These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3256#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [AGCGACGGCGGCGATGAGCGTAAGGTTGGCGGGTCGCGTGGGCGGCGCTCGGNTGGCTCCATCGCCGGCGCCGGNCCGANGGGNAAAACGCNAGACGGAGGCGCCGCCACGACGTGGAACGCNAAGGATAGGGCGGCGGCTGCGGCGGGGGGCTCGCTGTCGTCNAGGCAGGCNATGAGGGCGGCGAATNCGGCGNAGGAGGAGGAGGATGATCGGAGGAGGAGGAGGAAGAGGGAGGAGGAGTCGCTGCGGGCTTTCATGTTCATCTCCTTCTGGGGCCCAAACTCCTNAGGCCACATCCATTTCCATGTCCATTTTCTTGGGCTTTTGCTTGTAATTTTTGGNTTTCTTTAATTTCTTTTCTTNCTGCCTTTCCTNGATCTCCATGGATCAAAGACGGTAATATTTTTTCCAACGGAAAAAGCATTTAATTTTAAAGGT] [+] EMBL C27928 [AGCGACGGCGGCGATGAGCGTAAGGTTGGCGGGTCGCGTGGGCGGCGCTCGGNTGGCTCCATCGCCGGCGCCGGNCCGANGGGNAAAACGCNAGACGGAGGCGCCGCCACGACGTGGAACGCNAAGGATAGGGCGGCGGCTGCGGCGGGGGGCTCGCTGTCGTCNAGGCAGGCNATGAGGGCGGCGAATNCGGCGNAGGAGGAGGAGGATGATCGGAGGAGGAGGAGGAAGAGGGAGGAGGAGTCGCTGCGGGCTTTCATGTTCATCTCCTTCTGGGGCCCAAACTCCTNAGGCCACATCCATTTCCATGTCCATTTTCTTGGGCTTTTGCTTGTAATTTTTGGNTTTCTTTAATTTCTTTTCTTNCTGCCTTTCCTNGATCTCCATGGATCAAAGACGGTAATATTTTTTCCAACGGAAAAAGCATTTAATTTTAAAGGT] consensusID : consensus_3256#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [AGGAGGAGGATTNTCGGAGGAGGAGGAGNAAAAGGGAGGAGGAGTCNCTGCGGGCGTTCATGTTCATCTCCTTCTGGGGCCCNAACTCCTGAGGCCACATCCATTTCCATGTCCATTTTCTTGGGCTTTGCTTGTGATTTTTGTTTTCTTGATTTCTTTCTTCCTGCCTTCCTCGATCTCCATGGATCAAANACGTGAATATTTTTGCCNACGGAAAAAGCATGTNATGTGAAGGTTTTTAGTTTTTTCAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU166927 [AGGAGGAGGATTNTCGGAGGAGGAGGAGNAAAAGGGAGGAGGAGTCNCTGCGGGCGTTCATGTTCATCTCCTTCTGGGGCCCNAACTCCTGAGGCCACATCCATTTCCATGTCCATTTTCTTGGGCTTTGCTTGTGATTTTTGTTTTCTTGATTTCTTTCTTCCTGCCTTCCTCGATCTCCATGGATCAAANACGTGAATATTTTTGCCNACGGAAAAAGCATGTNATGTGAAGGTTTTTAGTTTTTTCAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3256#0 AGCGACGGCGGCGATGAGCGTAAGGTTGGCGGGTCGCGTGGGCGGCGCTCGGNTGGCTCC 60 consensus_3256#1 ------------------------------------------------------------ consensus_3256#0 ATCGCCGGCGCCGGNCCGANGGGNAAAACGCNAGACGGAGGCGCCGCCACGACGTGGAAC 120 consensus_3256#1 ------------------------------------------------------------ consensus_3256#0 GCNAAGGATAGGGCGGCGGCTGCGGCGGGGGGCTCGCTGTCGTCNAGGCAGGCNATGAGG 180 consensus_3256#1 ------------------------------------------------------------ consensus_3256#0 GCGGCGAATNCGGCGNAGGAGGAGGAGGATGATCGGAGGAGGAGGAGGAAGAGGGAGGAG 240 consensus_3256#1 -------------------AGGAGGAGGATTNTCGGAGGAGGAGGAGNAAAAGGGAGGAG 41 *********** *************** ** ********* consensus_3256#0 GAGTCGCTGCGGGCTTTCATGTTCATCTCCTTCTGGGGCCCAAACTCCTNAGGCCACATC 300 consensus_3256#1 GAGTCNCTGCGGGCGTTCATGTTCATCTCCTTCTGGGGCCCNAACTCCTGAGGCCACATC 101 ***** ******** ************************** ******* ********** consensus_3256#0 CATTTCCATGTCCATTTTCTTGGGCTTTTGCTTGTAATTTTTGGNTTTCTTTAATTTCTT 360 consensus_3256#1 CATTTCCATGTCCATTTTCTTGGGCTTT-GCTTGTGATTTTTG--TTTTCTTGATTTCTT 158 **************************** ****** ******* *** ** ******* consensus_3256#0 TTCTTNCTGCCTTTCCTNGATCTCCATGGATCAAAGACGGTAATATTTTTTCCAACGGAA 420 consensus_3256#1 T-CTTCCTGCCTT-CCTCGATCTCCATGGATCAAANACGTGAATATTTTTGCCNACGGAA 216 * *** ******* *** ***************** *** ********* ** ****** consensus_3256#0 AAAGCATTTAATTTTAAAGGT---------------------------------- 441 consensus_3256#1 AAAGCATGTNATGTGAAGGTTTTTAGTTTTTTCAAAAAAAAAAAAAAAAAAAAAA 271 ******* * ** * ** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||