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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3304#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 793 fasta sequence
[CTCCGCCGCCGCCGATGTTGTCCGCCGCGCGATCCGGAGCCCTGGCGCGATGGCGTCCCCGGGAGACCCTCCTCCCTCGCCTCCTCTCCTCCTCCGCCACCGGCGCGGCCTCCCCGCCTGCGCGGCAGGCGGCGCTGCTGGAGCTCCCGGAGGTGGAGAAGGTGCTGCGCGACGTGCGGGCGGGGGACGTGCGCGTCTTCCCCGTCGGCGAGGGCGGGCTGCATGGCGGCTCCTGCGCCGACTACATGGTCGTCGCCACCGGCCGCTCCGACTGGCACGTCCGCAACATCGCCCAGGCTCTACTCTACAAGATAAAACAGAAGCAGAAGGGTTCTGATAGAATATTGATGCCAAGTGTTGAAGGCCAGCAAGCTGGAAAGTGGATTGTCATTGATTCTGGAAGTATCATCATTCATGCACTTGAAGAAAGAGCAAGAGAATATTATGATTTGGAAAGCATTTGGACAAAAGAAGTGTCTCCAAACATTTCTGTTCAGGAATTGGAAACTTCCCTTGTGAAGACACGCCGCAGGGACCACTCTCAGAAACCCATGAAGAGCATTTGAGTACATGAGCTAGTTCCATGATCTATGATCTGTGATTGTGAGTGTGTAATCCATCAGATTTGTGTCATCTATTTCTGATGTAGATATTGTGTGGAACGAACCGCACCACTGGCCACCATTAACTTAAGCTTCATTTACATTTCATCTATGGTTTATTCCAGGTCAACAAAGATGATAAAGTGGTGTCAAGCATGTATTTGCATCCAATGAATTTTGAGGATGGGTGA]
[+] EMBL AK068925 [CTCCGCCGCCGCCGATGTTGTCCGCCGCGCGATCCGGAGCCCTGGCGCGATGGCGTCCCCGGGAGACCCTCCTCCCTCGCCTCCTCTCCTCCTCCGCCACCGGCGCGGCCTCCCCGCCTGCGCGGCAGGCGGCGCTGCTGGAGCTCCCGGAGGTGGAGAAGGTGCTGCGCGACGTGCGGGCGGGGGACGTGCGCGTCTTCCCCGTCGGCGAGGGCGGGCTGCATGGCGGCTCCTGCGCCGACTACATGGTCGTCGCCACCGGCCGCTCCGACTGGCACGTCCGCAACATCGCCCAGGCTCTACTCTACAAGATAAAACAGAAGCAGAAGGGTTCTGATAGAATATTGATGCCAAGTGTTGAAGGCCAGCAAGCTGGAAAGTGGATTGTCATTGATTCTGGAAGTATCATCATTCATGCACTTGAAGAAAGAGCAAGAGAATATTATGATTTGGAAAGCATTTGGACAAAAGAAGTGTCTCCAAACATTTCTGTTCAGGAATTGGAAACTTCCCTTGTGAAGACACGCCGCAGGGACCACTCTCAGAAACCCATGAAGAGCATTTGAGTACATGAGCTAGTTCCATGATCTATGATCTGTGATTGTGAGTGTGTAATCCATCAGATTTGTGTCATCTATTTCTGATGTAGATATTGTGTGGAACGAACCGCACCACTGGCCACCATTAACTTAAGCTTCATTTACATTTCATCTATGGTTTATTCCAGGTCAACAAAGATGATAAAGTGGTGTCAAGCATGTATTTGCATCCAATGAATTTTGAGGATGGGTGA]
consensusID : consensus_3304#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence
[AGGGGGATCACACGGAATTGGAAACTTCCCTTGTGAAGACACGTCGCAGGGACCACTCTCAGAAACCCATGAAGAGCATTTGAGTACATGAGCTAGTTCCATGATCTATGATCTGTGATTGTCAACAAAGATGATAAAGTGGTGTCAAGCATGTATTTGCATCCAATGAATTTTGAGGATGGGTGAGATGCTTGTGAATGAGATTACCAAGATGCTGGACACCTTGTTTCTGTGGGCCTCTCTGCTTGCCTATGTACTGTGGTTTCTCTTTCTTTCGTTGACAGTATGGTCTGTACTTTTGATGACTCCTTTCAAGCTCAAGCAAAGACAATGTATGTTATTCTTTTTCTTTTTTATCGCCCCCACGCTGGTGGTTTTTAGAGGGTCATGTTCGCTCTCTCGATATGGCGCCCTTCCCCCCTAAGAGTTGTACCTGTAAGGCTGTAACTGTAAGTTGTGCAGAGAACTCTAACCTGGGGAGTGTTAACGATCAGATATTGTATGAGCAAAATGCATAGATAACACTAGAAATCT]
[+] EMBL CA766655 [AGGGGGATCACACGGAATTGGAAACTTCCCTTGTGAAGACACGTCGCAGGGACCACTCTCAGAAACCCATGAAGAGCATTTGAGTACATGAGCTAGTTCCATGATCTATGATCTGTGATTGTCAACAAAGATGATAAAGTGGTGTCAAGCATGTATTTGCATCCAATGAATTTTGAGGATGGGTGAGATGCTTGTGAATGAGATTACCAAGATGCTGGACACCTTGTTTCTGTGGGCCTCTCTGCTTGCCTATGTACTGTGGTTTCTCTTTCTTTCGTTGACAGTATGGTCTGTACTTTTGATGACTCCTTTCAAGCTCAAGCAAAGACAATGTATGTTATTCTTTTTCTTTTTTATCGCCCCCACGCTGGTGGTTTTTAGAGGGTCATGTTCGCTCTCTCGATATGGCGCCCTTCCCCCCTAAGAGTTGTACCTGTAAGGCTGTAACTGTAAGTTGTGCAGAGAACTCTAACCTGGGGAGTGTTAACGATCAGATATTGTATGAGCAAAATGCATAGATAACACTAGAAATCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3304#0 CTCCGCCGCCGCCGATGTTGTCCGCCGCGCGATCCGGAGCCCTGGCGCGATGGCGTCCCC 60
consensus_3304#1 ------------------------------------------------------------
consensus_3304#0 GGGAGACCCTCCTCCCTCGCCTCCTCTCCTCCTCCGCCACCGGCGCGGCCTCCCCGCCTG 120
consensus_3304#1 ------------------------------------------------------------
consensus_3304#0 CGCGGCAGGCGGCGCTGCTGGAGCTCCCGGAGGTGGAGAAGGTGCTGCGCGACGTGCGGG 180
consensus_3304#1 ---------------AGGGGGATCACACGGAATTGGA-AACTTCCCTTGTGAAGACACGT 44
* *** * * **** **** ** * * * ** * *
consensus_3304#0 CGGGGGACGTGCGCGTCTTCCCCGTCGGCGAGGGCGGGCTGCATGGCGGCTCCTGCGCCG 240
consensus_3304#1 CGCAGGGACCAC---TCTCAGAAACCCATGAAGA------GCATTTGAGTACATGAGCTA 95
** ** * *** * ** * **** * * ** **
consensus_3304#0 ACTACATGGTC-GTCGCCACCGGCCGCTCCGACTGGCACGTCCGCAACATCGCCCAGGCT 299
consensus_3304#1 GTTCCATGATCTATGATCTGTGATTGTCAACAAAGATGATAAAGTGGTGTCAAGCATGTA 155
* **** ** * * * * * * * ** ** *
consensus_3304#0 CTACTCTACAAGATAAAACAGAAGCAGAAGGGTTCTGATAGAATATTGATGCCAAG-TGT 358
consensus_3304#1 TTTGCATCCAATGAATTTTGAGGATGGGTGAGATGCTTGTGAATGAGATTACCAAGATGC 215
* * *** * * * * * **** * ***** **
consensus_3304#0 TGAAGGCCAGCAAGCTGGAAAGTGGATTG-TCATTGATTCTGGAAGTATCATCATTCATG 417
consensus_3304#1 TGGACACCTTGTTTCTGTGGGCCTCTCTGCTTGCCTATGTACTGTGGTTTCTCTTTCTTT 275
** * ** *** ** * ** * * ** *** *
consensus_3304#0 CACTTGAAGAAAGAGCAAGAGAATATTATGATTTGGAAAGCATTTGGACAAAAGAAGTGT 477
consensus_3304#1 CG-TTGACAGTATGGTCTGTACTTTTGATGACTCCTTTCAAGCTCAAGCAAAGACAATGT 334
* **** * * * * * **** * * **** * ***
consensus_3304#0 CTCCAAACATTTCTGTTCAGGAATTGGAAACTTCCCTTGTGAAGACACGCCGCAGGGACC 537
consensus_3304#1 ATGTTATTCTTTTTCTTT-----TTTATCGCCCCCACGCTGGTGGTTTTTAG--AGGGTC 387
* * *** * ** ** * ** ** * * ** *
consensus_3304#0 ACTCTCAGAAACCCATGAAGAGCATTTGAGTACATGAGCTAGTTCCATGATCTATGATCT 597
consensus_3304#1 ATGTTCGCTCTCTCGATATGGCGCCCTTCCCCCCTAAG--AGTTGTACC-TGTAAGG-CT 443
* ** * * * * * * * ** **** * * ** * **
consensus_3304#0 GTGATTGTGAGT-GTGTAATCCA-TCAGATTTGTGTCATCTATTTCTGATGTAGATATTG 655
consensus_3304#1 GTAACTGTAAGTTGTGCAGAGAACTCTAACCTGGGGAGT--GTTAACGAT-CAGATATTG 500
** * *** *** *** * * ** * ** * * ** *** ********
consensus_3304#0 TGTGGAACGAACCGCACCACTGGCCACCATTAACTTAAGCTTCATTTACATTTCATCTAT 715
consensus_3304#1 TATG-AGCAAAATGCATAGATAAC-ACTAGAAATCT------------------------ 534
* ** * * ** *** * * ** * ** *
consensus_3304#0 GGTTTATTCCAGGTCAACAAAGATGATAAAGTGGTGTCAAGCATGTATTTGCATCCAATG 775
consensus_3304#1 ------------------------------------------------------------
consensus_3304#0 AATTTTGAGGATGGGTGA 793
consensus_3304#1 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||