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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3245#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1088 fasta sequence
[CGCTCACACTCCGCTCATCACTTCACATCTCTCGCCATGTTGTCCACAGCTGCTCGTCCCGCCTTCAGGGCTGGCGCTGCCGCCATGCGCTCGGCGCCCGTCTCCGCCCCTCTCGTCGCTCAGTCCGCCAACTATGCCACTCTCCGTGAGATCGAGGGCCGTCTCAAGTCCATCCGCAACATCGAGAAGATCACCAAGACCATGAAGATTGTCGCCTCCACCAAGCTCACCCGCGCCCAGAGGGCCATGAACGAGTCCATCACCTACGGAAAGACCTCGCAGAAGACCTTCGAGGAGGCCGGCACCGTCCCTGCGGAGGGCGAGGGCAAGAAGTCCCTGCTCGTCATCTGCTCTTCCGACAAGGGTCTCTGTGGTGGTATCCACTCTGGTCTGTCGCGTTACGTCCGCAAGCAGCTCACCACCGACGGCCTGCCCAGCGACATCGACATTGCCGTCATCGGCGAGAAGTGCAAGGCCCAGATGAGCAGGAGCAACCCCAAGAACATGGTTCTCAGCTTCTCTGGTGTCGGCAAGGCCGTCCCGACTTTCGCCGACGCGACCTCCATCGCCGACCAGCTCTGCCTCTTGAACACCCAGTACGACAGCATCAAGATCCTGTACAACAAGTTCATCAACGCTACCAGCTACGAGCCCACCATCATTGAGGCTTTCTCCGAGGAGGCCATCAAGGAGTCTGCCAACTTCTCTTCCTTCGAGATCGACGAGGCTGTCCTCCCCAGCCTCCGCGAGTACGCTCTTGCCAACTCCCTCTTCTGGGCTCTTGCCGAGGGCCACGCCTGCGAGCAGTCCGCCCGCCGCAACGCCATGGACAACGCCTCGAAGAACGCCGGTGAGATGATCACCAAGTTCCAGATTCTCTTCAACCGTACTCGCCAGGCCGTCATTACCGGTGAGCTCGTCGAGATTATCACTGGTGCCGCCGCCTCCGAGGAGTAGACGTAATCCACGAACAACGGAAGATGTCGGAGCATATGATGTGCAGTTGTATTGAGGAAGAGAGGAGCGAGAAATGTATGTATATAGAGCTGGGATTGAGAAGTGCTCCTGCAATCAATGCTACAGTAGTT]
[+] EMBL AK108313 [CGCTCACACTCCGCTCATCACTTCACATCTCTCGCCATGTTGTCCACAGCTGCTCGTCCCGCCTTCAGGGCTGGCGCTGCCGCCATGCGCTCGGCGCCCGTCTCCGCCCCTCTCGTCGCTCAGTCCGCCAACTATGCCACTCTCCGTGAGATCGAGGGCCGTCTCAAGTCCATCCGCAACATCGAGAAGATCACCAAGACCATGAAGATTGTCGCCTCCACCAAGCTCACCCGCGCCCAGAGGGCCATGAACGAGTCCATCACCTACGGAAAGACCTCGCAGAAGACCTTCGAGGAGGCCGGCACCGTCCCTGCGGAGGGCGAGGGCAAGAAGTCCCTGCTCGTCATCTGCTCTTCCGACAAGGGTCTCTGTGGTGGTATCCACTCTGGTCTGTCGCGTTACGTCCGCAAGCAGCTCACCACCGACGGCCTGCCCAGCGACATCGACATTGCCGTCATCGGCGAGAAGTGCAAGGCCCAGATGAGCAGGAGCAACCCCAAGAACATGGTTCTCAGCTTCTCTGGTGTCGGCAAGGCCGTCCCGACTTTCGCCGACGCGACCTCCATCGCCGACCAGCTCTGCCTCTTGAACACCCAGTACGACAGCATCAAGATCCTGTACAACAAGTTCATCAACGCTACCAGCTACGAGCCCACCATCATTGAGGCTTTCTCCGAGGAGGCCATCAAGGAGTCTGCCAACTTCTCTTCCTTCGAGATCGACGAGGCTGTCCTCCCCAGCCTCCGCGAGTACGCTCTTGCCAACTCCCTCTTCTGGGCTCTTGCCGAGGGCCACGCCTGCGAGCAGTCCGCCCGCCGCAACGCCATGGACAACGCCTCGAAGAACGCCGGTGAGATGATCACCAAGTTCCAGATTCTCTTCAACCGTACTCGCCAGGCCGTCATTACCGGTGAGCTCGTCGAGATTATCACTGGTGCCGCCGCCTCCGAGGAGTAGACGTAATCCACGAACAACGGAAGATGTCGGAGCATATGATGTGCAGTTGTATTGAGGAAGAGAGGAGCGAGAAATGTATGTATATAGAGCTGGGATTGAGAAGTGCTCCTGCAATCAATGCTACAGTAGTT]
consensusID : consensus_3245#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 860 fasta sequence
[GATCCGCAACATCGAGAAAATTACCAAGACGATGAAGATCGTCGCCTCCACCAAGCTCACCCGCGCCCAGAGGGCCATGACCGAGTCCCGCAACTACGGTCAGACCTCCAACACCGTCTTCGAGCAGGCTGAGACGAAGCCCACCGAGGGCGAGGGCAAGAAGACGCTCGTCGTGGTCTGCAGCTCCGACAAGGGTCTCTGCGGTGGTATCCACTCCGGTCTCTCCAGGGCGGTGCGCAAGTTCCTCCTCGAGCAACCCGAGGCCGACCTTGCCATCATCGGCGAGAAGTGCAAGGCCCAGCTCAGCCGTTCCAACGGCAAGAACGTCGTCCTCAGCTTCGCCGGTGTCGGAAAGGACGTCCCTACCTTCGCCGATGCTTCCGCCATCGCCGACATGATCACCACCCTCCCGACCGAGTACTCCTCCATCAAGATCCTCTACAACAAGTTCCTCAACGCCCAGAGCTACGAGGCCACCCCCATCGAGGCTTTCTCCGAGGAGGCCATCCAGCAGTCGCCCAACTTCTCTGCTTTCGAGATCGACGACGAGGTTCTTGGCAACCTCCGTGAGTACGCGCTCGCCAACTCGCTCTACTGGGCTCTGGCCGAGGGTCACGCATGCGAGCAGTCTGCCCGACGAAACGCCATGGACAACGCCTCCAAGAACGCCGGCGACATGATCAACAAGTTCCAGATTCTCTTCAACCGTACCCGTCAAGCCGTCATTACTGGCGAACTCGTTGAAATCATTACTGGTGCGGCTGCTTCCGAGAGCTAGAGGATGCTGTGAGATGTTAGACTATTTACCCAAAACGTCGGCTCGGCTATCCGCCATGAGTTAGGCTGTGTAGAATAAAGCT]
[+] EMBL AK109020 [GATCCGCAACATCGAGAAAATTACCAAGACGATGAAGATCGTCGCCTCCACCAAGCTCACCCGCGCCCAGAGGGCCATGACCGAGTCCCGCAACTACGGTCAGACCTCCAACACCGTCTTCGAGCAGGCTGAGACGAAGCCCACCGAGGGCGAGGGCAAGAAGACGCTCGTCGTGGTCTGCAGCTCCGACAAGGGTCTCTGCGGTGGTATCCACTCCGGTCTCTCCAGGGCGGTGCGCAAGTTCCTCCTCGAGCAACCCGAGGCCGACCTTGCCATCATCGGCGAGAAGTGCAAGGCCCAGCTCAGCCGTTCCAACGGCAAGAACGTCGTCCTCAGCTTCGCCGGTGTCGGAAAGGACGTCCCTACCTTCGCCGATGCTTCCGCCATCGCCGACATGATCACCACCCTCCCGACCGAGTACTCCTCCATCAAGATCCTCTACAACAAGTTCCTCAACGCCCAGAGCTACGAGGCCACCCCCATCGAGGCTTTCTCCGAGGAGGCCATCCAGCAGTCGCCCAACTTCTCTGCTTTCGAGATCGACGACGAGGTTCTTGGCAACCTCCGTGAGTACGCGCTCGCCAACTCGCTCTACTGGGCTCTGGCCGAGGGTCACGCATGCGAGCAGTCTGCCCGACGAAACGCCATGGACAACGCCTCCAAGAACGCCGGCGACATGATCAACAAGTTCCAGATTCTCTTCAACCGTACCCGTCAAGCCGTCATTACTGGCGAACTCGTTGAAATCATTACTGGTGCGGCTGCTTCCGAGAGCTAGAGGATGCTGTGAGATGTTAGACTATTTACCCAAAACGTCGGCTCGGCTATCCGCCATGAGTTAGGCTGTGTAGAATAAAGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3245#0 CGCTCACACTCCGCTCATCACTTCACATCTCTCGCCATGTTGTCCACAGCTGCTCGTCCC 60
consensus_3245#1 ------------------------------------------------------------
consensus_3245#0 GCCTTCAGGGCTGGCGCTGCCGCCATGCGCTCGGCGCCCGTCTCCGCCCCTCTCGTCGCT 120
consensus_3245#1 ------------------------------------------------------------
consensus_3245#0 CAGTCCGCCAACTATGCCACTCTCCGTGAGATCGAGGGCCGTCTCAAGTCCATCCGCAAC 180
consensus_3245#1 --------------------------------------------------GATCCGCAAC 10
*********
consensus_3245#0 ATCGAGAAGATCACCAAGACCATGAAGATTGTCGCCTCCACCAAGCTCACCCGCGCCCAG 240
consensus_3245#1 ATCGAGAAAATTACCAAGACGATGAAGATCGTCGCCTCCACCAAGCTCACCCGCGCCCAG 70
******** ** ******** ******** ******************************
consensus_3245#0 AGGGCCATGAACGAGTCCATCACCTACGGAAAGACCTCGCAGAAGACCTTCGAGGAGGCC 300
consensus_3245#1 AGGGCCATGACCGAGTCCCGCAACTACGGTCAGACCTCCAACACCGTCTTCGAGCAGGCT 130
********** ******* ** ****** ******* * * ******* ****
consensus_3245#0 GGCACCGTCCCTGCGGAGGGCGAGGGCAAGAAGTCCCTGCTCGTCATCTGCTCTTCCGAC 360
consensus_3245#1 GAGACGAAGCCCACCGAGGGCGAGGGCAAGAAGACGCTCGTCGTGGTCTGCAGCTCCGAC 190
* ** ** * ****************** * ** **** ***** ******
consensus_3245#0 AAGGGTCTCTGTGGTGGTATCCACTCTGGTCTGTCGCGTTACGTCCGCAAGCAGCTCACC 420
consensus_3245#1 AAGGGTCTCTGCGGTGGTATCCACTCCGGTCTCTCCAGGGCGGTGCGCAAGTTCCT--CC 248
*********** ************** ***** ** * ** ****** ** **
consensus_3245#0 ACCGACGGCCTGCCCAGCGACATCGACATTGCCGTCATCGGCGAGAAGTGCAAGGCCCAG 480
consensus_3245#1 TCGAGCAACC-------CGAGGCCGACCTTGCCATCATCGGCGAGAAGTGCAAGGCCCAG 301
* * ** *** **** ***** **************************
consensus_3245#0 ATGAGCAGGAGCAACCCCAAGAACATGGTTCTCAGCTTCTCTGGTGTCGGCAAGGCCGTC 540
consensus_3245#1 CTCAGCCGTTCCAACGGCAAGAACGTCGTCCTCAGCTTCGCCGGTGTCGGAAAGGACGTC 361
* *** * **** ******* * ** ********* * ******** **** ****
consensus_3245#0 CCGACTTTCGCCGACGCGACCTCCATCGCCGACCAGCTCTGCCTCTTGAACACCCAGTAC 600
consensus_3245#1 CCTACCTTCGCCGATGCTTCCGCCATCGCCGACATGATCACCACCCTCCCGACCGAGTAC 421
** ** ******** ** ** *********** * ** * * * *** *****
consensus_3245#0 GACAGCATCAAGATCCTGTACAACAAGTTCATCAACGCTACCAGCTACGAGCCCACCATC 660
consensus_3245#1 TCCTCCATCAAGATCCTCTACAACAAGTTCCTCAACGCCCAGAGCTACGAGGCCACCCCC 481
* ************ ************ ******* ********* ***** *
consensus_3245#0 ATTGAGGCTTTCTCCGAGGAGGCCATCAAGGAGTCTGCCAACTTCTCTTCCTTCGAGATC 720
consensus_3245#1 ATCGAGGCTTTCTCCGAGGAGGCCATCCAGCAGTCGCCCAACTTCTCTGCTTTCGAGATC 541
** ************************ ** **** *********** * *********
consensus_3245#0 GACGAGGCTGTCCTCCCCAGCCTCCGCGAGTACGCTCTTGCCAACTCCCTCTTCTGGGCT 780
consensus_3245#1 GACGACGAGGTTCTTGGCAACCTCCGTGAGTACGCGCTCGCCAACTCGCTCTACTGGGCT 601
***** * ** ** ** ****** ******** ** ******** **** *******
consensus_3245#0 CTTGCCGAGGGCCACGCCTGCGAGCAGTCCGCCCGCCGCAACGCCATGGACAACGCCTCG 840
consensus_3245#1 CTGGCCGAGGGTCACGCATGCGAGCAGTCTGCCCGACGAAACGCCATGGACAACGCCTCC 661
** ******** ***** *********** ***** ** ********************
consensus_3245#0 AAGAACGCCGGTGAGATGATCACCAAGTTCCAGATTCTCTTCAACCGTACTCGCCAGGCC 900
consensus_3245#1 AAGAACGCCGGCGACATGATCAACAAGTTCCAGATTCTCTTCAACCGTACCCGTCAAGCC 721
*********** ** ******* *************************** ** ** ***
consensus_3245#0 GTCATTACCGGTGAGCTCGTCGAGATTATCACTGGTGCCGCCGCCTCCGAGGAGTAGACG 960
consensus_3245#1 GTCATTACTGGCGAACTCGTTGAAATCATTACTGGTGCGGCTGCTTCCGAGAGCTAGA-- 779
******** ** ** ***** ** ** ** ******** ** ** ****** ****
consensus_3245#0 TAATCCACGAACAACGGAAGATGTCGGAGCATATGATGTGCAGTTGTATTGAGGAAGAGA 1020
consensus_3245#1 --------GGATGCTGTGAGATGTTAGACTATTTAC----CCAAAACGTCGGCTCGGCTA 827
* * * ****** ** ** * * * * * *
consensus_3245#0 GGAGCGAGAAATGTATGTATATAGAGCTGGGATTGAGAAGTGCTCCTGCAATCAATGCTA 1080
consensus_3245#1 TCCGCCATGAGTTAGGCTGTGTAGAATAAAGCT--------------------------- 860
** * * * * * **** * *
consensus_3245#0 CAGTAGTT 1088
consensus_3245#1 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||