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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3253#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1164 fasta sequence
[ATCCCTAACCCTAACCTCCTCCTCCGACCGTCGCGCTCTCTCTCCACCTCCACCACGCCGGCAACCCGCGCCCCCGCCACCCCGGTGGCCGTCCTCTGGGATTTGGCCGCCTCCCGGCCCCCCTCCACCCTCCCCCTCTACGACGCCGCCGTGCGGCTCCACCTCGCCGCCACCTCCTTCGGCCGGGTCCGCCTCTCCGCCGCCTTCGTCCACCCCGGCCACCGCCTCCCTGCCCCGTCTCCGTCCGCCGCCGCGGCCGCCGTGCACCTCTGCCGCGTCTGCGGCCGCCGCTTCCGCGCCCGCGACACGCTGCTCCGCCACTTCGACGCGATCCACGCCCGCGAGCACGCCAAGCGCCTCGCGCGGATCGACTCCTCCCGCGGCGACCGACGCGTGCGCCTCGCCGCCGCGCTCTCCCTCAAGCTCTCCAAGTACGAGAAGGCCGCCCGCGAGCTCACCGCCGCCGCCGACCCCTGCTCCCCCGCCGACGACCTCCGCAGGGCCCGCGTCGCCGTCGAGCTCTCCCCGACCCTGTCCGTCTCCCTCCTTGAGCGCGCCCACGAGGTGCTCGACGGAGGGTCCGTTCGGTGCCTGATGCTGGTCTCGGCCCGCGACGAGCTCGCTCCTCTGCTGCGCCTCGCGAGGGAGAAGGGCGTCCGGTCCGTGGTCGTCGGCGGGGAGTCCGGGCCGGCGAGGTGGGCTGACGTTGGGTTCAGCTGGGCAGAGGTGATCGCCGGTAAGGCCAGGAAGGCGGCGCCGTCTGTGTCCGGCAAGTGGCGGGACAGGGACGTGCTCAAGAGGCTGGAATGGAGGTACGACGACGACGACGAAGAGGTGGTGTTCGAGGAGGACGGTGACGAGGATGGGATCGATGAGCTGACGAGGAATTCCAAGGGGAAGCCATGGTGGAAGCTGGAATCGGATGGCGAGGACTCCAGTGCTTGCCGTTGAATGGTGAATCGGTGATGTCGCACACAAGGTGTTCGTCCATTTGCTCCCGTGGATCCTTCCATCCAACAGAGGGAGTACTATCAACCAGGTTGGGGACCTGGTGCTTTGCCTGACCATTTCAAAAGAGTACTCTTACACACGTAACAGTAGTAATTGTACGGAAGATATCTGTTCAGATTATTTGGACTGCCATTCGTTCGCATGAGATGTGCT]
[+] EMBL AK105634 [ATCCCTAACCCTAACCTCCTCCTCCGACCGTCGCGCTCTCTCTCCACCTCCACCACGCCGGCAACCCGCGCCCCCGCCACCCCGGTGGCCGTCCTCTGGGATTTGGCCGCCTCCCGGCCCCCCTCCACCCTCCCCCTCTACGACGCCGCCGTGCGGCTCCACCTCGCCGCCACCTCCTTCGGCCGGGTCCGCCTCTCCGCCGCCTTCGTCCACCCCGGCCACCGCCTCCCTGCCCCGTCTCCGTCCGCCGCCGCGGCCGCCGTGCACCTCTGCCGCGTCTGCGGCCGCCGCTTCCGCGCCCGCGACACGCTGCTCCGCCACTTCGACGCGATCCACGCCCGCGAGCACGCCAAGCGCCTCGCGCGGATCGACTCCTCCCGCGGCGACCGACGCGTGCGCCTCGCCGCCGCGCTCTCCCTCAAGCTCTCCAAGTACGAGAAGGCCGCCCGCGAGCTCACCGCCGCCGCCGACCCCTGCTCCCCCGCCGACGACCTCCGCAGGGCCCGCGTCGCCGTCGAGCTCTCCCCGACCCTGTCCGTCTCCCTCCTTGAGCGCGCCCACGAGGTGCTCGACGGAGGGTCCGTTCGGTGCCTGATGCTGGTCTCGGCCCGCGACGAGCTCGCTCCTCTGCTGCGCCTCGCGAGGGAGAAGGGCGTCCGGTCCGTGGTCGTCGGCGGGGAGTCCGGGCCGGCGAGGTGGGCTGACGTTGGGTTCAGCTGGGCAGAGGTGATCGCCGGTAAGGCCAGGAAGGCGGCGCCGTCTGTGTCCGGCAAGTGGCGGGACAGGGACGTGCTCAAGAGGCTGGAATGGAGGTACGACGACGACGACGAAGAGGTGGTGTTCGAGGAGGACGGTGACGAGGATGGGATCGATGAGCTGACGAGGAATTCCAAGGGGAAGCCATGGTGGAAGCTGGAATCGGATGGCGAGGACTCCAGTGCTTGCCGTTGAATGGTGAATCGGTGATGTCGCACACAAGGTGTTCGTCCATTTGCTCCCGTGGATCCTTCCATCCAACAGAGGGAGTACTATCAACCAGGTTGGGGACCTGGTGCTTTGCCTGACCATTTCAAAAGAGTACTCTTACACACGTAACAGTAGTAATTGTACGGAAGATATCTGTTCAGATTATTTGGACTGCCATTCGTTCGCATGAGATGTGCT]
consensusID : consensus_3253#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence
[CAAGGGGAGTCCGGGCCGGCGAGGTGGGCTGACGTTGGGTTCAGCTGGGCAGAGGTGATCGCCGGTAAGGCCAGGAAGGCGGCGCCGTCTGTGTCCGGCAAGTGGCGGGACAGGGACGTGCTCAAGAGGCTGGAATGGAGGTACGACGACGACGACGAAGAGGTGGTGTTCGAGGAGGACGGTGACGAGGATGGGATCGATGAGCTGACGAGGAATTCCAAGGGGAAGCCATGGTGGAAGCTGGAATCGGATGGCGAGGACTCCAGTGCTTGCCGTTGAATGGTGAATCGGTGATGTCGCACACAAGGTGTTCGTCCATTTGCTCCCGTGGATCCTTCCATCCAACAGAGGGAGTACTATCAACCAGGTTGGGGAACTACAATGACCTGGTGCTTTGCCTGACCATTTCAAAAGAGTACTCTTACACACGTAACAGTAGTAATTGTACGGAAGATATCTGTTCAGATTATTTGGACTGCCATTCGTTCGCATGAGATGTGCCTTTCCAATAGCACCAACTCNTGTTTTAACTA]
[+] EMBL CA766333 [CAAGGGGAGTCCGGGCCGGCGAGGTGGGCTGACGTTGGGTTCAGCTGGGCAGAGGTGATCGCCGGTAAGGCCAGGAAGGCGGCGCCGTCTGTGTCCGGCAAGTGGCGGGACAGGGACGTGCTCAAGAGGCTGGAATGGAGGTACGACGACGACGACGAAGAGGTGGTGTTCGAGGAGGACGGTGACGAGGATGGGATCGATGAGCTGACGAGGAATTCCAAGGGGAAGCCATGGTGGAAGCTGGAATCGGATGGCGAGGACTCCAGTGCTTGCCGTTGAATGGTGAATCGGTGATGTCGCACACAAGGTGTTCGTCCATTTGCTCCCGTGGATCCTTCCATCCAACAGAGGGAGTACTATCAACCAGGTTGGGGAACTACAATGACCTGGTGCTTTGCCTGACCATTTCAAAAGAGTACTCTTACACACGTAACAGTAGTAATTGTACGGAAGATATCTGTTCAGATTATTTGGACTGCCATTCGTTCGCATGAGATGTGCCTTTCCAATAGCACCAACTCNTGTTTTAACTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3253#0 ATCCCTAACCCTAACCTCCTCCTCCGACCGTCGCGCTCTCTCTCCACCTCCACCACGCCG 60
consensus_3253#1 ------------------------------------------------------------
consensus_3253#0 GCAACCCGCGCCCCCGCCACCCCGGTGGCCGTCCTCTGGGATTTGGCCGCCTCCCGGCCC 120
consensus_3253#1 ------------------------------------------------------------
consensus_3253#0 CCCTCCACCCTCCCCCTCTACGACGCCGCCGTGCGGCTCCACCTCGCCGCCACCTCCTTC 180
consensus_3253#1 ------------------------------------------------------------
consensus_3253#0 GGCCGGGTCCGCCTCTCCGCCGCCTTCGTCCACCCCGGCCACCGCCTCCCTGCCCCGTCT 240
consensus_3253#1 ------------------------------------------------------------
consensus_3253#0 CCGTCCGCCGCCGCGGCCGCCGTGCACCTCTGCCGCGTCTGCGGCCGCCGCTTCCGCGCC 300
consensus_3253#1 ------------------------------------------------------------
consensus_3253#0 CGCGACACGCTGCTCCGCCACTTCGACGCGATCCACGCCCGCGAGCACGCCAAGCGCCTC 360
consensus_3253#1 ------------------------------------------------------------
consensus_3253#0 GCGCGGATCGACTCCTCCCGCGGCGACCGACGCGTGCGCCTCGCCGCCGCGCTCTCCCTC 420
consensus_3253#1 ------------------------------------------------------------
consensus_3253#0 AAGCTCTCCAAGTACGAGAAGGCCGCCCGCGAGCTCACCGCCGCCGCCGACCCCTGCTCC 480
consensus_3253#1 ------------------------------------------------------------
consensus_3253#0 CCCGCCGACGACCTCCGCAGGGCCCGCGTCGCCGTCGAGCTCTCCCCGACCCTGTCCGTC 540
consensus_3253#1 ------------------------------------------------------------
consensus_3253#0 TCCCTCCTTGAGCGCGCCCACGAGGTGCTCGACGGAGGGTCCGTTCGGTGCCTGATGCTG 600
consensus_3253#1 ------------------------------------------------------------
consensus_3253#0 GTCTCGGCCCGCGACGAGCTCGCTCCTCTGCTGCGCCTCGCGAGGGAGAAGGGCGTCCGG 660
consensus_3253#1 ------------------------------------------------------------
consensus_3253#0 TCCGTGGTCGTCGGCGGGGAGTCCGGGCCGGCGAGGTGGGCTGACGTTGGGTTCAGCTGG 720
consensus_3253#1 ------------CAAGGGGAGTCCGGGCCGGCGAGGTGGGCTGACGTTGGGTTCAGCTGG 48
*********************************************
consensus_3253#0 GCAGAGGTGATCGCCGGTAAGGCCAGGAAGGCGGCGCCGTCTGTGTCCGGCAAGTGGCGG 780
consensus_3253#1 GCAGAGGTGATCGCCGGTAAGGCCAGGAAGGCGGCGCCGTCTGTGTCCGGCAAGTGGCGG 108
************************************************************
consensus_3253#0 GACAGGGACGTGCTCAAGAGGCTGGAATGGAGGTACGACGACGACGACGAAGAGGTGGTG 840
consensus_3253#1 GACAGGGACGTGCTCAAGAGGCTGGAATGGAGGTACGACGACGACGACGAAGAGGTGGTG 168
************************************************************
consensus_3253#0 TTCGAGGAGGACGGTGACGAGGATGGGATCGATGAGCTGACGAGGAATTCCAAGGGGAAG 900
consensus_3253#1 TTCGAGGAGGACGGTGACGAGGATGGGATCGATGAGCTGACGAGGAATTCCAAGGGGAAG 228
************************************************************
consensus_3253#0 CCATGGTGGAAGCTGGAATCGGATGGCGAGGACTCCAGTGCTTGCCGTTGAATGGTGAAT 960
consensus_3253#1 CCATGGTGGAAGCTGGAATCGGATGGCGAGGACTCCAGTGCTTGCCGTTGAATGGTGAAT 288
************************************************************
consensus_3253#0 CGGTGATGTCGCACACAAGGTGTTCGTCCATTTGCTCCCGTGGATCCTTCCATCCAACAG 1020
consensus_3253#1 CGGTGATGTCGCACACAAGGTGTTCGTCCATTTGCTCCCGTGGATCCTTCCATCCAACAG 348
************************************************************
consensus_3253#0 AGGGAGTACTATCAACCAGGTTGGGGA----------CCTGGTGCTTTGCCTGACCATTT 1070
consensus_3253#1 AGGGAGTACTATCAACCAGGTTGGGGAACTACAATGACCTGGTGCTTTGCCTGACCATTT 408
*************************** ***********************
consensus_3253#0 CAAAAGAGTACTCTTACACACGTAACAGTAGTAATTGTACGGAAGATATCTGTTCAGATT 1130
consensus_3253#1 CAAAAGAGTACTCTTACACACGTAACAGTAGTAATTGTACGGAAGATATCTGTTCAGATT 468
************************************************************
consensus_3253#0 ATTTGGACTGCCATTCGTTCGCATGAGATGTGCT-------------------------- 1164
consensus_3253#1 ATTTGGACTGCCATTCGTTCGCATGAGATGTGCCTTTCCAATAGCACCAACTCNTGTTTT 528
*********************************
consensus_3253#0 -----
consensus_3253#1 AACTA 533
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||