These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3258#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1977 fasta sequence [AATGCGGACGATCGATCGAACCACCCGGTTCTTGGATTACCGGGACAAACAACAATCATCATCACCTCGGGATTAATCATTTCAACCCTCCCCTTTTTGTTCCTTCTCGTGGCTCTCTCTGCGTGGGTGTTCTGCAGCGCCAATCCTGGATCATCATCGTTTGCTTCTGCACACGTCGCTCGAGGCCGCAGAAAGCTGCGTCCTTTACAGCTGGCCACGGTGGAGTTGATCGGTTGATGGCAGCGAGCGGCGGTGGGTCGCTGCTAGAGAGACGAAGCTCGGTGCGACGGTCGCAGAGTATGGTGAGCGAGGAGGGCCGGGGCACGCCGGCCGATGAGGATCTCGGCGGCGGCGGCACGCTCAAGATTGGCGCCGTGCTCGACAAGGACAGCGCGGCGCCCAAGTCGCGGCTCGCCAAGGACACCGGCGAACACGGCGGCGGAGGACCTTCCGAGATGGAGCTGATGAAGGAGAAGTTCGCCAAGCTGCTGCTCGGGGAGGACATGTCGGGGTCCGGGAAGGGCGTGCCGTCGGCGCTGGCCGTGTCCAACGCCATCACCAATCTTGCAGCTTCTGTGTTTGGTGAGCAACGGAAGCTGGAGCCCATGGCGCCGGACAGGAAGGGGAGGTGGAAGAAAGAGGTCGGCTGGCTTCTATCCGTCGCCGATCACATCGTCGAGTTCGTCGCGAAGAAACAAGTCTTGGACAACGGCGTTGAGATGGAGGTGATGGGCACGCAGCAGCGGAGAGATCTCCAGGCGAACATACCGGCGTTGCGCAAGATCGACACGATGCTCCTGGATTACCTGGACAACTTCAAGGATCGGAACGAGTTCTGGTACGTGAAGCGCGACTCGTGCTCGGATAGCGACGAGCAGAGATCAGACGAGAAATGGTGGATCCCGATCGTGAAGGTCCCGCCTGGCGGGCTCTCGCCGGCGTCCAGAGGGTGGCTCCAGCACCAGAAGGAGCTGGTGAACCAGGTGCTCAAGGCGGCCATGGCCATCAACGCCAACTGCCTCATGGAGATGGCCATCCCGGAATCCTACCTCGAATCCCTCCCCAAGAACGGGAGGGCGAGCCTCGGCGACGCGCTGTACCGGATCATCACCGACGTGGAGTTCGACCCGGACGTGTTCCTGTCGACGGTGGACCTTACGTCGGAGCACAAGATCCTGGACCTCAAGGACCGGATCGAGGCGTCGGTGATCATCTGGAACAGGAAGGTGCACAACAAGGACGGCAAGTCGGCGTGGGGATCGGCCGTCAGCCAGGAGAAGAGGGAGCAGTTCGAGGAGCGCGCGCAGACGCTCCTGCTCATCATCAAGCACCGGTACCCCGGCATCCCCCAGTCCACCCTCGACATCGCCAAGATACAGGAAAACAGGGACGTCGGGTTCGCCATCCTGGAGAGCTACTCCAGGGTGCTGGAGAGCTTGGCCTTCAACGTCATGTCCCGGATAGAGGACGTCCTCAACGCCGACGACCACGCCAGGGAGAAGGCCAAGAAGGAGGCGCCGCCGGCGCCGGCTATGGCCAACGACGCCGCGGAGCACCACCACCAGCAGGCTGGCGAGGTGGATGCCCCCTGCAAAATGACAGGGTCACCCAACGGCAGGACGCTGCTCGACTTCATGGATGACTGGAACGGTGACGCCGATAGGCCCTCGCCGACGGCGCCTGAGCCGGCCGCACAGGAGGACGGAAGGCTGATGAAGCTGCCCAACATCATGACGAACCTGAAGCAGACGTACATGGACAACCTGTTCGGGGCGCATAGAAGCCCACCAGGTCGCCATTAAAAAGTGGCACGATATTTTGCATGTATTATCACATAGTGTACATATATATTTTGATCAAACTGGGCTCTCGCTTGAGTAGCCCGCCGTTTTCGGCTTCTGGGTTTGTAGAGCTGAGAATCTTCTGTACCATTTCAAGGGGTTGAGGGGTTGACCAATGTATACGACAGAGACATCT] [+] EMBL AK070142 [AATGCGGACGATCGATCGAACCACCCGGTTCTTGGATTACCGGGACAAACAACAATCATCATCACCTCGGGATTAATCATTTCAACCCTCCCCTTTTTGTTCCTTCTCGTGGCTCTCTCTGCGTGGGTGTTCTGCAGCGCCAATCCTGGATCATCATCGTTTGCTTCTGCACACGTCGCTCGAGGCCGCAGAAAGCTGCGTCCTTTACAGCTGGCCACGGTGGAGTTGATCGGTTGATGGCAGCGAGCGGCGGTGGGTCGCTGCTAGAGAGACGAAGCTCGGTGCGACGGTCGCAGAGTATGGTGAGCGAGGAGGGCCGGGGCACGCCGGCCGATGAGGATCTCGGCGGCGGCGGCACGCTCAAGATTGGCGCCGTGCTCGACAAGGACAGCGCGGCGCCCAAGTCGCGGCTCGCCAAGGACACCGGCGAACACGGCGGCGGAGGACCTTCCGAGATGGAGCTGATGAAGGAGAAGTTCGCCAAGCTGCTGCTCGGGGAGGACATGTCGGGGTCCGGGAAGGGCGTGCCGTCGGCGCTGGCCGTGTCCAACGCCATCACCAATCTTGCAGCTTCTGTGTTTGGTGAGCAACGGAAGCTGGAGCCCATGGCGCCGGACAGGAAGGGGAGGTGGAAGAAAGAGGTCGGCTGGCTTCTATCCGTCGCCGATCACATCGTCGAGTTCGTCGCGAAGAAACAAGTCTTGGACAACGGCGTTGAGATGGAGGTGATGGGCACGCAGCAGCGGAGAGATCTCCAGGCGAACATACCGGCGTTGCGCAAGATCGACACGATGCTCCTGGATTACCTGGACAACTTCAAGGATCGGAACGAGTTCTGGTACGTGAAGCGCGACTCGTGCTCGGATAGCGACGAGCAGAGATCAGACGAGAAATGGTGGATCCCGATCGTGAAGGTCCCGCCTGGCGGGCTCTCGCCGGCGTCCAGAGGGTGGCTCCAGCACCAGAAGGAGCTGGTGAACCAGGTGCTCAAGGCGGCCATGGCCATCAACGCCAACTGCCTCATGGAGATGGCCATCCCGGAATCCTACCTCGAATCCCTCCCCAAGAACGGGAGGGCGAGCCTCGGCGACGCGCTGTACCGGATCATCACCGACGTGGAGTTCGACCCGGACGTGTTCCTGTCGACGGTGGACCTTACGTCGGAGCACAAGATCCTGGACCTCAAGGACCGGATCGAGGCGTCGGTGATCATCTGGAACAGGAAGGTGCACAACAAGGACGGCAAGTCGGCGTGGGGATCGGCCGTCAGCCAGGAGAAGAGGGAGCAGTTCGAGGAGCGCGCGCAGACGCTCCTGCTCATCATCAAGCACCGGTACCCCGGCATCCCCCAGTCCACCCTCGACATCGCCAAGATACAGGAAAACAGGGACGTCGGGTTCGCCATCCTGGAGAGCTACTCCAGGGTGCTGGAGAGCTTGGCCTTCAACGTCATGTCCCGGATAGAGGACGTCCTCAACGCCGACGACCACGCCAGGGAGAAGGCCAAGAAGGAGGCGCCGCCGGCGCCGGCTATGGCCAACGACGCCGCGGAGCACCACCACCAGCAGGCTGGCGAGGTGGATGCCCCCTGCAAAATGACAGGGTCACCCAACGGCAGGACGCTGCTCGACTTCATGGATGACTGGAACGGTGACGCCGATAGGCCCTCGCCGACGGCGCCTGAGCCGGCCGCACAGGAGGACGGAAGGCTGATGAAGCTGCCCAACATCATGACGAACCTGAAGCAGACGTACATGGACAACCTGTTCGGGGCGCATAGAAGCCCACCAGGTCGCCATTAAAAAGTGGCACGATATTTTGCATGTATTATCACATAGTGTACATATATATTTTGATCAAACTGGGCTCTCGCTTGAGTAGCCCGCCGTTTTCGGCTTCTGGGTTTGTAGAGCTGAGAATCTTCTGTACCATTTCAAGGGGTTGAGGGGTTGACCAATGTATACGACAGAGACATCT] consensusID : consensus_3258#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [GGGGCCNAATTGGGTTACCGGNCCCCCCCTTGGAGTTCGACCCAGNTCCCGGAACGCTGCTCGATTCATGGATGACTGGAAACGTTGAACGCCGATAGGCCCCTCGCCGACGGCGCCTGAACCCGGCCNCACAGGAGGACGGAAGGCTGATGAAGCTGCCCCAACATCATGACGAACCTGAAGCAGACGTACATGGACAACCTGTTCGGGGCGCATAGAAGCCCACCAGGTCGCCATTAAAAAGTGGCACGATATTTTGCATGTATTATCACATAGTGTACATATATATTTTGATCAAACTGGGCTCTCGCTTGAGTAGCCCGCCGTTTTCGGCTTCTGGGTTTGTAGAGCTGAGAATCTTCTGTACCATTTCAAGGGGTTGAGGGGTTGACCAATGTATACGACAGAGACATCTACTGACGTTCATGCAGGTGTGCAAGAAAAAA] [+] EMBL AU069857 [GGGGCCNAATTGGGTTACCGGNCCCCCCCTTGGAGTTCGACCCAGNTCCCGGAACGCTGCTCGATTCATGGATGACTGGAAACGTTGAACGCCGATAGGCCCCTCGCCGACGGCGCCTGAACCCGGCCNCACAGGAGGACGGAAGGCTGATGAAGCTGCCCCAACATCATGACGAACCTGAAGCAGACGTACATGGACAACCTGTTCGGGGCGCATAGAAGCCCACCAGGTCGCCATTAAAAAGTGGCACGATATTTTGCATGTATTATCACATAGTGTACATATATATTTTGATCAAACTGGGCTCTCGCTTGAGTAGCCCGCCGTTTTCGGCTTCTGGGTTTGTAGAGCTGAGAATCTTCTGTACCATTTCAAGGGGTTGAGGGGTTGACCAATGTATACGACAGAGACATCTACTGACGTTCATGCAGGTGTGCAAGAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3258#0 AATGCGGACGATCGATCGAACCACCCGGTTCTTGGATTACCGGGACAAACAACAATCATC 60 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 ATCACCTCGGGATTAATCATTTCAACCCTCCCCTTTTTGTTCCTTCTCGTGGCTCTCTCT 120 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 GCGTGGGTGTTCTGCAGCGCCAATCCTGGATCATCATCGTTTGCTTCTGCACACGTCGCT 180 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 CGAGGCCGCAGAAAGCTGCGTCCTTTACAGCTGGCCACGGTGGAGTTGATCGGTTGATGG 240 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 CAGCGAGCGGCGGTGGGTCGCTGCTAGAGAGACGAAGCTCGGTGCGACGGTCGCAGAGTA 300 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 TGGTGAGCGAGGAGGGCCGGGGCACGCCGGCCGATGAGGATCTCGGCGGCGGCGGCACGC 360 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 TCAAGATTGGCGCCGTGCTCGACAAGGACAGCGCGGCGCCCAAGTCGCGGCTCGCCAAGG 420 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 ACACCGGCGAACACGGCGGCGGAGGACCTTCCGAGATGGAGCTGATGAAGGAGAAGTTCG 480 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 CCAAGCTGCTGCTCGGGGAGGACATGTCGGGGTCCGGGAAGGGCGTGCCGTCGGCGCTGG 540 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 CCGTGTCCAACGCCATCACCAATCTTGCAGCTTCTGTGTTTGGTGAGCAACGGAAGCTGG 600 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 AGCCCATGGCGCCGGACAGGAAGGGGAGGTGGAAGAAAGAGGTCGGCTGGCTTCTATCCG 660 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 TCGCCGATCACATCGTCGAGTTCGTCGCGAAGAAACAAGTCTTGGACAACGGCGTTGAGA 720 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 TGGAGGTGATGGGCACGCAGCAGCGGAGAGATCTCCAGGCGAACATACCGGCGTTGCGCA 780 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 AGATCGACACGATGCTCCTGGATTACCTGGACAACTTCAAGGATCGGAACGAGTTCTGGT 840 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 ACGTGAAGCGCGACTCGTGCTCGGATAGCGACGAGCAGAGATCAGACGAGAAATGGTGGA 900 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 TCCCGATCGTGAAGGTCCCGCCTGGCGGGCTCTCGCCGGCGTCCAGAGGGTGGCTCCAGC 960 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 ACCAGAAGGAGCTGGTGAACCAGGTGCTCAAGGCGGCCATGGCCATCAACGCCAACTGCC 1020 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 TCATGGAGATGGCCATCCCGGAATCCTACCTCGAATCCCTCCCCAAGAACGGGAGGGCGA 1080 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 GCCTCGGCGACGCGCTGTACCGGATCATCACCGACGTGGAGTTCGACCCGGACGTGTTCC 1140 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 TGTCGACGGTGGACCTTACGTCGGAGCACAAGATCCTGGACCTCAAGGACCGGATCGAGG 1200 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 CGTCGGTGATCATCTGGAACAGGAAGGTGCACAACAAGGACGGCAAGTCGGCGTGGGGAT 1260 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 CGGCCGTCAGCCAGGAGAAGAGGGAGCAGTTCGAGGAGCGCGCGCAGACGCTCCTGCTCA 1320 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 TCATCAAGCACCGGTACCCCGGCATCCCCCAGTCCACCCTCGACATCGCCAAGATACAGG 1380 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 AAAACAGGGACGTCGGGTTCGCCATCCTGGAGAGCTACTCCAGGGTGCTGGAGAGCTTGG 1440 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 CCTTCAACGTCATGTCCCGGATAGAGGACGTCCTCAACGCCGACGACCACGCCAGGGAGA 1500 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 AGGCCAAGAAGGAGGCGCCGCCGGCGCCGGCTATGGCCAACGACGCCGCGGAGCACCACC 1560 consensus_3258#1 ------------------------------------------------------------ consensus_3258#0 ACCAGCAGGCTGGCGAGGTGGATGCCCCCTGCAAAATGACAGGGTCACCCAACGGCAGGA 1620 consensus_3258#1 ----GGGGCCNAATTGGGTTACCGGNCCCCCCC---TTGGAGTTCGACCCAGNTCCCGGA 53 * * * *** * *** * * ** ***** * *** consensus_3258#0 -CGCTGCTCGACTTCATGGATGACTGGAACGGT--GACGCCGATAGGCCC-TCGCCGACG 1676 consensus_3258#1 ACGCTGCTCGA-TTCATGGATGACTGGAAACGTTGAACGCCGATAGGCCCCTCGCCGACG 112 ********** ***************** ** ************** ********* consensus_3258#0 GCGCCTGAGCC-GGCCGCACAGGAGGACGGAAGGCTGATGAAGCTGCCC-AACATCATGA 1734 consensus_3258#1 GCGCCTGAACCCGGCCNCACAGGAGGACGGAAGGCTGATGAAGCTGCCCCAACATCATGA 172 ******** ** **** ******************************** ********** consensus_3258#0 CGAACCTGAAGCAGACGTACATGGACAACCTGTTCGGGGCGCATAGAAGCCCACCAGGTC 1794 consensus_3258#1 CGAACCTGAAGCAGACGTACATGGACAACCTGTTCGGGGCGCATAGAAGCCCACCAGGTC 232 ************************************************************ consensus_3258#0 GCCATTAAAAAGTGGCACGATATTTTGCATGTATTATCACATAGTGTACATATATATTTT 1854 consensus_3258#1 GCCATTAAAAAGTGGCACGATATTTTGCATGTATTATCACATAGTGTACATATATATTTT 292 ************************************************************ consensus_3258#0 GATCAAACTGGGCTCTCGCTTGAGTAGCCCGCCGTTTTCGGCTTCTGGGTTTGTAGAGCT 1914 consensus_3258#1 GATCAAACTGGGCTCTCGCTTGAGTAGCCCGCCGTTTTCGGCTTCTGGGTTTGTAGAGCT 352 ************************************************************ consensus_3258#0 GAGAATCTTCTGTACCATTTCAAGGGGTTGAGGGGTTGACCAATGTATACGACAGAGACA 1974 consensus_3258#1 GAGAATCTTCTGTACCATTTCAAGGGGTTGAGGGGTTGACCAATGTATACGACAGAGACA 412 ************************************************************ consensus_3258#0 TCT------------------------------- 1977 consensus_3258#1 TCTACTGACGTTCATGCAGGTGTGCAAGAAAAAA 446 *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||