTTAGTCTTAATTTAAGGAATCTTCTGCATATATCTCCTCAATGACAATAAAAACGTTCTATCACACCAAAATTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATAAAAGAGTATCGTACCTTTTAGTCTTAATTTAAGGAATCTTCTGCATATATCTCCTCAATGACAATAAAAATATCTAATTAAATCGTACTTTCAAAGAGGTATTCATACCGCCATCAATGCATTATATTCCATCTTATATTAAGCTGTCAAAAATTAATGAAGTAGCAGTACGTACCCTAGCTCCAGGGCCAGCACATNCCAATGGTGG]

[+] EMBL CA766175             [TCTCTCATTTTAATTTGTTAACCGATGTGTACTTTTAATATATTCGTGCGCTGATTGTGTGTTGCATAGGGTTTAAGCTATCTGAAAAGGGGGGATTTTTGGGGTAATAGAAACACCAAATTTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATCAAAGAGTATCATACCTATTAGTCTTAATTTAAGGAATCTTTTGTATATATCTCCTCAATGACAATAAAAATATCTAACTAAATCGTACTATCAAAGAGGTATATATAGTGCCATCAGTGCATCATATTCTATCTTGTATGAAGCTGTTAAAAATTAATGAAGTAACAGAAACACCAAATTTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATAAAAGAGTATCATACCTTTTAGTCTTAATTTAAGGAATCTTCTGCATATATCTCCTCAATGACAATAAAAACGTTCTATCACACCAAAATTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATAAAAGAGTATCGTACCTTTTAGTCTTAATTTAAGGAATCTTCTGCATATATCTCCTCAATGACAATAAAAATATCTAATTAAATCGTACTTTCAAAGAGGTATTCATACCGCCATCAATGCATTATATTCCATCTTATATTAAGCTGTCAAAAATTAATGAAGTAGCAGTACGTACCCTAGCTCCAGGGCCAGCACATNCCAATGGTGG]




>consensus_3227#0
TCTCTCATTTTAATTTGTTAACCGATGTGTACTTTTAATATATTCGTGCGCTGATTGTGT
GTTGCATAGGGTTTAAGCTATCTGAAAAGGGGGGATTTTTGGGGTAATAGAAACACCAAA
TTTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATCAAAGAGTATCATACCTAT
TAGTCTTAATTTAAGGAATCTTTTGTATATATCTCCTCAATGACAATAAAAATATCTAAC
TAAATCGTACTATCAAAGAGGTATATATAGTGCCATCAGTGCATCATATTCTATCTTGTA
TGAAGCTGTTAAAAATTAATGAAGTAACAGAAACACCAAATTTTGGTGTGATAGAACGTT
TTTATGGTTCTTGAGGGATATAAAAGAGTATCATACCTTTTAGTCTTAATTTAAGGAATC
TTCTGCATATATCTCCTCAATGACAATAAAAACGTTCTATCACACCAAAATTTGGTGTGA
TAGAACGTTTTTATGGTTCTTGAGGGATATAAAAGAGTATCGTACCTTTTAGTCTTAATT
TAAGGAATCTTCTGCATATATCTCCTCAATGACAATAAAAATATCTAATTAAATCGTACT
TTCAAAGAGGTATTCATACCGCCATCAATGCATTATATTCCATCTTATATTAAGCTGTCA
AAAATTAATGAAGTAGCAGTACGTACCCTAGCTCCAGGGCCAGCACATNCCAATGGTGG

consensusID : consensus_3227#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 417
fasta sequence

                              [CAAGGGGGGATTTTTGGGGTAATAGAAACACCAAATTTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATCAAAGAGTATCATACCTATTAGTCTTAATTTAAGGAATCTTTTGTATATATCTCCTCAATGACAATAAAAATATCTAACTAAATCGTACTATCAAAGAGGTATATATATGTGCCATCAGTGCATCATATTCTATCTTGTATGAAGCTGTTAAAAATTAATGAAGTAACAGAAACACCAAATTTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATAAAAGAGTATCATACCTTTTAGTCTTAATTTAAGGAATCTTCTGCATATATCTCCTCAATGACAATAAAAATATCTAATTAAATCGTACTTTCAAAGAGGTATTCATACCGCCATCAATG]

[+] EMBL CB096752             [CAAGGGGGGATTTTTGGGGTAATAGAAACACCAAATTTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATCAAAGAGTATCATACCTATTAGTCTTAATTTAAGGAATCTTTTGTATATATCTCCTCAATGACAATAAAAATATCTAACTAAATCGTACTATCAAAGAGGTATATATATGTGCCATCAGTGCATCATATTCTATCTTGTATGAAGCTGTTAAAAATTAATGAAGTAACAGAAACACCAAATTTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATAAAAGAGTATCATACCTTTTAGTCTTAATTTAAGGAATCTTCTGCATATATCTCCTCAATGACAATAAAAATATCTAATTAAATCGTACTTTCAAAGAGGTATTCATACCGCCATCAATG]




>consensus_3227#1
CAAGGGGGGATTTTTGGGGTAATAGAAACACCAAATTTTGGTGTGATAGAACGTTTTTAT
GGTTCTTGAGGGATATCAAAGAGTATCATACCTATTAGTCTTAATTTAAGGAATCTTTTG
TATATATCTCCTCAATGACAATAAAAATATCTAACTAAATCGTACTATCAAAGAGGTATA
TATATGTGCCATCAGTGCATCATATTCTATCTTGTATGAAGCTGTTAAAAATTAATGAAG
TAACAGAAACACCAAATTTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATAAA
AGAGTATCATACCTTTTAGTCTTAATTTAAGGAATCTTCTGCATATATCTCCTCAATGAC
AATAAAAATATCTAATTAAATCGTACTTTCAAAGAGGTATTCATACCGCCATCAATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3227#0      TCTCTCATTTTAATTTGTTAACCGATGTGTACTTTTAATATATTCGTGCGCTGATTGTGT 60
consensus_3227#1      ------------------------------------------------------------
                                                                                  

consensus_3227#0      GTTGCATAGGGTTTAAGCTATCTGAAAAGGGGGGATTTTTGGGGTAATAGAAACACCAAA 120
consensus_3227#1      -------------------------CAAGGGGGGATTTTTGGGGTAATAGAAACACCAAA 35
                                                **********************************

consensus_3227#0      TTTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATCAAAGAGTATCATACCTAT 180
consensus_3227#1      TTTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATCAAAGAGTATCATACCTAT 95
                      ************************************************************

consensus_3227#0      TAGTCTTAATTTAAGGAATCTTTTGTATATATCTCCTCAATGACAATAAAAATATCTAAC 240
consensus_3227#1      TAGTCTTAATTTAAGGAATCTTTTGTATATATCTCCTCAATGACAATAAAAATATCTAAC 155
                      ************************************************************

consensus_3227#0      TAAATCGTACTATCAAAGAGGTATATATA-GTGCCATCAGTGCATCATATTCTATCTTGT 299
consensus_3227#1      TAAATCGTACTATCAAAGAGGTATATATATGTGCCATCAGTGCATCATATTCTATCTTGT 215
                      ***************************** ******************************

consensus_3227#0      ATGAAGCTGTTAAAAATTAATGAAGTAACAGAAACACCAAATTTTGGTGTGATAGAACGT 359
consensus_3227#1      ATGAAGCTGTTAAAAATTAATGAAGTAACAGAAACACCAAATTTTGGTGTGATAGAACGT 275
                      ************************************************************

consensus_3227#0      TTTTATGGTTCTTGAGGGATATAAAAGAGTATCATACCTTTTAGTCTTAATTTAAGGAAT 419
consensus_3227#1      TTTTATGGTTCTTGAGGGATATAAAAGAGTATCATACCTTTTAGTCTTAATTTAAGGAAT 335
                      ************************************************************

consensus_3227#0      CTTCTGCATATATCTCCTCAATGACAATAAAAACGTTCTATCACACCAAAATTTGGTGTG 479
consensus_3227#1      CTTCTGCATATATCTCCTCAATGACAATAAAAATATCTAATTAAATCGTACTTT----CA 391
                      *********************************  *   ** * * *  * ***      

consensus_3227#0      ATAGAACGTTTTTATGGTTCTTGAGGGATATAAAAGAGTATCGTACCTTTTAGTCTTAAT 539
consensus_3227#1      AAGAGGTATTCATACCGCCATCAATG---------------------------------- 417
                      *       **  **  *   *  * *                                  

consensus_3227#0      TTAAGGAATCTTCTGCATATATCTCCTCAATGACAATAAAAATATCTAATTAAATCGTAC 599
consensus_3227#1      ------------------------------------------------------------
                                                                                  

consensus_3227#0      TTTCAAAGAGGTATTCATACCGCCATCAATGCATTATATTCCATCTTATATTAAGCTGTC 659
consensus_3227#1      ------------------------------------------------------------
                                                                                  

consensus_3227#0      AAAAATTAATGAAGTAGCAGTACGTACCCTAGCTCCAGGGCCAGCACATNCCAATGGTGG 719
consensus_3227#1      ------------------------------------------------------------