cluster # 3246

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Oryza sativa
cluster # 3246 cluster # 3246 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3246#0 length = 598 sequences # 1

consensus_3246#1 length = 443 sequences # 1

consensusID : consensus_3246#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 598
fasta sequence

                              [CGCCTTTTGCCTCTCCGATTCAAGCCGACGAGGCGACGATGGACGCCCTCACCCGCCTCCACCGCGCCCTCGCCGGCGGCGACGACGACGAGGAGCAGCCGGAGGATTCTATCCTTGGCGACACCGAGGGCATACGCTCCCTATCCCCTGTCCAGCGGGTCTACGGCTTCGCCGCGTGCTTGGTTGCGGGACTGGCTCTGATGATCCTGTCACTTGTAGTTTTCGTCAGACCCATCAAATTTGCAGTCATTTTACATTTGGAAACATCCTAGCAGTTGGGAGCTTTCCTAATAGGGCCAAGTCAACAGTTGAGGATGATGCTTGACCCAGTTCGTGTGTATGCAACAGCTATTTACGGTGGATTTGTTTTTCTGGCTCTAATTTTTGCTCTTTGGATCCATTCCAAGGTTCTAACATTGATTGCAATCATATGCGAGATCTGTGCTCTGTTCTGGTATAGTTTGAGCTACATCCCTTTCGCTCGGCGAATGGTGTCTGACCTGATGGTGAAGCTCTGTGACACTGAACTTTGACCTGATGGTGAAGTTCATGGGTAGTATCAGGATGCCTTAAGGTGCTTGCCCATGTTAATGCAATA]

[+] EMBL CF291795             [CGCCTTTTGCCTCTCCGATTCAAGCCGACGAGGCGACGATGGACGCCCTCACCCGCCTCCACCGCGCCCTCGCCGGCGGCGACGACGACGAGGAGCAGCCGGAGGATTCTATCCTTGGCGACACCGAGGGCATACGCTCCCTATCCCCTGTCCAGCGGGTCTACGGCTTCGCCGCGTGCTTGGTTGCGGGACTGGCTCTGATGATCCTGTCACTTGTAGTTTTCGTCAGACCCATCAAATTTGCAGTCATTTTACATTTGGAAACATCCTAGCAGTTGGGAGCTTTCCTAATAGGGCCAAGTCAACAGTTGAGGATGATGCTTGACCCAGTTCGTGTGTATGCAACAGCTATTTACGGTGGATTTGTTTTTCTGGCTCTAATTTTTGCTCTTTGGATCCATTCCAAGGTTCTAACATTGATTGCAATCATATGCGAGATCTGTGCTCTGTTCTGGTATAGTTTGAGCTACATCCCTTTCGCTCGGCGAATGGTGTCTGACCTGATGGTGAAGCTCTGTGACACTGAACTTTGACCTGATGGTGAAGTTCATGGGTAGTATCAGGATGCCTTAAGGTGCTTGCCCATGTTAATGCAATA]




>consensus_3246#0
CGCCTTTTGCCTCTCCGATTCAAGCCGACGAGGCGACGATGGACGCCCTCACCCGCCTCC
ACCGCGCCCTCGCCGGCGGCGACGACGACGAGGAGCAGCCGGAGGATTCTATCCTTGGCG
ACACCGAGGGCATACGCTCCCTATCCCCTGTCCAGCGGGTCTACGGCTTCGCCGCGTGCT
TGGTTGCGGGACTGGCTCTGATGATCCTGTCACTTGTAGTTTTCGTCAGACCCATCAAAT
TTGCAGTCATTTTACATTTGGAAACATCCTAGCAGTTGGGAGCTTTCCTAATAGGGCCAA
GTCAACAGTTGAGGATGATGCTTGACCCAGTTCGTGTGTATGCAACAGCTATTTACGGTG
GATTTGTTTTTCTGGCTCTAATTTTTGCTCTTTGGATCCATTCCAAGGTTCTAACATTGA
TTGCAATCATATGCGAGATCTGTGCTCTGTTCTGGTATAGTTTGAGCTACATCCCTTTCG
CTCGGCGAATGGTGTCTGACCTGATGGTGAAGCTCTGTGACACTGAACTTTGACCTGATG
GTGAAGTTCATGGGTAGTATCAGGATGCCTTAAGGTGCTTGCCCATGTTAATGCAATA

consensusID : consensus_3246#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence

                              [GGGCTCAAATTTTTGCTCTTGGGATCCATTCCAAGGTTTTACCATTGATGGCAATCATATGCAAGATCTGTGCTTTGTTCTGGAATAGTTTGAGCTACATCCCTTTCGCTCGGAGAATGGTGTTTGACCTAATGGTGAAGTTCTGTGACATTGAACTTTGCCCTAATGGTGAAGTTCATGGGTAGTATCAGAATCCCTTAAGGTGCTTGCCCATGTTAAGGCAATACTGTTTTTCCTCCTCCCCAGTATTGTTTGTTCCCTTAAGTCCTTACAATCCAAATTTTGTGGATACACATCCCTTTATGTTTGGTATAAATGTATTACATCAGGCCCTTGTTTTTTGTAACGCTGTAAGTTCAAATCTGTTTGAAATGGGCCAAACAATTGAGGCATCAGGTATACAAATTTTTTGGCGGCCCAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF291794             [GGGCTCAAATTTTTGCTCTTGGGATCCATTCCAAGGTTTTACCATTGATGGCAATCATATGCAAGATCTGTGCTTTGTTCTGGAATAGTTTGAGCTACATCCCTTTCGCTCGGAGAATGGTGTTTGACCTAATGGTGAAGTTCTGTGACATTGAACTTTGCCCTAATGGTGAAGTTCATGGGTAGTATCAGAATCCCTTAAGGTGCTTGCCCATGTTAAGGCAATACTGTTTTTCCTCCTCCCCAGTATTGTTTGTTCCCTTAAGTCCTTACAATCCAAATTTTGTGGATACACATCCCTTTATGTTTGGTATAAATGTATTACATCAGGCCCTTGTTTTTTGTAACGCTGTAAGTTCAAATCTGTTTGAAATGGGCCAAACAATTGAGGCATCAGGTATACAAATTTTTTGGCGGCCCAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_3246#1
GGGCTCAAATTTTTGCTCTTGGGATCCATTCCAAGGTTTTACCATTGATGGCAATCATAT
GCAAGATCTGTGCTTTGTTCTGGAATAGTTTGAGCTACATCCCTTTCGCTCGGAGAATGG
TGTTTGACCTAATGGTGAAGTTCTGTGACATTGAACTTTGCCCTAATGGTGAAGTTCATG
GGTAGTATCAGAATCCCTTAAGGTGCTTGCCCATGTTAAGGCAATACTGTTTTTCCTCCT
CCCCAGTATTGTTTGTTCCCTTAAGTCCTTACAATCCAAATTTTGTGGATACACATCCCT
TTATGTTTGGTATAAATGTATTACATCAGGCCCTTGTTTTTTGTAACGCTGTAAGTTCAA
ATCTGTTTGAAATGGGCCAAACAATTGAGGCATCAGGTATACAAATTTTTTGGCGGCCCA
AAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3246#0      CGCCTTTTGCCTCTCCGATTCAAGCCGACGAGGCGACGATGGACGCCCTCACCCGCCTCC 60
consensus_3246#1      ------------------------------------------------------------
                                                                                  

consensus_3246#0      ACCGCGCCCTCGCCGGCGGCGACGACGACGAGGAGCAGCCGGAGGATTCTATCCTTGG-- 118
consensus_3246#1      ------------------------------------GGGCTCAAATTTTTGCTCTTGGGA 24
                                                           * *  *   ** *   *****  

consensus_3246#0      -CGACACCGAGGGCATACGCTCCCTATCCCCTGTCCAGCGGGTCTACGGCTTCGCCGCGT 177
consensus_3246#1      TCCATTCCAAGGTTTTACCATTGATGGCAATCATATGCAAGATCTGTG-CTTTGTTCTGG 83
                       * *  ** ***   ***  *   *  *     *      * ***  * *** *    * 

consensus_3246#0      GCTTGGTTGCGGGACTGGCTCTGATGATCCTGTCACTTGTAGTTTT-CGTCAGACCCATC 236
consensus_3246#1      AATAGTTTG-------AGCT---ACATCCCTTTCGCTCGGAGAATGGTGTTTGACCTAAT 133
                        * * ***        ***   *    *** ** ** * **  *   **  **** *  

consensus_3246#0      AAATTTGCAGTCATTTTACATTTGGAAACATCCTAGCAGTTGGGAGCTTTCCTAATAGGG 296
consensus_3246#1      GG---TGAAGTTCTGTGACATTGAACTTTGCCCTAATGGT---GAAGTTCATGGGTAGTA 187
                           ** ***  * * *****         ****   **   **  **      ***  

consensus_3246#0      CCAAGTCAACAGTTGAGGATGATGCTTGACCCAGTTCGTGTGTATGCAACAGCTATTTAC 356
consensus_3246#1      TCAGA--ATCCCTTAAGG----TGCTTGCCC------ATGTTAAGGCAATA-CTGTTT-- 232
                       **    * *  ** ***    ****** **       ***  * **** * ** ***  

consensus_3246#0      GGTGGATTTGTTTTTCTGGCTCTAATTTTTGCTCTTTGGATCCATTCCAAGGTTCTAACA 416
consensus_3246#1      ------TTCCTCCTCCC--CAGTATTGTTTGTTCCCTTAAGTCCTTACAA--TCCAAATT 282
                            **  *  * *   *  ** * **** **  *  *  * ** ***  * * **  

consensus_3246#0      TTGATTGCAATCATATGCGAGATCTGTGCTCTGTTCTGGTATAGTTTG--AGCTACATCC 474
consensus_3246#1      TTG--TGGATACACATCCC---TTTATGTTTGGTATAAATGTATTACATCAGGCCCTTGT 337
                      ***  ** *  ** ** *    * * ** *  **     * ** *     **   * *  

consensus_3246#0      CTTTCGCTCGGCGAATGGTGTCTGACCTGATGGTGAAGCTCTGTGACACTGAACTTTGAC 534
consensus_3246#1      TTTTTGTAACGCTGTAAGT-TCAAATCTGTTTGAAATGGGCCAAACAATTGAGGC---AT 393
                       *** *    **     ** **  * *** * *  * *  *      * ***      * 

consensus_3246#0      CTGATGGTGAAGTTCATGGGTAGTATCAGGATGCCTTAAGGTGCTTGCCCATGTTAATGC 594
consensus_3246#1      CAGGTATACAAATTTTTTGGCGGC-CCAAAAAAAAAAAAAAAAAAAAAAAA--------- 443
                      * * *    ** **  * **  *   **  *      **           *         

consensus_3246#0      AATA 598
consensus_3246#1      ----