These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3277#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence [GGTGCTCCTGGAGACACTGAGGCTGTACAACCCGGCGCTCTTCATCCAGAGGAAGCCCACGGCGGACATCACGGTGGGATCCCGCACGCGCTCCTGTCCTTCTCGATCGGGCCGAGGTCGTGCATCGGCCAGGGCTTCGCGATGCTGGAGGCGAAGGCGGCCATGGCCGCGATGCTGCGGAGGCTCTCGTTCCGCGTCTCCCCCGGGTACGTGCACGCGCCCGTGGATTTGATCACGCTCAAGCCCAAGTTTGGGCTTCCGGTGATCGTGAGGCTGCCGGATGCATGAAGTGGGGGTGTGTTTCGATCACGCGTATAGCAATAATAAAAACCAGTCAATAGTAATACCCTACGCTTTGCTGCGGAATATATGTTTATGTTTAAATAGCGTGGAAATGATGTGAAGATGATGAGTTGATATTGCTTGCATGTTAAGTTCTAAAAATACAACAAAATTGTAAATGTTGTGCCGTGTTTGCGTGAGATTGAAATCGGTAAATGATGTGTCATGGTTGTATGAGATTTAAGATACTCTAAATAATAATTGCTAGTGGATGAT] [+] EMBL AK107816 [GGTGCTCCTGGAGACACTGAGGCTGTACAACCCGGCGCTCTTCATCCAGAGGAAGCCCACGGCGGACATCACGGTGGGATCCCGCACGCGCTCCTGTCCTTCTCGATCGGGCCGAGGTCGTGCATCGGCCAGGGCTTCGCGATGCTGGAGGCGAAGGCGGCCATGGCCGCGATGCTGCGGAGGCTCTCGTTCCGCGTCTCCCCCGGGTACGTGCACGCGCCCGTGGATTTGATCACGCTCAAGCCCAAGTTTGGGCTTCCGGTGATCGTGAGGCTGCCGGATGCATGAAGTGGGGGTGTGTTTCGATCACGCGTATAGCAATAATAAAAACCAGTCAATAGTAATACCCTACGCTTTGCTGCGGAATATATGTTTATGTTTAAATAGCGTGGAAATGATGTGAAGATGATGAGTTGATATTGCTTGCATGTTAAGTTCTAAAAATACAACAAAATTGTAAATGTTGTGCCGTGTTTGCGTGAGATTGAAATCGGTAAATGATGTGTCATGGTTGTATGAGATTTAAGATACTCTAAATAATAATTGCTAGTGGATGAT] consensusID : consensus_3277#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence [AGTTCTGGGGCACTGTACGCCGGCGAGTTCAACCCCTGAGTTCGGACGGCGGCTAGGCGCGCGCGCGGGGATCCCGCACGCGCTCCTGTCCTTCTCGATCGGCCGAGGTCGTGCATCGGCCAGGGCTTCGCGATGCTGGAGGCGAAGGTGGCCATGCCGCGATGCTGCGGAGGCTCTCGTTCCGCGTCTCCCCCGGGTACGTGCACGCGCCCGTGGATTTGATCACGCTCAAGCCCAAGTTTGGGCTTCCGGTGATCGTGAGGCTGCTGGATGCATGAAGTGGGGGTGTGTTTCGATCACGTGTATAGCAATAATAAAAACCAGTCAATAGTAATACCCTACGCTTTGCTGCGGAATATGCGTATATGTTTAAATAGCGTGGAAACGATGTGAAGATGATGACTTGATATTGCTTGCATGTTAAGTTCTAAAAATACAACAAATTGTAAATGTTGTGCCGTGTTTGCATGAGATTGAAATCGGTAAATGATGTGTCATGGTTGTATGAGATTTAAGATACTCTAAAAAAAA] [+] EMBL BI801204 [AGTTCTGGGGCACTGTACGCCGGCGAGTTCAACCCCTGAGTTCGGACGGCGGCTAGGCGCGCGCGCGGGGATCCCGCACGCGCTCCTGTCCTTCTCGATCGGCCGAGGTCGTGCATCGGCCAGGGCTTCGCGATGCTGGAGGCGAAGGTGGCCATGCCGCGATGCTGCGGAGGCTCTCGTTCCGCGTCTCCCCCGGGTACGTGCACGCGCCCGTGGATTTGATCACGCTCAAGCCCAAGTTTGGGCTTCCGGTGATCGTGAGGCTGCTGGATGCATGAAGTGGGGGTGTGTTTCGATCACGTGTATAGCAATAATAAAAACCAGTCAATAGTAATACCCTACGCTTTGCTGCGGAATATGCGTATATGTTTAAATAGCGTGGAAACGATGTGAAGATGATGACTTGATATTGCTTGCATGTTAAGTTCTAAAAATACAACAAATTGTAAATGTTGTGCCGTGTTTGCATGAGATTGAAATCGGTAAATGATGTGTCATGGTTGTATGAGATTTAAGATACTCTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3277#0 GGTGCTCCTGGAGACACTG-AGGCTGTACAACCCGGCGCTCTTCATCCAGAGGAAGCCCA 59 consensus_3277#1 ---AGTTCTGG-GGCACTGTACGCCGGCGAGTTCAAC-CCCTGAGTTCGGACGGCGGCTA 55 * **** * ***** * ** * * * * * ** * * ** * * * * consensus_3277#0 CGGCGGACATCACGGTGGGATCCCGCACGCGCTCCTGTCCTTCTCGATCGGGCCGAGGTC 119 consensus_3277#1 -GGCGCG---CGCGCGGGGATCCCGCACGCGCTCCTGTCCTTCTCGATCGG-CCGAGGTC 110 **** * ** *********************************** ******** consensus_3277#0 GTGCATCGGCCAGGGCTTCGCGATGCTGGAGGCGAAGGCGGCCATGGCCGCGATGCTGCG 179 consensus_3277#1 GTGCATCGGCCAGGGCTTCGCGATGCTGGAGGCGAAGGTGGCCATG-CCGCGATGCTGCG 169 ************************************** ******* ************* consensus_3277#0 GAGGCTCTCGTTCCGCGTCTCCCCCGGGTACGTGCACGCGCCCGTGGATTTGATCACGCT 239 consensus_3277#1 GAGGCTCTCGTTCCGCGTCTCCCCCGGGTACGTGCACGCGCCCGTGGATTTGATCACGCT 229 ************************************************************ consensus_3277#0 CAAGCCCAAGTTTGGGCTTCCGGTGATCGTGAGGCTGCCGGATGCATGAAGTGGGGGTGT 299 consensus_3277#1 CAAGCCCAAGTTTGGGCTTCCGGTGATCGTGAGGCTGCTGGATGCATGAAGTGGGGGTGT 289 ************************************** ********************* consensus_3277#0 GTTTCGATCACGCGTATAGCAATAATAAAAACCAGTCAATAGTAATACCCTACGCTTTGC 359 consensus_3277#1 GTTTCGATCACGTGTATAGCAATAATAAAAACCAGTCAATAGTAATACCCTACGCTTTGC 349 ************ *********************************************** consensus_3277#0 TGCGGAATATATGTTTATGTTTAAATAGCGTGGAAATGATGTGAAGATGATGAGTTGATA 419 consensus_3277#1 TGCGGAATATGCGTATATGTTTAAATAGCGTGGAAACGATGTGAAGATGATGACTTGATA 409 ********** ** ********************* **************** ****** consensus_3277#0 TTGCTTGCATGTTAAGTTCTAAAAATACAACAAAATTGTAAATGTTGTGCCGTGTTTGCG 479 consensus_3277#1 TTGCTTGCATGTTAAGTTCTAAAAATACAACAAA-TTGTAAATGTTGTGCCGTGTTTGCA 468 ********************************** ************************ consensus_3277#0 TGAGATTGAAATCGGTAAATGATGTGTCATGGTTGTATGAGATTTAAGATACTCTAAATA 539 consensus_3277#1 TGAGATTGAAATCGGTAAATGATGTGTCATGGTTGTATGAGATTTAAGATACTCTAAAAA 528 ********************************************************** * consensus_3277#0 ATAATTGCTAGTGGATGAT 558 consensus_3277#1 AAA---------------- 531 * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||