cluster # 3277

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Oryza sativa
cluster # 3277 cluster # 3277 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3277#0 length = 558 sequences # 1

consensus_3277#1 length = 531 sequences # 1

consensusID : consensus_3277#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 558
fasta sequence

                              [GGTGCTCCTGGAGACACTGAGGCTGTACAACCCGGCGCTCTTCATCCAGAGGAAGCCCACGGCGGACATCACGGTGGGATCCCGCACGCGCTCCTGTCCTTCTCGATCGGGCCGAGGTCGTGCATCGGCCAGGGCTTCGCGATGCTGGAGGCGAAGGCGGCCATGGCCGCGATGCTGCGGAGGCTCTCGTTCCGCGTCTCCCCCGGGTACGTGCACGCGCCCGTGGATTTGATCACGCTCAAGCCCAAGTTTGGGCTTCCGGTGATCGTGAGGCTGCCGGATGCATGAAGTGGGGGTGTGTTTCGATCACGCGTATAGCAATAATAAAAACCAGTCAATAGTAATACCCTACGCTTTGCTGCGGAATATATGTTTATGTTTAAATAGCGTGGAAATGATGTGAAGATGATGAGTTGATATTGCTTGCATGTTAAGTTCTAAAAATACAACAAAATTGTAAATGTTGTGCCGTGTTTGCGTGAGATTGAAATCGGTAAATGATGTGTCATGGTTGTATGAGATTTAAGATACTCTAAATAATAATTGCTAGTGGATGAT]

[+] EMBL AK107816             [GGTGCTCCTGGAGACACTGAGGCTGTACAACCCGGCGCTCTTCATCCAGAGGAAGCCCACGGCGGACATCACGGTGGGATCCCGCACGCGCTCCTGTCCTTCTCGATCGGGCCGAGGTCGTGCATCGGCCAGGGCTTCGCGATGCTGGAGGCGAAGGCGGCCATGGCCGCGATGCTGCGGAGGCTCTCGTTCCGCGTCTCCCCCGGGTACGTGCACGCGCCCGTGGATTTGATCACGCTCAAGCCCAAGTTTGGGCTTCCGGTGATCGTGAGGCTGCCGGATGCATGAAGTGGGGGTGTGTTTCGATCACGCGTATAGCAATAATAAAAACCAGTCAATAGTAATACCCTACGCTTTGCTGCGGAATATATGTTTATGTTTAAATAGCGTGGAAATGATGTGAAGATGATGAGTTGATATTGCTTGCATGTTAAGTTCTAAAAATACAACAAAATTGTAAATGTTGTGCCGTGTTTGCGTGAGATTGAAATCGGTAAATGATGTGTCATGGTTGTATGAGATTTAAGATACTCTAAATAATAATTGCTAGTGGATGAT]




>consensus_3277#0
GGTGCTCCTGGAGACACTGAGGCTGTACAACCCGGCGCTCTTCATCCAGAGGAAGCCCAC
GGCGGACATCACGGTGGGATCCCGCACGCGCTCCTGTCCTTCTCGATCGGGCCGAGGTCG
TGCATCGGCCAGGGCTTCGCGATGCTGGAGGCGAAGGCGGCCATGGCCGCGATGCTGCGG
AGGCTCTCGTTCCGCGTCTCCCCCGGGTACGTGCACGCGCCCGTGGATTTGATCACGCTC
AAGCCCAAGTTTGGGCTTCCGGTGATCGTGAGGCTGCCGGATGCATGAAGTGGGGGTGTG
TTTCGATCACGCGTATAGCAATAATAAAAACCAGTCAATAGTAATACCCTACGCTTTGCT
GCGGAATATATGTTTATGTTTAAATAGCGTGGAAATGATGTGAAGATGATGAGTTGATAT
TGCTTGCATGTTAAGTTCTAAAAATACAACAAAATTGTAAATGTTGTGCCGTGTTTGCGT
GAGATTGAAATCGGTAAATGATGTGTCATGGTTGTATGAGATTTAAGATACTCTAAATAA
TAATTGCTAGTGGATGAT

consensusID : consensus_3277#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 531
fasta sequence

                              [AGTTCTGGGGCACTGTACGCCGGCGAGTTCAACCCCTGAGTTCGGACGGCGGCTAGGCGCGCGCGCGGGGATCCCGCACGCGCTCCTGTCCTTCTCGATCGGCCGAGGTCGTGCATCGGCCAGGGCTTCGCGATGCTGGAGGCGAAGGTGGCCATGCCGCGATGCTGCGGAGGCTCTCGTTCCGCGTCTCCCCCGGGTACGTGCACGCGCCCGTGGATTTGATCACGCTCAAGCCCAAGTTTGGGCTTCCGGTGATCGTGAGGCTGCTGGATGCATGAAGTGGGGGTGTGTTTCGATCACGTGTATAGCAATAATAAAAACCAGTCAATAGTAATACCCTACGCTTTGCTGCGGAATATGCGTATATGTTTAAATAGCGTGGAAACGATGTGAAGATGATGACTTGATATTGCTTGCATGTTAAGTTCTAAAAATACAACAAATTGTAAATGTTGTGCCGTGTTTGCATGAGATTGAAATCGGTAAATGATGTGTCATGGTTGTATGAGATTTAAGATACTCTAAAAAAAA]

[+] EMBL BI801204             [AGTTCTGGGGCACTGTACGCCGGCGAGTTCAACCCCTGAGTTCGGACGGCGGCTAGGCGCGCGCGCGGGGATCCCGCACGCGCTCCTGTCCTTCTCGATCGGCCGAGGTCGTGCATCGGCCAGGGCTTCGCGATGCTGGAGGCGAAGGTGGCCATGCCGCGATGCTGCGGAGGCTCTCGTTCCGCGTCTCCCCCGGGTACGTGCACGCGCCCGTGGATTTGATCACGCTCAAGCCCAAGTTTGGGCTTCCGGTGATCGTGAGGCTGCTGGATGCATGAAGTGGGGGTGTGTTTCGATCACGTGTATAGCAATAATAAAAACCAGTCAATAGTAATACCCTACGCTTTGCTGCGGAATATGCGTATATGTTTAAATAGCGTGGAAACGATGTGAAGATGATGACTTGATATTGCTTGCATGTTAAGTTCTAAAAATACAACAAATTGTAAATGTTGTGCCGTGTTTGCATGAGATTGAAATCGGTAAATGATGTGTCATGGTTGTATGAGATTTAAGATACTCTAAAAAAAA]




>consensus_3277#1
AGTTCTGGGGCACTGTACGCCGGCGAGTTCAACCCCTGAGTTCGGACGGCGGCTAGGCGC
GCGCGCGGGGATCCCGCACGCGCTCCTGTCCTTCTCGATCGGCCGAGGTCGTGCATCGGC
CAGGGCTTCGCGATGCTGGAGGCGAAGGTGGCCATGCCGCGATGCTGCGGAGGCTCTCGT
TCCGCGTCTCCCCCGGGTACGTGCACGCGCCCGTGGATTTGATCACGCTCAAGCCCAAGT
TTGGGCTTCCGGTGATCGTGAGGCTGCTGGATGCATGAAGTGGGGGTGTGTTTCGATCAC
GTGTATAGCAATAATAAAAACCAGTCAATAGTAATACCCTACGCTTTGCTGCGGAATATG
CGTATATGTTTAAATAGCGTGGAAACGATGTGAAGATGATGACTTGATATTGCTTGCATG
TTAAGTTCTAAAAATACAACAAATTGTAAATGTTGTGCCGTGTTTGCATGAGATTGAAAT
CGGTAAATGATGTGTCATGGTTGTATGAGATTTAAGATACTCTAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3277#0      GGTGCTCCTGGAGACACTG-AGGCTGTACAACCCGGCGCTCTTCATCCAGAGGAAGCCCA 59
consensus_3277#1      ---AGTTCTGG-GGCACTGTACGCCGGCGAGTTCAAC-CCCTGAGTTCGGACGGCGGCTA 55
                           * **** * ***** * ** *   *   *  * * **   * * ** *  * * *

consensus_3277#0      CGGCGGACATCACGGTGGGATCCCGCACGCGCTCCTGTCCTTCTCGATCGGGCCGAGGTC 119
consensus_3277#1      -GGCGCG---CGCGCGGGGATCCCGCACGCGCTCCTGTCCTTCTCGATCGG-CCGAGGTC 110
                       ****     * **  *********************************** ********

consensus_3277#0      GTGCATCGGCCAGGGCTTCGCGATGCTGGAGGCGAAGGCGGCCATGGCCGCGATGCTGCG 179
consensus_3277#1      GTGCATCGGCCAGGGCTTCGCGATGCTGGAGGCGAAGGTGGCCATG-CCGCGATGCTGCG 169
                      ************************************** ******* *************

consensus_3277#0      GAGGCTCTCGTTCCGCGTCTCCCCCGGGTACGTGCACGCGCCCGTGGATTTGATCACGCT 239
consensus_3277#1      GAGGCTCTCGTTCCGCGTCTCCCCCGGGTACGTGCACGCGCCCGTGGATTTGATCACGCT 229
                      ************************************************************

consensus_3277#0      CAAGCCCAAGTTTGGGCTTCCGGTGATCGTGAGGCTGCCGGATGCATGAAGTGGGGGTGT 299
consensus_3277#1      CAAGCCCAAGTTTGGGCTTCCGGTGATCGTGAGGCTGCTGGATGCATGAAGTGGGGGTGT 289
                      ************************************** *********************

consensus_3277#0      GTTTCGATCACGCGTATAGCAATAATAAAAACCAGTCAATAGTAATACCCTACGCTTTGC 359
consensus_3277#1      GTTTCGATCACGTGTATAGCAATAATAAAAACCAGTCAATAGTAATACCCTACGCTTTGC 349
                      ************ ***********************************************

consensus_3277#0      TGCGGAATATATGTTTATGTTTAAATAGCGTGGAAATGATGTGAAGATGATGAGTTGATA 419
consensus_3277#1      TGCGGAATATGCGTATATGTTTAAATAGCGTGGAAACGATGTGAAGATGATGACTTGATA 409
                      **********  ** ********************* **************** ******

consensus_3277#0      TTGCTTGCATGTTAAGTTCTAAAAATACAACAAAATTGTAAATGTTGTGCCGTGTTTGCG 479
consensus_3277#1      TTGCTTGCATGTTAAGTTCTAAAAATACAACAAA-TTGTAAATGTTGTGCCGTGTTTGCA 468
                      ********************************** ************************ 

consensus_3277#0      TGAGATTGAAATCGGTAAATGATGTGTCATGGTTGTATGAGATTTAAGATACTCTAAATA 539
consensus_3277#1      TGAGATTGAAATCGGTAAATGATGTGTCATGGTTGTATGAGATTTAAGATACTCTAAAAA 528
                      ********************************************************** *

consensus_3277#0      ATAATTGCTAGTGGATGAT 558
consensus_3277#1      AAA---------------- 531
                      * *