cluster # 3255

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Oryza sativa
cluster # 3255 cluster # 3255 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3255#0 length = 775 sequences # 1

consensus_3255#1 length = 771 sequences # 1

consensusID : consensus_3255#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 775
fasta sequence

                              [AAGGGGGGTGGGATTNTATTGCACAAATCATCATGTTCTTGCTTCAATTCCATTCTACTACTCTGTATATGTTGTGCGGNTTTCAGTGGGNGATCACCGGNTCAAGCCTAGCTGACATCTTCCAAGGCTAGAATAAGGCAAGAACATGATCGGTTTCCACTGCNAAAATTCCTGCGTTGNNTTTTATTTTATTGNTTTTCTTCTCTTATTCATAGATCAAGNAAACTTATATGNGGCTGCCATGCTTAGTATTTTCGTGCCGACCTTGAAATGACAATTTGTGTCTATGTGCTTGCTCCGGTCGTGAAAAAAATCGCAGAGGGAGATTGCTGATTTGTTGCCGATATTCATGGNGACAATATTAGGCTTATTACTCGTGAGNTTATATTGNTCCATAGAAAACACAATAGCCATATTATTGTNCCTTGGGAAAACGTGGTCGTCTCAACAATGNNCTTGGGCTTGCAACCTTTCTGCTTTTGTGATTGCCTTGGTGCCAAGGAAGAAGAACACACCCAATCAGCTAGCAACAATCCCATCATCTGGCAATCAGAAAAGCAAAAAGGGGGGGGNGGTATCATCCTACCAGGCAGAGTATATTTNCATGGNGATCTCAGCTTGCCAAGGGNGCTATCTCCGGCCCAAAAAAAAAATTCTAATATTANATGGGGATGGGNTTATAGNACAATAAATCTNGGACGAGGAGGTTATACCAATTTTATTTGNGCTAAAAAAATAATCCCCANTCCANTAGNAAAATTGGGGTTTTTTGGGA]

[+] EMBL CB096728             [AAGGGGGGTGGGATTNTATTGCACAAATCATCATGTTCTTGCTTCAATTCCATTCTACTACTCTGTATATGTTGTGCGGNTTTCAGTGGGNGATCACCGGNTCAAGCCTAGCTGACATCTTCCAAGGCTAGAATAAGGCAAGAACATGATCGGTTTCCACTGCNAAAATTCCTGCGTTGNNTTTTATTTTATTGNTTTTCTTCTCTTATTCATAGATCAAGNAAACTTATATGNGGCTGCCATGCTTAGTATTTTCGTGCCGACCTTGAAATGACAATTTGTGTCTATGTGCTTGCTCCGGTCGTGAAAAAAATCGCAGAGGGAGATTGCTGATTTGTTGCCGATATTCATGGNGACAATATTAGGCTTATTACTCGTGAGNTTATATTGNTCCATAGAAAACACAATAGCCATATTATTGTNCCTTGGGAAAACGTGGTCGTCTCAACAATGNNCTTGGGCTTGCAACCTTTCTGCTTTTGTGATTGCCTTGGTGCCAAGGAAGAAGAACACACCCAATCAGCTAGCAACAATCCCATCATCTGGCAATCAGAAAAGCAAAAAGGGGGGGGNGGTATCATCCTACCAGGCAGAGTATATTTNCATGGNGATCTCAGCTTGCCAAGGGNGCTATCTCCGGCCCAAAAAAAAAATTCTAATATTANATGGGGATGGGNTTATAGNACAATAAATCTNGGACGAGGAGGTTATACCAATTTTATTTGNGCTAAAAAAATAATCCCCANTCCANTAGNAAAATTGGGGTTTTTTGGGA]




>consensus_3255#0
AAGGGGGGTGGGATTNTATTGCACAAATCATCATGTTCTTGCTTCAATTCCATTCTACTA
CTCTGTATATGTTGTGCGGNTTTCAGTGGGNGATCACCGGNTCAAGCCTAGCTGACATCT
TCCAAGGCTAGAATAAGGCAAGAACATGATCGGTTTCCACTGCNAAAATTCCTGCGTTGN
NTTTTATTTTATTGNTTTTCTTCTCTTATTCATAGATCAAGNAAACTTATATGNGGCTGC
CATGCTTAGTATTTTCGTGCCGACCTTGAAATGACAATTTGTGTCTATGTGCTTGCTCCG
GTCGTGAAAAAAATCGCAGAGGGAGATTGCTGATTTGTTGCCGATATTCATGGNGACAAT
ATTAGGCTTATTACTCGTGAGNTTATATTGNTCCATAGAAAACACAATAGCCATATTATT
GTNCCTTGGGAAAACGTGGTCGTCTCAACAATGNNCTTGGGCTTGCAACCTTTCTGCTTT
TGTGATTGCCTTGGTGCCAAGGAAGAAGAACACACCCAATCAGCTAGCAACAATCCCATC
ATCTGGCAATCAGAAAAGCAAAAAGGGGGGGGNGGTATCATCCTACCAGGCAGAGTATAT
TTNCATGGNGATCTCAGCTTGCCAAGGGNGCTATCTCCGGCCCAAAAAAAAAATTCTAAT
ATTANATGGGGATGGGNTTATAGNACAATAAATCTNGGACGAGGAGGTTATACCAATTTT
ATTTGNGCTAAAAAAATAATCCCCANTCCANTAGNAAAATTGGGGTTTTTTGGGA

consensusID : consensus_3255#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 771
fasta sequence

                              [TATTGCACAAATCATCATGTTCTTGCTTAATTCCATTCTACTACTCTGTATATGTTGTGCGGATTTCAGTGGGTGATCACCGGATCAAGCCTAGCTGACATCTTCCAAGGCTAGAATAAGGCAAGAACATGATCGGTTTCCACTGCAAAAATTCCTGCATTTTATTTTATTTTATTGTTTTTCTTCTCTTATTCATAGATCAAGTAAACTTATATGTGGCTGCCATGCTTAGTATTTTCGTGCCGACCTTGAAATGACAATTTGTGTCTATGTGCTTGCTCCGGTCGTGAAAAAAATCGCAGAGGGAGATTGCTGATTTGTTGCCGATATTCATGGTGACAATATTAGGCTTATTACTCGTGAGTTTATATTGTTCCATAGAAAACACAATAGCCATATTATTGTACCTTGGGAAAACGTGGTCGTCTCAACAATGTACTTGGCCTTGCAACCTTTCTGCTTTTGTGATTGCCTTGTTGCCAAGGAAGAAGAACACACCCAATCAGCTAGCAACAATCCCATCATCTGGCAATCAGAAAAGCAAAAAGGTGGTGGTGTTATCATCCTACCAGGCAGAGTATATTTCCATGGCGATCTCAGCTTGCCAAGGCGCTATCTCCGTCCAAAAAAAATTCTAATATTAGATGTGATGGTTTATAGTACAATAAATCTGGACGAGNAGNTTATACAAATTTATTGTACTAGAAAATAATCTCATCCAATAGTAGATTGGNTTTTTGGGACGGAGGGAGTATATTGCAGATGTGTCTA]

[+] EMBL CA766343             [TATTGCACAAATCATCATGTTCTTGCTTAATTCCATTCTACTACTCTGTATATGTTGTGCGGATTTCAGTGGGTGATCACCGGATCAAGCCTAGCTGACATCTTCCAAGGCTAGAATAAGGCAAGAACATGATCGGTTTCCACTGCAAAAATTCCTGCATTTTATTTTATTTTATTGTTTTTCTTCTCTTATTCATAGATCAAGTAAACTTATATGTGGCTGCCATGCTTAGTATTTTCGTGCCGACCTTGAAATGACAATTTGTGTCTATGTGCTTGCTCCGGTCGTGAAAAAAATCGCAGAGGGAGATTGCTGATTTGTTGCCGATATTCATGGTGACAATATTAGGCTTATTACTCGTGAGTTTATATTGTTCCATAGAAAACACAATAGCCATATTATTGTACCTTGGGAAAACGTGGTCGTCTCAACAATGTACTTGGCCTTGCAACCTTTCTGCTTTTGTGATTGCCTTGTTGCCAAGGAAGAAGAACACACCCAATCAGCTAGCAACAATCCCATCATCTGGCAATCAGAAAAGCAAAAAGGTGGTGGTGTTATCATCCTACCAGGCAGAGTATATTTCCATGGCGATCTCAGCTTGCCAAGGCGCTATCTCCGTCCAAAAAAAATTCTAATATTAGATGTGATGGTTTATAGTACAATAAATCTGGACGAGNAGNTTATACAAATTTATTGTACTAGAAAATAATCTCATCCAATAGTAGATTGGNTTTTTGGGACGGAGGGAGTATATTGCAGATGTGTCTA]




>consensus_3255#1
TATTGCACAAATCATCATGTTCTTGCTTAATTCCATTCTACTACTCTGTATATGTTGTGC
GGATTTCAGTGGGTGATCACCGGATCAAGCCTAGCTGACATCTTCCAAGGCTAGAATAAG
GCAAGAACATGATCGGTTTCCACTGCAAAAATTCCTGCATTTTATTTTATTTTATTGTTT
TTCTTCTCTTATTCATAGATCAAGTAAACTTATATGTGGCTGCCATGCTTAGTATTTTCG
TGCCGACCTTGAAATGACAATTTGTGTCTATGTGCTTGCTCCGGTCGTGAAAAAAATCGC
AGAGGGAGATTGCTGATTTGTTGCCGATATTCATGGTGACAATATTAGGCTTATTACTCG
TGAGTTTATATTGTTCCATAGAAAACACAATAGCCATATTATTGTACCTTGGGAAAACGT
GGTCGTCTCAACAATGTACTTGGCCTTGCAACCTTTCTGCTTTTGTGATTGCCTTGTTGC
CAAGGAAGAAGAACACACCCAATCAGCTAGCAACAATCCCATCATCTGGCAATCAGAAAA
GCAAAAAGGTGGTGGTGTTATCATCCTACCAGGCAGAGTATATTTCCATGGCGATCTCAG
CTTGCCAAGGCGCTATCTCCGTCCAAAAAAAATTCTAATATTAGATGTGATGGTTTATAG
TACAATAAATCTGGACGAGNAGNTTATACAAATTTATTGTACTAGAAAATAATCTCATCC
AATAGTAGATTGGNTTTTTGGGACGGAGGGAGTATATTGCAGATGTGTCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3255#0      AAGGGGGGTGGGATTNTATTGCACAAATCATCATGTTCTTGCTTCAATTCCATTCTACTA 60
consensus_3255#1      ----------------TATTGCACAAATCATCATGTTCTTGCTT-AATTCCATTCTACTA 43
                                      **************************** ***************

consensus_3255#0      CTCTGTATATGTTGTGCGGNTTTCAGTGGGNGATCACCGGNTCAAGCCTAGCTGACATCT 120
consensus_3255#1      CTCTGTATATGTTGTGCGGATTTCAGTGGGTGATCACCGGATCAAGCCTAGCTGACATCT 103
                      ******************* ********** ********* *******************

consensus_3255#0      TCCAAGGCTAGAATAAGGCAAGAACATGATCGGTTTCCACTGCNAAAATTCCTGCGTTGN 180
consensus_3255#1      TCCAAGGCTAGAATAAGGCAAGAACATGATCGGTTTCCACTGCAAAAATTCCTGCATTTT 163
                      ******************************************* *********** **  

consensus_3255#0      NTTTTATTTTATTGNTTTTCTTCTCTTATTCATAGATCAAGNAAACTTATATGNGGCTGC 240
consensus_3255#1      ATTTTATTTTATTGTTTTTCTTCTCTTATTCATAGATCAAGTAAACTTATATGTGGCTGC 223
                       ************* ************************** *********** ******

consensus_3255#0      CATGCTTAGTATTTTCGTGCCGACCTTGAAATGACAATTTGTGTCTATGTGCTTGCTCCG 300
consensus_3255#1      CATGCTTAGTATTTTCGTGCCGACCTTGAAATGACAATTTGTGTCTATGTGCTTGCTCCG 283
                      ************************************************************

consensus_3255#0      GTCGTGAAAAAAATCGCAGAGGGAGATTGCTGATTTGTTGCCGATATTCATGGNGACAAT 360
consensus_3255#1      GTCGTGAAAAAAATCGCAGAGGGAGATTGCTGATTTGTTGCCGATATTCATGGTGACAAT 343
                      ***************************************************** ******

consensus_3255#0      ATTAGGCTTATTACTCGTGAGNTTATATTGNTCCATAGAAAACACAATAGCCATATTATT 420
consensus_3255#1      ATTAGGCTTATTACTCGTGAGTTTATATTGTTCCATAGAAAACACAATAGCCATATTATT 403
                      ********************* ******** *****************************

consensus_3255#0      GTNCCTTGGGAAAACGTGGTCGTCTCAACAATGNNCTTGGGCTTGCAACCTTTCTGCTTT 480
consensus_3255#1      GTACCTTGGGAAAACGTGGTCGTCTCAACAATGTACTTGGCCTTGCAACCTTTCTGCTTT 463
                      ** ******************************  ***** *******************

consensus_3255#0      TGTGATTGCCTTGGTGCCAAGGAAGAAGAACACACCCAATCAGCTAGCAACAATCCCATC 540
consensus_3255#1      TGTGATTGCCTTGTTGCCAAGGAAGAAGAACACACCCAATCAGCTAGCAACAATCCCATC 523
                      ************* **********************************************

consensus_3255#0      ATCTGGCAATCAGAAAAGCAAAAAGGGGGGGGNGGTATCATCCTACCAGGCAGAGTATAT 600
consensus_3255#1      ATCTGGCAATCAGAAAAGCAAAAAGGTGGTGGTGTTATCATCCTACCAGGCAGAGTATAT 583
                      ************************** ** ** * *************************

consensus_3255#0      TTNCATGGNGATCTCAGCTTGCCAAGGGNGCTATCTCCGGCCCAAAAAAAAAATTCTAAT 660
consensus_3255#1      TTCCATGGCGATCTCAGCTTGCCAAGG-CGCTATCTCCGTCC---AAAAAAAATTCTAAT 639
                      ** ***** ******************  ********** **   ***************

consensus_3255#0      ATTANATGGGGATGGGNTTATAGNACAATAAATCTNGGACGAGGAGGTTATACCAATTTT 720
consensus_3255#1      ATTAGATGTGAT--GGTTTATAGTACAATAAATCTGG-ACGAGNAGNTTATACAAATTTA 696
                      **** *** *    ** ****** *********** * ***** ** ****** ***** 

consensus_3255#0      ATTTGNGCTAAAAAAATAATCCCCANTCCANTAGNAAAATTGGGGTTTTTTGGGA----- 775
consensus_3255#1      --TTGTACTAGAAAA-TAATCTC--ATCCAATAGTAGATT---GGNTTTTTGGGACGGAG 748
                        ***  *** **** ***** *   **** *** * * *   ** *********     

consensus_3255#0      -----------------------
consensus_3255#1      GGAGTATATTGCAGATGTGTCTA 771