cluster # 3238

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3238 cluster # 3238 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3238#0 length = 742 sequences # 1

consensus_3238#1 length = 295 sequences # 1

consensusID : consensus_3238#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 742
fasta sequence

                              [CGATTCGCCCCCCTCCTCACTCACTGTCGTGCTTGCCTATCGTCTCCGCTCCCGGTGCGCAGCCGGCGAGCCGCAGCCGCCGCCCCCCTCTCCGCGCCGGCGGCCTCCTCCGCCCTCTCTGCCGCCAGTCCCCGGCCGATCCCATCGCCAGTCGGCGGGCGGTCTCCCCGCGGGTGGGGTGGGGGCGGGACGGACGATGAAGCCGGTGGTGGGGATCGTGGTGTCGAACAAGATGCAGAAGTCGGTGGTGGTGGCCGTCGACCGCCTCTTCCACCACAAGATGTACAACCGCTACGTCAAGCGCACCTCCAAGTTCATGGCGCACGATGAGACCGAGGACTGTAACATCGGCGACCGGGTTAAGCTTGATCCTTCTAGGCCCTTGAGCAAAAGGAAGCACTGGGTTGTTGCCGAGATTCTTCGTAGAGCTAAGGTGTATTCTCCATCAGCTGCTGCAGCAGCAGTTTCTGCTCAACCTGGTGCCACAGTTCAACAGGCAGAAGCTGCTAGCAAATCATAAACATAGACTCCTCTTCTGCAATAAATGGACACTTTTTCGGGATTTTCTTTTATGTTGTGTAACTGTAGTATCATCTTTGTGGCTCCCTTCAAATGCACTCGTGTTTTTGAACCATGTGAATGGTGGTTATCAACTCACTGAGGGTGCATCTTCAAATACTTCGAAATTCATGGATGCAACAGACCATATCCATATGTAGAACGGAATCTTCTATTATGAATT]

[+] EMBL AK070753             [CGATTCGCCCCCCTCCTCACTCACTGTCGTGCTTGCCTATCGTCTCCGCTCCCGGTGCGCAGCCGGCGAGCCGCAGCCGCCGCCCCCCTCTCCGCGCCGGCGGCCTCCTCCGCCCTCTCTGCCGCCAGTCCCCGGCCGATCCCATCGCCAGTCGGCGGGCGGTCTCCCCGCGGGTGGGGTGGGGGCGGGACGGACGATGAAGCCGGTGGTGGGGATCGTGGTGTCGAACAAGATGCAGAAGTCGGTGGTGGTGGCCGTCGACCGCCTCTTCCACCACAAGATGTACAACCGCTACGTCAAGCGCACCTCCAAGTTCATGGCGCACGATGAGACCGAGGACTGTAACATCGGCGACCGGGTTAAGCTTGATCCTTCTAGGCCCTTGAGCAAAAGGAAGCACTGGGTTGTTGCCGAGATTCTTCGTAGAGCTAAGGTGTATTCTCCATCAGCTGCTGCAGCAGCAGTTTCTGCTCAACCTGGTGCCACAGTTCAACAGGCAGAAGCTGCTAGCAAATCATAAACATAGACTCCTCTTCTGCAATAAATGGACACTTTTTCGGGATTTTCTTTTATGTTGTGTAACTGTAGTATCATCTTTGTGGCTCCCTTCAAATGCACTCGTGTTTTTGAACCATGTGAATGGTGGTTATCAACTCACTGAGGGTGCATCTTCAAATACTTCGAAATTCATGGATGCAACAGACCATATCCATATGTAGAACGGAATCTTCTATTATGAATT]




>consensus_3238#0
CGATTCGCCCCCCTCCTCACTCACTGTCGTGCTTGCCTATCGTCTCCGCTCCCGGTGCGC
AGCCGGCGAGCCGCAGCCGCCGCCCCCCTCTCCGCGCCGGCGGCCTCCTCCGCCCTCTCT
GCCGCCAGTCCCCGGCCGATCCCATCGCCAGTCGGCGGGCGGTCTCCCCGCGGGTGGGGT
GGGGGCGGGACGGACGATGAAGCCGGTGGTGGGGATCGTGGTGTCGAACAAGATGCAGAA
GTCGGTGGTGGTGGCCGTCGACCGCCTCTTCCACCACAAGATGTACAACCGCTACGTCAA
GCGCACCTCCAAGTTCATGGCGCACGATGAGACCGAGGACTGTAACATCGGCGACCGGGT
TAAGCTTGATCCTTCTAGGCCCTTGAGCAAAAGGAAGCACTGGGTTGTTGCCGAGATTCT
TCGTAGAGCTAAGGTGTATTCTCCATCAGCTGCTGCAGCAGCAGTTTCTGCTCAACCTGG
TGCCACAGTTCAACAGGCAGAAGCTGCTAGCAAATCATAAACATAGACTCCTCTTCTGCA
ATAAATGGACACTTTTTCGGGATTTTCTTTTATGTTGTGTAACTGTAGTATCATCTTTGT
GGCTCCCTTCAAATGCACTCGTGTTTTTGAACCATGTGAATGGTGGTTATCAACTCACTG
AGGGTGCATCTTCAAATACTTCGAAATTCATGGATGCAACAGACCATATCCATATGTAGA
ACGGAATCTTCTATTATGAATT

consensusID : consensus_3238#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 295
fasta sequence

                              [TAACATCGGCGACCGGGTTAAGCTTGATCCTTCTAGGCCCTTGAGCAAAAGGAAGCACTGGGTTGTTGCCGAGATTCTTCGTAGAGCTAAGGTGTATTCTCCATCAGCTGCTGCAGCAGCAGTTTCTGCTCAACCTGTTTTCACAGTTCAACAGGCAGAAGCTGCTAGCAAATCATAAACATAGACTCCTCTTCTGCAATAAATGGACACTTTTTCGGGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF318250             [TAACATCGGCGACCGGGTTAAGCTTGATCCTTCTAGGCCCTTGAGCAAAAGGAAGCACTGGGTTGTTGCCGAGATTCTTCGTAGAGCTAAGGTGTATTCTCCATCAGCTGCTGCAGCAGCAGTTTCTGCTCAACCTGTTTTCACAGTTCAACAGGCAGAAGCTGCTAGCAAATCATAAACATAGACTCCTCTTCTGCAATAAATGGACACTTTTTCGGGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_3238#1
TAACATCGGCGACCGGGTTAAGCTTGATCCTTCTAGGCCCTTGAGCAAAAGGAAGCACTG
GGTTGTTGCCGAGATTCTTCGTAGAGCTAAGGTGTATTCTCCATCAGCTGCTGCAGCAGC
AGTTTCTGCTCAACCTGTTTTCACAGTTCAACAGGCAGAAGCTGCTAGCAAATCATAAAC
ATAGACTCCTCTTCTGCAATAAATGGACACTTTTTCGGGATTAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3238#0      CGATTCGCCCCCCTCCTCACTCACTGTCGTGCTTGCCTATCGTCTCCGCTCCCGGTGCGC 60
consensus_3238#1      ------------------------------------------------------------
                                                                                  

consensus_3238#0      AGCCGGCGAGCCGCAGCCGCCGCCCCCCTCTCCGCGCCGGCGGCCTCCTCCGCCCTCTCT 120
consensus_3238#1      ------------------------------------------------------------
                                                                                  

consensus_3238#0      GCCGCCAGTCCCCGGCCGATCCCATCGCCAGTCGGCGGGCGGTCTCCCCGCGGGTGGGGT 180
consensus_3238#1      ------------------------------------------------------------
                                                                                  

consensus_3238#0      GGGGGCGGGACGGACGATGAAGCCGGTGGTGGGGATCGTGGTGTCGAACAAGATGCAGAA 240
consensus_3238#1      ------------------------------------------------------------
                                                                                  

consensus_3238#0      GTCGGTGGTGGTGGCCGTCGACCGCCTCTTCCACCACAAGATGTACAACCGCTACGTCAA 300
consensus_3238#1      ------------------------------------------------------------
                                                                                  

consensus_3238#0      GCGCACCTCCAAGTTCATGGCGCACGATGAGACCGAGGACTGTAACATCGGCGACCGGGT 360
consensus_3238#1      ------------------------------------------TAACATCGGCGACCGGGT 18
                                                                ******************

consensus_3238#0      TAAGCTTGATCCTTCTAGGCCCTTGAGCAAAAGGAAGCACTGGGTTGTTGCCGAGATTCT 420
consensus_3238#1      TAAGCTTGATCCTTCTAGGCCCTTGAGCAAAAGGAAGCACTGGGTTGTTGCCGAGATTCT 78
                      ************************************************************

consensus_3238#0      TCGTAGAGCTAAGGTGTATTCTCCATCAGCTGCTGCAGCAGCAGTTTCTGCTCAACCTGG 480
consensus_3238#1      TCGTAGAGCTAAGGTGTATTCTCCATCAGCTGCTGCAGCAGCAGTTTCTGCTCAACCTGT 138
                      *********************************************************** 

consensus_3238#0      TGCCACAGTTCAACAGGCAGAAGCTGCTAGCAAATCATAAACATAGACTCCTCTTCTGCA 540
consensus_3238#1      TTTCACAGTTCAACAGGCAGAAGCTGCTAGCAAATCATAAACATAGACTCCTCTTCTGCA 198
                      *  *********************************************************

consensus_3238#0      ATAAATGGACACTTTTTCGGGATTTTCTTTTATGTTGTGTAACTGTAGTATCATCTTTGT 600
consensus_3238#1      ATAAATGGACACTTTTTCGGGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 258
                      ************************       *        **    *  *  *       

consensus_3238#0      GGCTCCCTTCAAATGCACTCGTGTTTTTGAACCATGTGAATGGTGGTTATCAACTCACTG 660
consensus_3238#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------- 295
                                ***   *            **  *                          

consensus_3238#0      AGGGTGCATCTTCAAATACTTCGAAATTCATGGATGCAACAGACCATATCCATATGTAGA 720
consensus_3238#1      ------------------------------------------------------------
                                                                                  

consensus_3238#0      ACGGAATCTTCTATTATGAATT 742
consensus_3238#1      ----------------------