|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_327#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2133 fasta sequence
[CCGGATCAATCCCCTTCTTCCTCCCGAGGCGAGGGTTTTGGCGAGGAGATCGAGCAGAGGATCTCTCTAGCCTCCCGCTCCGCCCAATCCACCGTAGCCGCGGCCCATTTCGTTGTCCGTCCAGCCGCGCGCCGCCGTGCCTTTTTCTTGGTTGCTGCGGTTCCAAGAAACCCCCGCCATGGCCTCCGATGGTAGTTTCTTCCGATACGGTGAGCGCCAGATAGCAGCTAAACCTGAAGATTGCCCAGCAATGTCATCAATGTTGTCATTGGAGGATCTCCCGGATGCATTGCTCGCAGAGATTGTAAAGAGGATTACCAACACAAGTGACCTGAAGTCCATTTCCCTTGTGTCAAAGCGTCTGTACACTATCGAGGCGGAGCAAAGAAGTTCTATCCGTGTTGGCTCTGACCTTTGTCCAGCGATAGATACCTTGTCAGCACTCTGTTCCCGATTCCCCAATTTGTTGGAAGTAGAGATGGACTACTCTGGTTGGAAATTTCACTGGAATCTGCTAGAAAAACATATTTTCTCATTGCACTTCCCTGTCCTGCGTGATCTCACCTTATACATTGATGATATTCGTATGGGTTGTCTAGCTTCTTGCAAAAATTTGATGTCCCTCAGGTTGAACTCTGTATCAGCGATAGGCTCATGTGGACTTCTCTCGGTGGCTGTTGGTTGCAAGAATTTAACTTCTCTCCACATTATTAAGTGCAACCATATTGTTGGCAGTGATAAGTGGCTGGAGTACATTGGCAGTGCTGGGTCACTGGAAGAACTTGTAGTGAAGAACTGCAAGAGAATCAGCCAGTATGATCTCCTAAAATTTGGCCCTGGATGGATGAAGCTCAAGAAGTTCGAGTTCAAGTTCAAGAGAAGTTTCAACACATATGAACCTCGTGACCCCTGTTATGTGGATAACTATCAGTATGGATATGATTTCTGCTGTGAAAGTTTGAGGGATGTCACTTTGGCTACGATTGTAACTAAACCAGAGATAGGACTTCGCTGTCTCCTGACAAAGTGCAAAGCATTAGAGAGACTCTGCCTTCACTATGTAATTGGCATAAGTGATCATGACATCATTACAATCTCCCAGAACTGCAGCAACCTTAGAAGCATCTCACTTTCTCAAGAGATGCTGCTCTGTGAAATACCTGGAGGCACAGGCGTAATGGCTAGGACACCACTGACTGATGACAGCCTCAATGCTCTAGCCCTGAGATCTCATATGCTTGAAGCTGTTGAGCTTATGTTTTATGGTTGTGCTCCTGATTGGCCATCTGAGATAGCCTTCACACAGGATGGCCTTGTGACACTCCTCCAGTCCTGTCCGATTCGTCATCTCGTGCTACGTGGTGCTAACTTCTTTGATGATGAAGGGATGGAGGCTCTCTCATGTGCACAATTCCTGGAGACACTGGAGCTTATGCAATGTGTTGCGGTAACTGATGTCGGGATGCGCTTTCTTGCACAAAGCCCATGTTTGAAGAATCTCACGCTGCAGATGTGTTACGAGGTTACTGATGATGGAGTGTGTGAGGTGGCTCATGCACGGGATTTGGAGTCTCTCACTGTTGAAAGCTGTAATCAGATTTCTGTAGAAGCTTTGCATGGGGCCGCCAAATCCGTTCACTACAAAGTTGATTGCCCAAGCTACTACGATCGATATAAAGATTAGGTACTACGTGTGATGAGTGAAAACTGGGATCATTTACTGCAACTGTGCTGTATACCATATTATATGATCTTGCCAATAACAATCTCAATTTGGCCTGTAAGCAGTACTACTGTTTAGCTTTGGGAGTGTCTGCAACTATCAACTCTTTTGTCGACGAAGCGCTACAGAAAGGTGGAAGTGGAACTACTGCCAATCGTCTCAGACTTTCAACATTTTCCTTTTGTGTATGCCACCTTCATTGTTATGGCTTACAAGAAACGTTTCAGGATATAATTGTGCCTACATCTTTAACAGACGATTATATGTTTCTATCACGTTTTGTTTCTGTGCCTACTCTAACCTCTGTGAACTGATCTTTTCGCTTCCTACAAAACTGGTCCGAAAGGCATTGGATCATTGGGTGTAGTCAACAATGTACACTGCATTACCTGCTTATAGTACAATATAAG]
[+] EMBL AK073020 [CCGGATCAATCCCCTTCTTCCTCCCGAGGCGAGGGTTTTGGCGAGGAGATCGAGCAGAGGATCTCTCTAGCCTCCCGCTCCGCCCAATCCACCGTAGCCGCGGCCCATTTCGTTGTCCGTCCAGCCGCGCGCCGCCGTGCCTTTTTCTTGGTTGCTGCGGTTCCAAGAAACCCCCGCCATGGCCTCCGATGGTAGTTTCTTCCGATACGGTGAGCGCCAGATAGCAGCTAAACCTGAAGATTGCCCAGCAATGTCATCAATGTTGTCATTGGAGGATCTCCCGGATGCATTGCTCGCAGAGATTGTAAAGAGGATTACCAACACAAGTGACCTGAAGTCCATTTCCCTTGTGTCAAAGCGTCTGTACACTATCGAGGCGGAGCAAAGAAGTTCTATCCGTGTTGGCTCTGACCTTTGTCCAGCGATAGATACCTTGTCAGCACTCTGTTCCCGATTCCCCAATTTGTTGGAAGTAGAGATGGACTACTCTGGTTGGAAATTTCACTGGAATCTGCTAGAAAAACATATTTTCTCATTGCACTTCCCTGTCCTGCGTGATCTCACCTTATACATTGATGATATTCGTATGGGTTGTCTAGCTTCTTGCAAAAATTTGATGTCCCTCAGGTTGAACTCTGTATCAGCGATAGGCTCATGTGGACTTCTCTCGGTGGCTGTTGGTTGCAAGAATTTAACTTCTCTCCACATTATTAAGTGCAACCATATTGTTGGCAGTGATAAGTGGCTGGAGTACATTGGCAGTGCTGGGTCACTGGAAGAACTTGTAGTGAAGAACTGCAAGAGAATCAGCCAGTATGATCTCCTAAAATTTGGCCCTGGATGGATGAAGCTCAAGAAGTTCGAGTTCAAGTTCAAGAGAAGTTTCAACACATATGAACCTCGTGACCCCTGTTATGTGGATAACTATCAGTATGGATATGATTTCTGCTGTGAAAGTTTGAGGGATGTCACTTTGGCTACGATTGTAACTAAACCAGAGATAGGACTTCGCTGTCTCCTGACAAAGTGCAAAGCATTAGAGAGACTCTGCCTTCACTATGTAATTGGCATAAGTGATCATGACATCATTACAATCTCCCAGAACTGCAGCAACCTTAGAAGCATCTCACTTTCTCAAGAGATGCTGCTCTGTGAAATACCTGGAGGCACAGGCGTAATGGCTAGGACACCACTGACTGATGACAGCCTCAATGCTCTAGCCCTGAGATCTCATATGCTTGAAGCTGTTGAGCTTATGTTTTATGGTTGTGCTCCTGATTGGCCATCTGAGATAGCCTTCACACAGGATGGCCTTGTGACACTCCTCCAGTCCTGTCCGATTCGTCATCTCGTGCTACGTGGTGCTAACTTCTTTGATGATGAAGGGATGGAGGCTCTCTCATGTGCACAATTCCTGGAGACACTGGAGCTTATGCAATGTGTTGCGGTAACTGATGTCGGGATGCGCTTTCTTGCACAAAGCCCATGTTTGAAGAATCTCACGCTGCAGATGTGTTACGAGGTTACTGATGATGGAGTGTGTGAGGTGGCTCATGCACGGGATTTGGAGTCTCTCACTGTTGAAAGCTGTAATCAGATTTCTGTAGAAGCTTTGCATGGGGCCGCCAAATCCGTTCACTACAAAGTTGATTGCCCAAGCTACTACGATCGATATAAAGATTAGGTACTACGTGTGATGAGTGAAAACTGGGATCATTTACTGCAACTGTGCTGTATACCATATTATATGATCTTGCCAATAACAATCTCAATTTGGCCTGTAAGCAGTACTACTGTTTAGCTTTGGGAGTGTCTGCAACTATCAACTCTTTTGTCGACGAAGCGCTACAGAAAGGTGGAAGTGGAACTACTGCCAATCGTCTCAGACTTTCAACATTTTCCTTTTGTGTATGCCACCTTCATTGTTATGGCTTACAAGAAACGTTTCAGGATATAATTGTGCCTACATCTTTAACAGACGATTATATGTTTCTATCACGTTTTGTTTCTGTGCCTACTCTAACCTCTGTGAACTGATCTTTTCGCTTCCTACAAAACTGGTCCGAAAGGCATTGGATCATTGGGTGTAGTCAACAATGTACACTGCATTACCTGCTTATAGTACAATATAAG]
consensusID : consensus_327#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[CCTTCCATGGCTTCCCGGATCAATCCCCTTTCTTCCTCCCGAGGCGAGGGTTTTGGCGAGGAGATCGAGCAGAGGACCTCTCTAGCCTCNCGCTCCGCCCAATCAACNGTAGCCGCGGCCCATTTCGTTGTCCGTCCAGCCGCGCGCCGCCGTGCCTTTTTCTTGGCTGCTGCGGTTCCAAGAAACCCCCGCCATGGCCTCCGATGGTAGTTTCTTCCGATACGGTGGTACTACGTGTGATGAGTGAAAACTGGGATCATTTACTGCAACTGTGCTGTATACCATATTATATGATCTTGCCAATAACAATCTCAATTTGGCCTGTAAGCAGTACTACTGTTTAGCTTTGGGAGTGTCTGCAACTATCAACTCTTTTGTCGACGAAGCGCTACAGAAAGGTGGAAGTGGAACTACTGCCAATCGTCTCAGACTTTCAACATTTTCCTTTTGTGTATGCCACCTTCATTGTTATGGCTTACAAGAAACGTTTCAGGATATAGTTGTGCCTACATCTTTAACAGACGATTATATGTTTCTATCACGTTTTGTTTCTGTGCCTACTCTAACCTCTGTGAACTGATCTTTTCGCTTCCTACAAAACTGGTCCGAAAGGCATTGGATCATTGGGTGTAGTCAACAATGTACACTGCATTACCTGCTTATAGTACAATATAAGATGTTTATTCAAAAAAA]
[-] EMBL CA760419 [CCTTCCATGGCTTCCCGGATCAATCCCCTTTCTTCCTCCCGAGGCGAGGGTTTTGGCGAGGAGATCGAGCAGAGGACCTCTCTAGCCTCNCGCTCCGCCCAATCAACNGTAGCCGCGGCCCATTTCGTTGTCCGTCCAGCCGCGCGCCGCCGTGCCTTTTTCTTGGCTGCTGCGGTTCCAAGAAACCCCCGCCATGGCCTCCGATGGTAGTTTCTTCCGATACGGTGGTACTACGTGTGATGAGTGAAAACTGGGATCATTTACTGCAACTGTGCTGTATACCATATTATATGATCTTGCCAATAACAATCTCAATTTGGCCTGTAAGCAGTACTACTGTTTAGCTTTGGGAGTGTCTGCAACTATCAACTCTTTTGTCGACGAAGCGCTACAGAAAGGTGGAAGTGGAACTACTGCCAATCGTCTCAGACTTTCAACATTTTCCTTTTGTGTATGCCACCTTCATTGTTATGGCTTACAAGAAACGTTTCAGGATATAGTTGTGCCTACATCTTTAACAGACGATTATATGTTTCTATCACGTTTTGTTTCTGTGCCTACTCTAACCTCTGTGAACTGATCTTTTCGCTTCCTACAAAACTGGTCCGAAAGGCATTGGATCATTGGGTGTAGTCAACAATGTACACTGCATTACCTGCTTATAGTACAATATAAGATGTTTATTCAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_327#0 CCGGATCAATCCCCTTCTTCCTCCCGAGGCGAGGGTTTTGGCGAGGAGATCGAGCAGAGG 60
consensus_327#1 ------------------------------------------------------------
consensus_327#0 ATCTCTCTAGCCTCCCGCTCCGCCCAATCCACCGTAGCCGCGGCCCATTTCGTTGTCCGT 120
consensus_327#1 ------------------------------------------------------------
consensus_327#0 CCAGCCGCGCGCCGCCGTGCCTTTTTCTTGGTTGCTGCGGTTCCAAGAAACCCCCGCCAT 180
consensus_327#1 ------------------------------------------------------------
consensus_327#0 GGCCTCCGATGGTAGTTTCTTCCGATACGGTGAGCGCCAGATAGCAGCTAAACCTGAAGA 240
consensus_327#1 ------------------------------------------------------------
consensus_327#0 TTGCCCAGCAATGTCATCAATGTTGTCATTGGAGGATCTCCCGGATGCATTGCTCGCAGA 300
consensus_327#1 ------------------------------------------------------------
consensus_327#0 GATTGTAAAGAGGATTACCAACACAAGTGACCTGAAGTCCATTTCCCTTGTGTCAAAGCG 360
consensus_327#1 ------------------------------------------------------------
consensus_327#0 TCTGTACACTATCGAGGCGGAGCAAAGAAGTTCTATCCGTGTTGGCTCTGACCTTTGTCC 420
consensus_327#1 ------------------------------------------------------------
consensus_327#0 AGCGATAGATACCTTGTCAGCACTCTGTTCCCGATTCCCCAATTTGTTGGAAGTAGAGAT 480
consensus_327#1 ------------------------------------------------------------
consensus_327#0 GGACTACTCTGGTTGGAAATTTCACTGGAATCTGCTAGAAAAACATATTTTCTCATTGCA 540
consensus_327#1 ------------------------------------------------------------
consensus_327#0 CTTCCCTGTCCTGCGTGATCTCACCTTATACATTGATGATATTCGTATGGGTTGTCTAGC 600
consensus_327#1 ------------------------------------------------------------
consensus_327#0 TTCTTGCAAAAATTTGATGTCCCTCAGGTTGAACTCTGTATCAGCGATAGGCTCATGTGG 660
consensus_327#1 ------------------------------------------------------------
consensus_327#0 ACTTCTCTCGGTGGCTGTTGGTTGCAAGAATTTAACTTCTCTCCACATTATTAAGTGCAA 720
consensus_327#1 ------------------------------------------------------------
consensus_327#0 CCATATTGTTGGCAGTGATAAGTGGCTGGAGTACATTGGCAGTGCTGGGTCACTGGAAGA 780
consensus_327#1 ------------------------------------------------------------
consensus_327#0 ACTTGTAGTGAAGAACTGCAAGAGAATCAGCCAGTATGATCTCCTAAAATTTGGCCCTGG 840
consensus_327#1 ------------------------------------------------------------
consensus_327#0 ATGGATGAAGCTCAAGAAGTTCGAGTTCAAGTTCAAGAGAAGTTTCAACACATATGAACC 900
consensus_327#1 ------------------------------------------------------------
consensus_327#0 TCGTGACCCCTGTTATGTGGATAACTATCAGTATGGATATGATTTCTGCTGTGAAAGTTT 960
consensus_327#1 ------------------------------------------------------------
consensus_327#0 GAGGGATGTCACTTTGGCTACGATTGTAACTAAACCAGAGATAGGACTTCGCTGTCTCCT 1020
consensus_327#1 ------------------------------------------------------------
consensus_327#0 GACAAAGTGCAAAGCATTAGAGAGACTCTGCCTTCACTATGTAATTGGCATAAGTGATCA 1080
consensus_327#1 ------------------------------------------------------------
consensus_327#0 TGACATCATTACAATCTCCCAGAACTGCAGCAACCTTAGAAGCATCTCACTTTCTCAAGA 1140
consensus_327#1 ------------------------------------------------------------
consensus_327#0 GATGCTGCTCTGTGAAATACCTGGAGGCACAGGCGTAATGGCTAGGACACCACTGACTGA 1200
consensus_327#1 ------------------------------------------------------------
consensus_327#0 TGACAGCCTCAATGCTCTAGCCCTGAGATCTCATATGCTTGAAGCTGTTGAGCTTATGTT 1260
consensus_327#1 ------------------------------------------------------------
consensus_327#0 TTATGGTTGTGCTCCTGATTGGCCATCTGAGATAGCCTTCACACAGGATGGCCTTGTGAC 1320
consensus_327#1 ------------------------------------------------------------
consensus_327#0 ACTCCTCCAGTCCTGTCCGATTCGTCATCTCGTGCTACGTGGTGCTAACTTCTTTGATGA 1380
consensus_327#1 ------------------------------------------------------------
consensus_327#0 TGAAGGGATGGAGGCTCTCTCATGTGCACAATTCCTGGAGACACTGGAGCTTATGCAATG 1440
consensus_327#1 ----------------------------------------------------------CC 2
consensus_327#0 TGTTGCGGTAACTGATGTCGGGATGCGCTTTCTTGCACAAAGCCCATGTTTGAAGAATCT 1500
consensus_327#1 TTCCATGGCTTCCCGGATCAATCCCCTTTCTTCCTCCCGAGGCGAGGGTTTTGGCGAGGA 62
* ** * ** * * * * * * ** **** *
consensus_327#0 CACGCTGCAGATGTGTTACGAGGTTACTGATGATGGAGTGTGTGAGGTGGCTCATGCACG 1560
consensus_327#1 GATCGAGCAGAGGACCTCTCTAGCCTCNCGCTCCGCCCAATCAACNGTAGCCGCGGCCCA 122
* ***** * * * * * * ** ** ** *
consensus_327#0 GGATTTGGAGTCTCTCACTGTTGAAAGCTGTAATCAGATTTCTGTAGAAGCTTTGCATGG 1620
consensus_327#1 --TTTCGTTGTCCGTC-CAGCCGCGCGCCGCCGTGCCTTTTTCTTGGCTGCT----GCGG 175
** * *** ** * * * ** * * *** * * *** **
consensus_327#0 GGCCGCCAAATCCGTTCACTACAAAGTTGATTGCCCAAGCTACTACGATCGATATAAAGA 1680
consensus_327#1 TTCCAAGAAACCC--CCGCCATGGCCTCCGATGGT--AGTTTCTTC---CGATACGGTG- 227
** *** ** * * * * ** ** * ** * ***** *
consensus_327#0 TTAGGTACTACGTGTGATGAGTGAAAACTGGGATCATTTACTGCAACTGTGCTGTATACC 1740
consensus_327#1 ----GTACTACGTGTGATGAGTGAAAACTGGGATCATTTACTGCAACTGTGCTGTATACC 283
********************************************************
consensus_327#0 ATATTATATGATCTTGCCAATAACAATCTCAATTTGGCCTGTAAGCAGTACTACTGTTTA 1800
consensus_327#1 ATATTATATGATCTTGCCAATAACAATCTCAATTTGGCCTGTAAGCAGTACTACTGTTTA 343
************************************************************
consensus_327#0 GCTTTGGGAGTGTCTGCAACTATCAACTCTTTTGTCGACGAAGCGCTACAGAAAGGTGGA 1860
consensus_327#1 GCTTTGGGAGTGTCTGCAACTATCAACTCTTTTGTCGACGAAGCGCTACAGAAAGGTGGA 403
************************************************************
consensus_327#0 AGTGGAACTACTGCCAATCGTCTCAGACTTTCAACATTTTCCTTTTGTGTATGCCACCTT 1920
consensus_327#1 AGTGGAACTACTGCCAATCGTCTCAGACTTTCAACATTTTCCTTTTGTGTATGCCACCTT 463
************************************************************
consensus_327#0 CATTGTTATGGCTTACAAGAAACGTTTCAGGATATAATTGTGCCTACATCTTTAACAGAC 1980
consensus_327#1 CATTGTTATGGCTTACAAGAAACGTTTCAGGATATAGTTGTGCCTACATCTTTAACAGAC 523
************************************ ***********************
consensus_327#0 GATTATATGTTTCTATCACGTTTTGTTTCTGTGCCTACTCTAACCTCTGTGAACTGATCT 2040
consensus_327#1 GATTATATGTTTCTATCACGTTTTGTTTCTGTGCCTACTCTAACCTCTGTGAACTGATCT 583
************************************************************
consensus_327#0 TTTCGCTTCCTACAAAACTGGTCCGAAAGGCATTGGATCATTGGGTGTAGTCAACAATGT 2100
consensus_327#1 TTTCGCTTCCTACAAAACTGGTCCGAAAGGCATTGGATCATTGGGTGTAGTCAACAATGT 643
************************************************************
consensus_327#0 ACACTGCATTACCTGCTTATAGTACAATATAAG----------------- 2133
consensus_327#1 ACACTGCATTACCTGCTTATAGTACAATATAAGATGTTTATTCAAAAAAA 693
*********************************
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||