|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3316#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 733 fasta sequence
[CTCTCCCTTAATCATGGGTGGTGTGCGGCGGCAAGGATAGCTGAGGTGGCAAAGCTCGTGGCGCGTGGCGGCGGCGCGACGGGGGCTTGCGGCAGTGGCGCGCGGGCGGCTCACGGCCGGATCCGCCGCTGACGCCGACGGTGGAGGTCGGATCCGCCGCCGCGATGACGTTGGAGGCCGGATCCGCCGCCGCGACGAAGGGGGAGGCCGACGAGGAGGGTTGGTGCGGATCCGCCAGCGTCAGTGCTCGGGCTGTCCTTCACGGCGGTGAAGGAGGTGGATCCAGCGGTGGACGACGACGACGGCTCCCGCGACGACGAAGACGGCTACCGTGACGATGACAACGATGGCTACGGCTTCCTTGCGACCCTTCTTGCTCGCCGGCTCGCCGCTGTACCGCCACAAGGTGCCTCAAGGGAAGCCCGCTTGTGATGATGGTGATGGTCGTCGCCACCGCCGTGTGGAAGTTCATGGCGTTCCTGAACAAGGCGGTGGCCACGGCGAGGTGTCGTGGGTGGCGGCCAAGGAGGTGGTGCAGCTGTAGCGATTGGAGGAGGACGCCGGAGTTTACGCTACGTCGAGTCCTCCATGGATTTGGGATTTTGGGATTAGGGATTGGGGATTTTGGGGTTTTTTTTTTGCAGGAATGTGAATTGTGGATTTGGGATGTGAATTGGGGAATGTGAATTGTGGAGTAGATTTTGAAACGAGAACATGAAGTTTGAAATTTGAT]
[+] EMBL AK073516 [CTCTCCCTTAATCATGGGTGGTGTGCGGCGGCAAGGATAGCTGAGGTGGCAAAGCTCGTGGCGCGTGGCGGCGGCGCGACGGGGGCTTGCGGCAGTGGCGCGCGGGCGGCTCACGGCCGGATCCGCCGCTGACGCCGACGGTGGAGGTCGGATCCGCCGCCGCGATGACGTTGGAGGCCGGATCCGCCGCCGCGACGAAGGGGGAGGCCGACGAGGAGGGTTGGTGCGGATCCGCCAGCGTCAGTGCTCGGGCTGTCCTTCACGGCGGTGAAGGAGGTGGATCCAGCGGTGGACGACGACGACGGCTCCCGCGACGACGAAGACGGCTACCGTGACGATGACAACGATGGCTACGGCTTCCTTGCGACCCTTCTTGCTCGCCGGCTCGCCGCTGTACCGCCACAAGGTGCCTCAAGGGAAGCCCGCTTGTGATGATGGTGATGGTCGTCGCCACCGCCGTGTGGAAGTTCATGGCGTTCCTGAACAAGGCGGTGGCCACGGCGAGGTGTCGTGGGTGGCGGCCAAGGAGGTGGTGCAGCTGTAGCGATTGGAGGAGGACGCCGGAGTTTACGCTACGTCGAGTCCTCCATGGATTTGGGATTTTGGGATTAGGGATTGGGGATTTTGGGGTTTTTTTTTTGCAGGAATGTGAATTGTGGATTTGGGATGTGAATTGGGGAATGTGAATTGTGGAGTAGATTTTGAAACGAGAACATGAAGTTTGAAATTTGAT]
consensusID : consensus_3316#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence
[CGAGACAAGGGGGAGGCTAACGGGGAGGGTGGGTGCGGATCCGCCGGCATCGGTGCTTGGGCGGTCCTTCACGGCGGTGAAGGAGGTGGATCCAGTGGTGGACAGCGACGACGGCTCCCGCGATAACGACAACGGCTACCGTGACAATGACAACGACGGCTACGGCTTCTTGGCGACCCTTCTTGCTCGCCGGCACGCCGCTGTACCGCCACAAGGTGCCTCAAGGGAAGCCCGCTCGTGACAATGGTGAAGGTCGTCGCCGCCGCTGTGTGGAAGTTCATGGCGTTCCTAAACAAGGCAGCGGCGGTGTCGCGGGTGGTGGCCGAGGAGGTGGTGCAGTTGCAGCGATTGGAGGAGGATGCCGGAGTTGACGCTGCGTCGAGTCCTCCATGGATTTGGGATTTTGGGATGGGTGATTGGGTTTTTTGGGTTTTTTTTTTTCCAGAAATGTGAATTGTGGATTTGGGATGTGAATTGGCGAATGT]
[+] EMBL CA766712 [CGAGACAAGGGGGAGGCTAACGGGGAGGGTGGGTGCGGATCCGCCGGCATCGGTGCTTGGGCGGTCCTTCACGGCGGTGAAGGAGGTGGATCCAGTGGTGGACAGCGACGACGGCTCCCGCGATAACGACAACGGCTACCGTGACAATGACAACGACGGCTACGGCTTCTTGGCGACCCTTCTTGCTCGCCGGCACGCCGCTGTACCGCCACAAGGTGCCTCAAGGGAAGCCCGCTCGTGACAATGGTGAAGGTCGTCGCCGCCGCTGTGTGGAAGTTCATGGCGTTCCTAAACAAGGCAGCGGCGGTGTCGCGGGTGGTGGCCGAGGAGGTGGTGCAGTTGCAGCGATTGGAGGAGGATGCCGGAGTTGACGCTGCGTCGAGTCCTCCATGGATTTGGGATTTTGGGATGGGTGATTGGGTTTTTTGGGTTTTTTTTTTTCCAGAAATGTGAATTGTGGATTTGGGATGTGAATTGGCGAATGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3316#0 CTCTCCCTTAATCATGGGTGGTGTGCGGCGGCAAGGATAGCTGAGGTGGCAAAGCTCGTG 60
consensus_3316#1 ------------------------------------------------------------
consensus_3316#0 GCGCGTGGCGGCGGCGCGACGGGGGCTTGCGGCAGTGGCGCGCGGGCGGCTCACGGCCGG 120
consensus_3316#1 ------------------------------------------------------------
consensus_3316#0 ATCCGCCGCTGACGCCGACGGTGGAGGTCGGATCCGCCGCCGCGATGACGTTGGAGGCCG 180
consensus_3316#1 ------------------------------------------------------------
consensus_3316#0 GATCCGCCGCCGCGACGAAGGGGGAGGCCGACGAGGAGGGTTGGTGCGGATCCGCCAGCG 240
consensus_3316#1 ----------CGAGAC-AAGGGGGAGGCTAACGGGGAGGGTGGGTGCGGATCCGCCGGCA 49
** *** *********** *** ******* ************** **
consensus_3316#0 TCAGTGCTCGGGCTGTCCTTCACGGCGGTGAAGGAGGTGGATCCAGCGGTGGACGACGAC 300
consensus_3316#1 TCGGTGCTTGGGCGGTCCTTCACGGCGGTGAAGGAGGTGGATCCAGTGGTGGACAGCGAC 109
** ***** **** ******************************** ******* ****
consensus_3316#0 GACGGCTCCCGCGACGACGAAGACGGCTACCGTGACGATGACAACGATGGCTACGGCTTC 360
consensus_3316#1 GACGGCTCCCGCGATAACGACAACGGCTACCGTGACAATGACAACGACGGCTACGGCTTC 169
************** **** ************** ********** ************
consensus_3316#0 CTTGCGACCCTTCTTGCTCGCCGGCTCGCCGCTGTACCGCCACAAGGTGCCTCAAGGGAA 420
consensus_3316#1 TTGGCGACCCTTCTTGCTCGCCGGCACGCCGCTGTACCGCCACAAGGTGCCTCAAGGGAA 229
* ********************** **********************************
consensus_3316#0 GCCCGCTTGTGATGATGGTGATGGTCGTCGCCACCGCCGTGTGGAAGTTCATGGCGTTCC 480
consensus_3316#1 GCCCGCTCGTGACAATGGTGAAGGTCGTCGCCGCCGCTGTGTGGAAGTTCATGGCGTTCC 289
******* **** ******* ********** **** **********************
consensus_3316#0 TGAACAAGGCGGTGGCCACGGCGAGGTGTCGTGGGTGGCGGCCAAGGAGGTGGTGCAGCT 540
consensus_3316#1 TAAACAAGGCAGCGGC--------GGTGTCGCGGGTGGTGGCCGAGGAGGTGGTGCAGTT 341
* ******** * *** ******* ****** **** ************** *
consensus_3316#0 GTAGCGATTGGAGGAGGACGCCGGAGTTTACGCTACGTCGAGTCCTCCATGGATTTGGGA 600
consensus_3316#1 GCAGCGATTGGAGGAGGATGCCGGAGTTGACGCTGCGTCGAGTCCTCCATGGATTTGGGA 401
* **************** ********* ***** *************************
consensus_3316#0 TTTTGGGATTAGGGATTGGGGATTTTGGGGTTTTTTTTTTGCAGGAATGTGAATTGTGGA 660
consensus_3316#1 TTTTGGGATGGGTGATTGGGTTTTTTGGGTTTTTTTTTTTCCAGAAATGTGAATTGTGGA 461
********* * ******* ******* ********** *** ***************
consensus_3316#0 TTTGGGATGTGAATTGGGGAATGTGAATTGTGGAGTAGATTTTGAAACGAGAACATGAAG 720
consensus_3316#1 TTTGGGATGTGAATTGGCGAATGT------------------------------------ 485
***************** ******
consensus_3316#0 TTTGAAATTTGAT 733
consensus_3316#1 -------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||