cluster # 3326

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Oryza sativa
cluster # 3326 cluster # 3326 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3326#0 length = 278 sequences # 1

consensus_3326#1 length = 189 sequences # 1

consensusID : consensus_3326#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 278
fasta sequence

                              [AGGTGTCCCCCGTCTTCAGTCTCTTGAGTGACTGACGGACACTACTCTACTCCCTCCGCTCGCCGGAGCTAATGGCGACGCGGCGAGCTTCCACCACCCCGCCTCCNCGCAGCCGGCGATACCCGGCGCGGCGGCGGCGGCGGTGGCCGTTGCGCCGCATGGCCGTTTCTACGTGGGGTCTCTACGCCCACGGCCTCCTCCGCTCNGCCCGACCTCCTCACGTTTCTCACGCGTTCTCTGGCGCTTCTCTCTCGGCTCCTCTGCAACGCTCNTCTCGG]

[+] EMBL OSS13962A            [AGGTGTCCCCCGTCTTCAGTCTCTTGAGTGACTGACGGACACTACTCTACTCCCTCCGCTCGCCGGAGCTAATGGCGACGCGGCGAGCTTCCACCACCCCGCCTCCNCGCAGCCGGCGATACCCGGCGCGGCGGCGGCGGCGGTGGCCGTTGCGCCGCATGGCCGTTTCTACGTGGGGTCTCTACGCCCACGGCCTCCTCCGCTCNGCCCGACCTCCTCACGTTTCTCACGCGTTCTCTGGCGCTTCTCTCTCGGCTCCTCTGCAACGCTCNTCTCGG]




>consensus_3326#0
AGGTGTCCCCCGTCTTCAGTCTCTTGAGTGACTGACGGACACTACTCTACTCCCTCCGCT
CGCCGGAGCTAATGGCGACGCGGCGAGCTTCCACCACCCCGCCTCCNCGCAGCCGGCGAT
ACCCGGCGCGGCGGCGGCGGCGGTGGCCGTTGCGCCGCATGGCCGTTTCTACGTGGGGTC
TCTACGCCCACGGCCTCCTCCGCTCNGCCCGACCTCCTCACGTTTCTCACGCGTTCTCTG
GCGCTTCTCTCTCGGCTCCTCTGCAACGCTCNTCTCGG

consensusID : consensus_3326#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 189
fasta sequence

                              [AGGTGTCCCCCGTCTTCAGTCTCTTGAGTGACTGACGGACACTACTCTACTCCCTCCGCTCGCCGGAGCTAATNGCGACGCCGGCGAGCTTCCACCACNCCGCCTCCCCGCAGCCGGCGATACCCGGCGCGGCGGCGGCGGCGGTNGCCGCGTGCGCCGCCATNGCCGTCTCCTACGTCGCGGTGCTCT]

[+] EMBL AU089763             [AGGTGTCCCCCGTCTTCAGTCTCTTGAGTGACTGACGGACACTACTCTACTCCCTCCGCTCGCCGGAGCTAATNGCGACGCCGGCGAGCTTCCACCACNCCGCCTCCCCGCAGCCGGCGATACCCGGCGCGGCGGCGGCGGCGGTNGCCGCGTGCGCCGCCATNGCCGTCTCCTACGTCGCGGTGCTCT]




>consensus_3326#1
AGGTGTCCCCCGTCTTCAGTCTCTTGAGTGACTGACGGACACTACTCTACTCCCTCCGCT
CGCCGGAGCTAATNGCGACGCCGGCGAGCTTCCACCACNCCGCCTCCCCGCAGCCGGCGA
TACCCGGCGCGGCGGCGGCGGCGGTNGCCGCGTGCGCCGCCATNGCCGTCTCCTACGTCG
CGGTGCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3326#0      AGGTGTCCCCCGTCTTCAGTCTCTTGAGTGACTGACGGACACTACTCTACTCCCTCCGCT 60
consensus_3326#1      AGGTGTCCCCCGTCTTCAGTCTCTTGAGTGACTGACGGACACTACTCTACTCCCTCCGCT 60
                      ************************************************************

consensus_3326#0      CGCCGGAGCTAATGGCGACGC-GGCGAGCTTCCACCACCCCGCCTCCNCGCAGCCGGCGA 119
consensus_3326#1      CGCCGGAGCTAATNGCGACGCCGGCGAGCTTCCACCACNCCGCCTCCCCGCAGCCGGCGA 120
                      ************* ******* **************** ******** ************

consensus_3326#0      TACCCGGCGCGGCGGCGGCGGCGGTGGCCGT-TGCGCCGC-ATGGCCGTTTC-TACGTGG 176
consensus_3326#1      TACCCGGCGCGGCGGCGGCGGCGGTNGCCGCGTGCGCCGCCATNGCCGTCTCCTACGTCG 180
                      ************************* ****  ******** ** ***** ** ***** *

consensus_3326#0      GGTCTCTACGCCCACGGCCTCCTCCGCTCNGCCCGACCTCCTCACGTTTCTCACGCGTTC 236
consensus_3326#1      CGGTGCTCT--------------------------------------------------- 189
                       *   **                                                     

consensus_3326#0      TCTGGCGCTTCTCTCTCGGCTCCTCTGCAACGCTCNTCTCGG 278
consensus_3326#1      ------------------------------------------