These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [TTTTTTTTTTTTTTGGAACTCTGCAAGGATCTTTTTTTTCTTTTTGTTTCTCATTCATTTCGAGAATAACTTATCTTGATTTCACAGGGATGACAGGTATAGATACCAACGAATTTACAGACTATCGGTATACAAAACAAATGAGTACCGTTACAAAAAGAAAAATGTGAGGGGAAAAAATGAATTATACCTATATGGCACATTGGCCGCGATTATGTACACCGCAGCATCATCCCTTTATTGAATATATAGTCTTTGGGCTACTCAAATAACTTTGAAGGCTTCATCTCTGTACCCTGGCAATAAAACCTCGGCCTGGAAAGCTTAGCTACCAGGCCTCTCTGCAGCACGCACTTGTCCGATCAGTCCAATGGCACCTCGCGGTTCCATGACGATGCATGACGAGTTAGCTGACCATGCCTCTAGTGTTGAAACTGAATTCTGTTCTCAAGTGTTCTTGGACAATAGTTTTAACAGTATGTAGCCATGTAGGGGGGAAAGAATAAGCTCATATCTCATGCCAGCTGTCCCGGCCATTGGTACCTAATAAAGGGCTTTTGAGCCACCACAAGGTTTGTCATCACTAGCTTTTGGCAAGAGCCAAATACGGGCTTCCCCACCTTAAACTGGGGTTACCACAGAATGTTCGAGCTCCCCAAAACAGGCCCCCCTCCGCGGATTATTA] [+] EMBL CA761720 [TTTTTTTTTTTTTTGGAACTCTGCAAGGATCTTTTTTTTCTTTTTGTTTCTCATTCATTTCGAGAATAACTTATCTTGATTTCACAGGGATGACAGGTATAGATACCAACGAATTTACAGACTATCGGTATACAAAACAAATGAGTACCGTTACAAAAAGAAAAATGTGAGGGGAAAAAATGAATTATACCTATATGGCACATTGGCCGCGATTATGTACACCGCAGCATCATCCCTTTATTGAATATATAGTCTTTGGGCTACTCAAATAACTTTGAAGGCTTCATCTCTGTACCCTGGCAATAAAACCTCGGCCTGGAAAGCTTAGCTACCAGGCCTCTCTGCAGCACGCACTTGTCCGATCAGTCCAATGGCACCTCGCGGTTCCATGACGATGCATGACGAGTTAGCTGACCATGCCTCTAGTGTTGAAACTGAATTCTGTTCTCAAGTGTTCTTGGACAATAGTTTTAACAGTATGTAGCCATGTAGGGGGGAAAGAATAAGCTCATATCTCATGCCAGCTGTCCCGGCCATTGGTACCTAATAAAGGGCTTTTGAGCCACCACAAGGTTTGTCATCACTAGCTTTTGGCAAGAGCCAAATACGGGCTTCCCCACCTTAAACTGGGGTTACCACAGAATGTTCGAGCTCCCCAAAACAGGCCCCCCTCCGCGGATTATTA] consensusID : consensus_3239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [TTATGTACACCGCAGCATCATCCCTTTATTGAATATATAGTCTTTGTGCTACTCAAATAACTTTGAAGGCTTCATCTCTGTACCCTGGCAATAAAACCTCGGCCTGGAAAGCTTAGCTACCAGGCCTCTCTGCAGCACGCACTTGTCCGATCAGTCCAATGGCACCTTGCGGTTCCATGACGATGCATGACGAGTTAGCTGACCATGCCTCTAGTGTTGAAACTGAATTCTGTTCTCAACTGTTCTTGGACAATAGTTTTAACAGTATGTAGCCATGTAGGTGGTAAAGAATAAGTTCATATCTCATGTCAGCTGTCCTGTTCATTGTTTTCTAATAAATGGCTTCTGACAGACCAGAAGTTTTTCATCACTAGCTATGTCAAGATCCAAAATACGGGCATCCCACCTGAGCTGTGTTACAACAGATCT] [-] EMBL AU166798 [TTATGTACACCGCAGCATCATCCCTTTATTGAATATATAGTCTTTGTGCTACTCAAATAACTTTGAAGGCTTCATCTCTGTACCCTGGCAATAAAACCTCGGCCTGGAAAGCTTAGCTACCAGGCCTCTCTGCAGCACGCACTTGTCCGATCAGTCCAATGGCACCTTGCGGTTCCATGACGATGCATGACGAGTTAGCTGACCATGCCTCTAGTGTTGAAACTGAATTCTGTTCTCAACTGTTCTTGGACAATAGTTTTAACAGTATGTAGCCATGTAGGTGGTAAAGAATAAGTTCATATCTCATGTCAGCTGTCCTGTTCATTGTTTTCTAATAAATGGCTTCTGACAGACCAGAAGTTTTTCATCACTAGCTATGTCAAGATCCAAAATACGGGCATCCCACCTGAGCTGTGTTACAACAGATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3239#0 TTTTTTTTTTTTTTGGAACTCTGCAAGGATCTTTTTTTTCTTTTTGTTTCTCATTCATTT 60 consensus_3239#1 ------------------------------------------------------------ consensus_3239#0 CGAGAATAACTTATCTTGATTTCACAGGGATGACAGGTATAGATACCAACGAATTTACAG 120 consensus_3239#1 ------------------------------------------------------------ consensus_3239#0 ACTATCGGTATACAAAACAAATGAGTACCGTTACAAAAAGAAAAATGTGAGGGGAAAAAA 180 consensus_3239#1 ------------------------------------------------------------ consensus_3239#0 TGAATTATACCTATATGGCACATTGGCCGCGATTATGTACACCGCAGCATCATCCCTTTA 240 consensus_3239#1 --------------------------------TTATGTACACCGCAGCATCATCCCTTTA 28 **************************** consensus_3239#0 TTGAATATATAGTCTTTGGGCTACTCAAATAACTTTGAAGGCTTCATCTCTGTACCCTGG 300 consensus_3239#1 TTGAATATATAGTCTTTGTGCTACTCAAATAACTTTGAAGGCTTCATCTCTGTACCCTGG 88 ****************** ***************************************** consensus_3239#0 CAATAAAACCTCGGCCTGGAAAGCTTAGCTACCAGGCCTCTCTGCAGCACGCACTTGTCC 360 consensus_3239#1 CAATAAAACCTCGGCCTGGAAAGCTTAGCTACCAGGCCTCTCTGCAGCACGCACTTGTCC 148 ************************************************************ consensus_3239#0 GATCAGTCCAATGGCACCTCGCGGTTCCATGACGATGCATGACGAGTTAGCTGACCATGC 420 consensus_3239#1 GATCAGTCCAATGGCACCTTGCGGTTCCATGACGATGCATGACGAGTTAGCTGACCATGC 208 ******************* **************************************** consensus_3239#0 CTCTAGTGTTGAAACTGAATTCTGTTCTCAAGTGTTCTTGGACAATAGTTTTAACAGTAT 480 consensus_3239#1 CTCTAGTGTTGAAACTGAATTCTGTTCTCAACTGTTCTTGGACAATAGTTTTAACAGTAT 268 ******************************* **************************** consensus_3239#0 GTAGCCATGTAGGGGGGAAAGAATAAGCTCATATCTCATGCCAGCTGTCCCGGCCATTGG 540 consensus_3239#1 GTAGCCATGTAGGTGGTAAAGAATAAGTTCATATCTCATGTCAGCTGTCCTGTTCATTGT 328 ************* ** ********** ************ ********* * ***** consensus_3239#0 TACCTAATAAAGGGCTTTTGAGCCACCACAAGGTTTGTCATCACTAGCTTTTGGCAAGAG 600 consensus_3239#1 TTTCTAATAAATGGCTTCTGACAGACCAGAAG-TTTTTCATCACTAGCTAT-GTCAAGAT 386 * ******** ***** *** **** *** *** ************ * * ***** consensus_3239#0 CCAAA-TACGGGCTTCCCCACCTTAAACTGGGGTTACCACAGAATGTTCGAGCTCCCCAA 659 consensus_3239#1 CCAAAATACGGGCATCCCA--CCTGAGCTGTG-TTACAACAGATCT-------------- 429 ***** ******* **** * * * *** * **** ***** consensus_3239#0 AACAGGCCCCCCTCCGCGGATTATTA 685 consensus_3239#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||