cluster # 3303

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Oryza sativa
cluster # 3303 cluster # 3303 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3303#0 length = 429 sequences # 1

consensus_3303#1 length = 357 sequences # 1

consensusID : consensus_3303#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 429
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCGGGAAAAAAGGGACAACTCCAACTTTTTTGTTAAAACGGGCGGGCTTAGGATACAGCGACCCAAAAACGTTCTAAACCTCACATTTTATGGATTTGTTTCACACAGCAGGGTTTTAATGAAGCCCACAAACCCCATTTGGGATTTCAACCCCCCCTTTTTACCATAACAGTTTTTACAAATTTAACAAATTTGATTCCCCTTTGACGTAACAATGGCTCATAACACCTTGAAAATCATTTTTGAAGGGAAATCCCTCACCCGGGGGCCTTAACCTAAACCAGGCGGGGGGAAAGGTCGTTTTAATAAACAGCCTTTTCTTTTTCTTTGGCAATTGGTTTGGGGTGAGCGGGGGCCTGGGGCACCCC]

[+] EMBL CF313046             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCGGGAAAAAAGGGACAACTCCAACTTTTTTGTTAAAACGGGCGGGCTTAGGATACAGCGACCCAAAAACGTTCTAAACCTCACATTTTATGGATTTGTTTCACACAGCAGGGTTTTAATGAAGCCCACAAACCCCATTTGGGATTTCAACCCCCCCTTTTTACCATAACAGTTTTTACAAATTTAACAAATTTGATTCCCCTTTGACGTAACAATGGCTCATAACACCTTGAAAATCATTTTTGAAGGGAAATCCCTCACCCGGGGGCCTTAACCTAAACCAGGCGGGGGGAAAGGTCGTTTTAATAAACAGCCTTTTCTTTTTCTTTGGCAATTGGTTTGGGGTGAGCGGGGGCCTGGGGCACCCC]




>consensus_3303#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTT
CCCGGGAAAAAAGGGACAACTCCAACTTTTTTGTTAAAACGGGCGGGCTTAGGATACAGC
GACCCAAAAACGTTCTAAACCTCACATTTTATGGATTTGTTTCACACAGCAGGGTTTTAA
TGAAGCCCACAAACCCCATTTGGGATTTCAACCCCCCCTTTTTACCATAACAGTTTTTAC
AAATTTAACAAATTTGATTCCCCTTTGACGTAACAATGGCTCATAACACCTTGAAAATCA
TTTTTGAAGGGAAATCCCTCACCCGGGGGCCTTAACCTAAACCAGGCGGGGGGAAAGGTC
GTTTTAATAAACAGCCTTTTCTTTTTCTTTGGCAATTGGTTTGGGGTGAGCGGGGGCCTG
GGGCACCCC

consensusID : consensus_3303#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 357
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCAACCCCACATTTTATGGATTTGTTTCACACACCAGGGTTTTAATAAACCCCACAAACCCCTTTGGGGATTTAAACCCCCCCTTTTTACCATAACAGTTTTTACAAATTTAACAAATTTAATTACCCTTTAACGGAACAAGGGCTAATAACACTTTAAAAATCATTTTTAAAGGAAAATCCCTCACCCGGGGGCCTTAAACTAACCCAGGCGGGGGAAAAGGGCGTTTTAATAAAAAGCCTTTTCTTTTTCTTTGGAAACTGGTTTGGGGTAAACGGGGGCCTGCGGCACCCC]

[+] EMBL CF294839             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCAACCCCACATTTTATGGATTTGTTTCACACACCAGGGTTTTAATAAACCCCACAAACCCCTTTGGGGATTTAAACCCCCCCTTTTTACCATAACAGTTTTTACAAATTTAACAAATTTAATTACCCTTTAACGGAACAAGGGCTAATAACACTTTAAAAATCATTTTTAAAGGAAAATCCCTCACCCGGGGGCCTTAAACTAACCCAGGCGGGGGAAAAGGGCGTTTTAATAAAAAGCCTTTTCTTTTTCTTTGGAAACTGGTTTGGGGTAAACGGGGGCCTGCGGCACCCC]




>consensus_3303#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TCCCCAACCCCACATTTTATGGATTTGTTTCACACACCAGGGTTTTAATAAACCCCACAA
ACCCCTTTGGGGATTTAAACCCCCCCTTTTTACCATAACAGTTTTTACAAATTTAACAAA
TTTAATTACCCTTTAACGGAACAAGGGCTAATAACACTTTAAAAATCATTTTTAAAGGAA
AATCCCTCACCCGGGGGCCTTAAACTAACCCAGGCGGGGGAAAAGGGCGTTTTAATAAAA
AGCCTTTTCTTTTTCTTTGGAAACTGGTTTGGGGTAAACGGGGGCCTGCGGCACCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3303#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_3303#1      -TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTT 59
                       ***********************************************************

consensus_3303#0      CCCGGGAAAAAAGGGACAACTCCAACTTTTTTGTTAAAACGGGCGGGCTTAGGATACAGC 120
consensus_3303#1      TTC--------------------------------------------------------- 62
                        *                                                         

consensus_3303#0      GACCCAAAAACGTTCTAAACCTCACATTTTATGGATTTGTTTCACACAGCAGGGTTTTAA 180
consensus_3303#1      --------------CCCAACCCCACATTTTATGGATTTGTTTCACACACCAGGGTTTTAA 108
                                    *  **** ************************** ***********

consensus_3303#0      TGAAGCCCACAAACCCCATTTGGGATTTCAACCCCCCCTTTTTACCATAACAGTTTTTAC 240
consensus_3303#1      TAAACCCCACAAACCCCTTTGGGGATTTAAACCCCCCCTTTTTACCATAACAGTTTTTAC 168
                      * ** ************ ** ******* *******************************

consensus_3303#0      AAATTTAACAAATTTGATTCCCCTTTGACGTAACAATGGCTCATAACACCTTGAAAATCA 300
consensus_3303#1      AAATTTAACAAATTTAATTACCCTTTAACGGAACAAGGGCTAATAACACTTTAAAAATCA 228
                      *************** *** ****** *** ***** **** ******* ** *******

consensus_3303#0      TTTTTGAAGGGAAATCCCTCACCCGGGGGCCTTAACCTAAACCAGGCGGGGGGAAAGGTC 360
consensus_3303#1      TTTTTAAAGGAAAATCCCTCACCCGGGGGCCTTAAACTAACCCAGGCGGGGGAAAAGGGC 288
                      ***** **** ************************ **** *********** ***** *

consensus_3303#0      GTTTTAATAAACAGCCTTTTCTTTTTCTTTGGCAATTGGTTTGGGGTGAGCGGGGGCCTG 420
consensus_3303#1      GTTTTAATAAAAAGCCTTTTCTTTTTCTTTGGAAACTGGTTTGGGGTAAACGGGGGCCTG 348
                      *********** ******************** ** *********** * **********

consensus_3303#0      GGGCACCCC 429
consensus_3303#1      CGGCACCCC 357
                       ********