cluster # 3270

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Oryza sativa
cluster # 3270 cluster # 3270 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3270#0 length = 274 sequences # 1

consensus_3270#1 length = 178 sequences # 1

consensusID : consensus_3270#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 274
fasta sequence

                              [AAGAAACTTGGAAGTGAGCACTGCATGTGTTACTNATGCACTCCTTTTTGTATCATCGGCCTTCCTGAAGTAGGAAATCTCCATGTTGTCATTTTCTTGTTAGCCACTAGTCTTTCAACAATCAAAATGATTCCCACTTATAATAGCTTGTACAATCCATCGGCATCTTCCTTTTTTCAGAGTTTTTTTTCAGAAGTGGAAATGTAGTCCTTTGCTGGGGTTGCTAATAGTTAATATAAGGGTTGTAGTGTNAGGTGTAGGACCATTTTTTTGC]

[+] EMBL OSC8411              [AAGAAACTTGGAAGTGAGCACTGCATGTGTTACTNATGCACTCCTTTTTGTATCATCGGCCTTCCTGAAGTAGGAAATCTCCATGTTGTCATTTTCTTGTTAGCCACTAGTCTTTCAACAATCAAAATGATTCCCACTTATAATAGCTTGTACAATCCATCGGCATCTTCCTTTTTTCAGAGTTTTTTTTCAGAAGTGGAAATGTAGTCCTTTGCTGGGGTTGCTAATAGTTAATATAAGGGTTGTAGTGTNAGGTGTAGGACCATTTTTTTGC]




>consensus_3270#0
AAGAAACTTGGAAGTGAGCACTGCATGTGTTACTNATGCACTCCTTTTTGTATCATCGGC
CTTCCTGAAGTAGGAAATCTCCATGTTGTCATTTTCTTGTTAGCCACTAGTCTTTCAACA
ATCAAAATGATTCCCACTTATAATAGCTTGTACAATCCATCGGCATCTTCCTTTTTTCAG
AGTTTTTTTTCAGAAGTGGAAATGTAGTCCTTTGCTGGGGTTGCTAATAGTTAATATAAG
GGTTGTAGTGTNAGGTGTAGGACCATTTTTTTGC

consensusID : consensus_3270#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 178
fasta sequence

                              [AAGAAACTTGGAAGTGAGCACTGCATGTGTTACTTATGCACTCCTTTTTGTATCATCGGCCTTCCTGAAGTAGGAAATCTCCATGTTGTCATTTTCTTGTTAGCCACTAGTCTTTCAACAATCAAAATGATTCCCACTTATAATAGCTTGTACAATCCATCGGNATCAAAAAAAAAAA]

[+] EMBL AU088687             [AAGAAACTTGGAAGTGAGCACTGCATGTGTTACTTATGCACTCCTTTTTGTATCATCGGCCTTCCTGAAGTAGGAAATCTCCATGTTGTCATTTTCTTGTTAGCCACTAGTCTTTCAACAATCAAAATGATTCCCACTTATAATAGCTTGTACAATCCATCGGNATCAAAAAAAAAAA]




>consensus_3270#1
AAGAAACTTGGAAGTGAGCACTGCATGTGTTACTTATGCACTCCTTTTTGTATCATCGGC
CTTCCTGAAGTAGGAAATCTCCATGTTGTCATTTTCTTGTTAGCCACTAGTCTTTCAACA
ATCAAAATGATTCCCACTTATAATAGCTTGTACAATCCATCGGNATCAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3270#0      AAGAAACTTGGAAGTGAGCACTGCATGTGTTACTNATGCACTCCTTTTTGTATCATCGGC 60
consensus_3270#1      AAGAAACTTGGAAGTGAGCACTGCATGTGTTACTTATGCACTCCTTTTTGTATCATCGGC 60
                      ********************************** *************************

consensus_3270#0      CTTCCTGAAGTAGGAAATCTCCATGTTGTCATTTTCTTGTTAGCCACTAGTCTTTCAACA 120
consensus_3270#1      CTTCCTGAAGTAGGAAATCTCCATGTTGTCATTTTCTTGTTAGCCACTAGTCTTTCAACA 120
                      ************************************************************

consensus_3270#0      ATCAAAATGATTCCCACTTATAATAGCTTGTACAATCCATCGGCATCTTCCTTTTTTCAG 180
consensus_3270#1      ATCAAAATGATTCCCACTTATAATAGCTTGTACAATCCATCGGNATCAAAA----AAAAA 176
                      ******************************************* ***           * 

consensus_3270#0      AGTTTTTTTTCAGAAGTGGAAATGTAGTCCTTTGCTGGGGTTGCTAATAGTTAATATAAG 240
consensus_3270#1      AA---------------------------------------------------------- 178
                      *                                                           

consensus_3270#0      GGTTGTAGTGTNAGGTGTAGGACCATTTTTTTGC 274
consensus_3270#1      ----------------------------------