cluster # 3237

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Oryza sativa
cluster # 3237 cluster # 3237 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3237#0 length = 173 sequences # 1

consensus_3237#1 length = 149 sequences # 1

consensusID : consensus_3237#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 173
fasta sequence

                              [TGACTGGACTGAGGAGTGAAGGGGCTATGGGAAACATGGCTGGATGAGTTGTACTCCCTCCATCCCAAAATATAAATATTTTTAGCATAGTGTTAAGTTACACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCC]

[+] EMBL CF318213             [TGACTGGACTGAGGAGTGAAGGGGCTATGGGAAACATGGCTGGATGAGTTGTACTCCCTCCATCCCAAAATATAAATATTTTTAGCATAGTGTTAAGTTACACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCC]




>consensus_3237#0
TGACTGGACTGAGGAGTGAAGGGGCTATGGGAAACATGGCTGGATGAGTTGTACTCCCTC
CATCCCAAAATATAAATATTTTTAGCATAGTGTTAAGTTACACTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCC

consensusID : consensus_3237#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 149
fasta sequence

                              [ATGGATTGAGGAGTAAAAAGGGGGTCAGGGGAAACAAGGGTGGATGAGTTGTACTCCCTCCATCCCAAAAAATAAATATTTTTAGCAAAGGGTTAAGTTCCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF318212             [ATGGATTGAGGAGTAAAAAGGGGGTCAGGGGAAACAAGGGTGGATGAGTTGTACTCCCTCCATCCCAAAAAATAAATATTTTTAGCAAAGGGTTAAGTTCCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_3237#1
ATGGATTGAGGAGTAAAAAGGGGGTCAGGGGAAACAAGGGTGGATGAGTTGTACTCCCTC
CATCCCAAAAAATAAATATTTTTAGCAAAGGGTTAAGTTCCCCTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3237#0      TGACTGGACTGAGGAGTGAA---GGGGCTATGGGAAACATGGCTGGATGAGTTGTACTCC 57
consensus_3237#1      ---ATGGATTGAGGAGTAAAAAGGGGGTCAGGGGAAACAAGGGTGGATGAGTTGTACTCC 57
                          **** ******** **   ****  * ******** ** *****************

consensus_3237#0      CTCCATCCCAAAATATAAATATTTTTAGCATAGTGTTAAGTTACACTAAAAAAAAAAAAA 117
consensus_3237#1      CTCCATCCCAAAAAATAAATATTTTTAGCAAAGGGTTAAGTTCCCCTAAAAAAAAAAAAA 117
                      ************* **************** ** ******** * ***************

consensus_3237#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCC 173
consensus_3237#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------ 149
                      ********************************