cluster # 3283

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Oryza sativa
cluster # 3283 cluster # 3283 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3283#0 length = 615 sequences # 1

consensus_3283#1 length = 535 sequences # 1

consensusID : consensus_3283#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 615
fasta sequence

                              [CAAGGGGAGAATAAATGATCCTGTCAATTAGCGTGAAGATGAACAGTAGCATCAGCGATGCTGCAGTTAATAACAACTGTTCCTTACCCTGCAGGGATCCATGATGTAACTATATAAGATCTTGCTGCTTGCATTGTAGCATACTCAAGATGACTCTGCATGCATACAGGGTGAACATGTTAGTCTTGGATTATCTGNTTAAGTTACTAGCAATGACAACAAGATCTTACTGAATGNGGAAACATGCTTTTGTNCCNNNATCGATTGGTTACCCTGACGGCTAGCTCAGTGCAACATCCCAAGTATGCCCTACAAATTCCCCTGAATAAAAAAAAATGTCATATACAGGTGAGAAACGATGTGCGGCATCAATGGGAACAAATTAATTAATTACCAGAAGGAATTTCATACACAGTACACAGACCATACCGTCAAATAGCATCACAACAAGCAGCCTGCAATTGGAATATTGGATAAGNTAAAGCATTTCAAATCTTTGGCCGGATGACTGCAATCAGATACGTTATCCTTTATTTCTCCTCCGNAACTCCATCTTTTATTTNCTTTTTGNTTTATAATATTNTGCNTGGCACATTTTTTCTATCCATCAATATA]

[+] EMBL CA766542             [CAAGGGGAGAATAAATGATCCTGTCAATTAGCGTGAAGATGAACAGTAGCATCAGCGATGCTGCAGTTAATAACAACTGTTCCTTACCCTGCAGGGATCCATGATGTAACTATATAAGATCTTGCTGCTTGCATTGTAGCATACTCAAGATGACTCTGCATGCATACAGGGTGAACATGTTAGTCTTGGATTATCTGNTTAAGTTACTAGCAATGACAACAAGATCTTACTGAATGNGGAAACATGCTTTTGTNCCNNNATCGATTGGTTACCCTGACGGCTAGCTCAGTGCAACATCCCAAGTATGCCCTACAAATTCCCCTGAATAAAAAAAAATGTCATATACAGGTGAGAAACGATGTGCGGCATCAATGGGAACAAATTAATTAATTACCAGAAGGAATTTCATACACAGTACACAGACCATACCGTCAAATAGCATCACAACAAGCAGCCTGCAATTGGAATATTGGATAAGNTAAAGCATTTCAAATCTTTGGCCGGATGACTGCAATCAGATACGTTATCCTTTATTTCTCCTCCGNAACTCCATCTTTTATTTNCTTTTTGNTTTATAATATTNTGCNTGGCACATTTTTTCTATCCATCAATATA]




>consensus_3283#0
CAAGGGGAGAATAAATGATCCTGTCAATTAGCGTGAAGATGAACAGTAGCATCAGCGATG
CTGCAGTTAATAACAACTGTTCCTTACCCTGCAGGGATCCATGATGTAACTATATAAGAT
CTTGCTGCTTGCATTGTAGCATACTCAAGATGACTCTGCATGCATACAGGGTGAACATGT
TAGTCTTGGATTATCTGNTTAAGTTACTAGCAATGACAACAAGATCTTACTGAATGNGGA
AACATGCTTTTGTNCCNNNATCGATTGGTTACCCTGACGGCTAGCTCAGTGCAACATCCC
AAGTATGCCCTACAAATTCCCCTGAATAAAAAAAAATGTCATATACAGGTGAGAAACGAT
GTGCGGCATCAATGGGAACAAATTAATTAATTACCAGAAGGAATTTCATACACAGTACAC
AGACCATACCGTCAAATAGCATCACAACAAGCAGCCTGCAATTGGAATATTGGATAAGNT
AAAGCATTTCAAATCTTTGGCCGGATGACTGCAATCAGATACGTTATCCTTTATTTCTCC
TCCGNAACTCCATCTTTTATTTNCTTTTTGNTTTATAATATTNTGCNTGGCACATTTTTT
CTATCCATCAATATA

consensusID : consensus_3283#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 535
fasta sequence

                              [AGGAAATTATGCCATTTCTTTCTTGCTTCATGAAAGTAACATAACCTCCGCCCAAAAAACAAAAGGCCAAAAAAAAAAAAGAAGAGGAAATGCCTCCCCATGCATTACATTTAAATTCAGGGAGGAGCAAAGGGCCAACTGCATCTTCTATTGCATGGCCTTGTTATGGATGCAACCATACAGGAATTGACTCCAACTACCCCCCCTATACAAAAAATGTCCAAAGTTATTCAGTTTATGAAATTGCAATTTTTTTTTTGCTTTGCCCCCCAAAAAAAAGTTATTTGTTCAGTTCTTCTGGCGCTCCCCCCCGCACCAGTATTTGCCAACGGCCCTACACTCTTGAACTCTAGCCAAACCCCGGGGGGGGAGGAAAATAAATGATCCCTGCAGGGATCCCTGATGTAACTATATAAAATCTTGCTGCTTGCATTGGAACATACTCAAAAAGACTTGAATGGGGAAACATGCTTTTGTTCCGAAATCGATTGGTTACCCTGACGGCTAGCTCAGGGCAACATCCCAAGTATGCCCT]

[+] EMBL CB620067             [AGGAAATTATGCCATTTCTTTCTTGCTTCATGAAAGTAACATAACCTCCGCCCAAAAAACAAAAGGCCAAAAAAAAAAAAGAAGAGGAAATGCCTCCCCATGCATTACATTTAAATTCAGGGAGGAGCAAAGGGCCAACTGCATCTTCTATTGCATGGCCTTGTTATGGATGCAACCATACAGGAATTGACTCCAACTACCCCCCCTATACAAAAAATGTCCAAAGTTATTCAGTTTATGAAATTGCAATTTTTTTTTTGCTTTGCCCCCCAAAAAAAAGTTATTTGTTCAGTTCTTCTGGCGCTCCCCCCCGCACCAGTATTTGCCAACGGCCCTACACTCTTGAACTCTAGCCAAACCCCGGGGGGGGAGGAAAATAAATGATCCCTGCAGGGATCCCTGATGTAACTATATAAAATCTTGCTGCTTGCATTGGAACATACTCAAAAAGACTTGAATGGGGAAACATGCTTTTGTTCCGAAATCGATTGGTTACCCTGACGGCTAGCTCAGGGCAACATCCCAAGTATGCCCT]




>consensus_3283#1
AGGAAATTATGCCATTTCTTTCTTGCTTCATGAAAGTAACATAACCTCCGCCCAAAAAAC
AAAAGGCCAAAAAAAAAAAAGAAGAGGAAATGCCTCCCCATGCATTACATTTAAATTCAG
GGAGGAGCAAAGGGCCAACTGCATCTTCTATTGCATGGCCTTGTTATGGATGCAACCATA
CAGGAATTGACTCCAACTACCCCCCCTATACAAAAAATGTCCAAAGTTATTCAGTTTATG
AAATTGCAATTTTTTTTTTGCTTTGCCCCCCAAAAAAAAGTTATTTGTTCAGTTCTTCTG
GCGCTCCCCCCCGCACCAGTATTTGCCAACGGCCCTACACTCTTGAACTCTAGCCAAACC
CCGGGGGGGGAGGAAAATAAATGATCCCTGCAGGGATCCCTGATGTAACTATATAAAATC
TTGCTGCTTGCATTGGAACATACTCAAAAAGACTTGAATGGGGAAACATGCTTTTGTTCC
GAAATCGATTGGTTACCCTGACGGCTAGCTCAGGGCAACATCCCAAGTATGCCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3283#0      CAAGGGGAGAATAAATGATCCTGTCAATTAGCGTGAAGATGAACAGTAGCATCAGCGATG 60
consensus_3283#1      --------------------------------AGGAAATTATGCCATTTCTTTCTTGCTT 28
                                                        ***  *   *  *  * *    * * 

consensus_3283#0      C-TGCAGTTAATAACAACTGTTCCTTACCCTGCAGGGATCCATGATGTAACTATATAAGA 119
consensus_3283#1      CATGAAAGTAACA-TAACCTCCGCCCAAAAAACAAAAGGCCAAAAAAAAAAAAGAAGAGG 87
                      * ** *  *** *  ***     *  *     **     ***  *   **  * *  ** 

consensus_3283#0      TCTTGCTGCTTGCATTGTAGCATACTCAAGATGACTCTGCATGCATACAGGGTGAACATG 179
consensus_3283#1      AAATGC--CTCCCCATGCATTACATTTAAATTCAG---GGAGGAGCAAAGGGCCAAC--- 139
                         ***  **  *  ** *  * * * **  * *    * * *   * ****  ***   

consensus_3283#0      TTAGTCTTGGATTATCTGNTTAAGTTACTAGCAATGACAACAAGATCTTACTGAATGNGG 239
consensus_3283#1      TGCATCTTCTATTGCATGGCC---TTGTTATGGATG-CAAC-----CATACAGGA-ATTG 189
                      *   ****  ***   **      **  **   *** ****     * *** * *    *

consensus_3283#0      AAACATGCTTTTGTNCCNNNATCGATTGGTTACCCTGACGGCTAGCTCAGTGCAACATCC 299
consensus_3283#1      ACTCCAACTACCCCCCCTATACAAAAAATGTCCAAAGTTATTCAGTTTA---TGAAATTG 246
                      *  *   **      **   *   *     * *   *      ** * *     * **  

consensus_3283#0      CAAGTATGCCCTACAAATTCCCCTGAATAAAAAAAAATGTCATATACAGGTGAGAAACGA 359
consensus_3283#1      CAATTTTTTTTTTGCTTTGCCCCCCAAAAAAAAGTTATTTGTTCAGTTCTTCTGGCGCTC 306
                      *** * *    *     * ****  ** *****   ** *  *       *  *   *  

consensus_3283#0      TGTGCGGCATCAATGGGAACAAATTAATTAATTACCAGAAGGAATTTCATACACAGTACA 419
consensus_3283#1      CCCCCCGCACCAGTATTTGCCAACGGCCC---TACACTCTTGAACTCTAGCCA-AACCCC 362
                          * *** ** *     * **         ***      *** *  *  ** *   * 

consensus_3283#0      CAGACCATACCGTCAAATAGCATCACAACAAGCAGCCTGCAATTGGAATATTGGATAAGN 479
consensus_3283#1      GGGGGGGGAGGAAAATAAATGATCCCTGCAGGGATCCC-TGATGTAACTAT---ATAAAA 418
                        *     *     * * *  *** *  ** * * **    **   * ***   ****  

consensus_3283#0      TAAAGCATTTCAAATCTTTGGCCGGATGACTGCAATCAGATACGTTATCCTTTATTTCTC 539
consensus_3283#1      TCTTGCTGCTTGCATTGGAACATACTCAAAAAGACTTGAATGGGGAAACAT--GCTTTTG 476
                      *   **   *   **             *    * *   **  *  * * *    ** * 

consensus_3283#0      CTCCGNAACTCCATCTTTTATTTNCTTTTTGNTTTATAATATTNTGCNTGGCACATTTTT 599
consensus_3283#1      TTCCGAAATCGATTGGTTACCCTGACGGCTAGCTCAGGGCAACATCCCAAGTATGCCCT- 535
                       **** **     *  **    *      *   * *    *   * *   * *     * 

consensus_3283#0      TCTATCCATCAATATA 615
consensus_3283#1      ----------------