cluster # 3330

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Oryza sativa
cluster # 3330 cluster # 3330 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3330#0 length = 399 sequences # 1

consensus_3330#1 length = 378 sequences # 1

consensusID : consensus_3330#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 399
fasta sequence

                              [AGGTGGCACATTCAGATGCAAGGAGGTTGCCACTGAAGCTTCTAGAAGTTGGCAACATCAAGGAGGAGCCTGATGAAACCATTGGAGAGAAGATGGAGATGGAGATGGAAGGGAGGAGGCTGATAGGNTCAAGGCCACCAAGGTGTGAGAGGGTGTGCATGTCCTGTGGCCACTGTGAGGCAGTNCAAGTGCCCATTGTGCCACAGGTGATTCAGAAGACACAAACCAAAGCTGCTGCTGCTGCTGCTGCCGAGCAAGAACAGCATGTGGTGGTGAGTNCTACTGCCATCAGTGCTGCAGTTTTCACCTACAGGGTGAATGGCCTCTCAAACTACAAGCCATTNAGCTGGGAAATGCAAGTTTGGTGGCATCATCCTTGATCCCTAATGTTCCCACTCA]

[+] EMBL AU065847             [AGGTGGCACATTCAGATGCAAGGAGGTTGCCACTGAAGCTTCTAGAAGTTGGCAACATCAAGGAGGAGCCTGATGAAACCATTGGAGAGAAGATGGAGATGGAGATGGAAGGGAGGAGGCTGATAGGNTCAAGGCCACCAAGGTGTGAGAGGGTGTGCATGTCCTGTGGCCACTGTGAGGCAGTNCAAGTGCCCATTGTGCCACAGGTGATTCAGAAGACACAAACCAAAGCTGCTGCTGCTGCTGCTGCCGAGCAAGAACAGCATGTGGTGGTGAGTNCTACTGCCATCAGTGCTGCAGTTTTCACCTACAGGGTGAATGGCCTCTCAAACTACAAGCCATTNAGCTGGGAAATGCAAGTTTGGTGGCATCATCCTTGATCCCTAATGTTCCCACTCA]




>consensus_3330#0
AGGTGGCACATTCAGATGCAAGGAGGTTGCCACTGAAGCTTCTAGAAGTTGGCAACATCA
AGGAGGAGCCTGATGAAACCATTGGAGAGAAGATGGAGATGGAGATGGAAGGGAGGAGGC
TGATAGGNTCAAGGCCACCAAGGTGTGAGAGGGTGTGCATGTCCTGTGGCCACTGTGAGG
CAGTNCAAGTGCCCATTGTGCCACAGGTGATTCAGAAGACACAAACCAAAGCTGCTGCTG
CTGCTGCTGCCGAGCAAGAACAGCATGTGGTGGTGAGTNCTACTGCCATCAGTGCTGCAG
TTTTCACCTACAGGGTGAATGGCCTCTCAAACTACAAGCCATTNAGCTGGGAAATGCAAG
TTTGGTGGCATCATCCTTGATCCCTAATGTTCCCACTCA

consensusID : consensus_3330#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 378
fasta sequence

                              [CTACTGCCCATCAAGTGCTGCCAGTGTTCACCTACAGGGTGAATGGCCTCTCAAACTACAAGCCATTGAGCTGGAAATGCAAGTGTGGTGGCATCATCCTTGATCCATAATGTTCCAACTCATGGCAGATCACTTCAACATTGTGCAAAAATGTAAACAACTTGCTCCTCTGCTTGTTCATCTGAATTTTTCTTTCTTTGTTGTTCTACTACTAGCTAGTAGCTACTTCCTCCTTTTGATTTCTATCTAGGCCAGAGATTGAAAATGTGGGGAGATGGAGATGAAAAGCTGCATGTTTGTTGTACATTTAGGCAGCAATTTTGTGAAAATGAATGAATGAATGAATGCCTGATTTAGGCATTGAATGCAAAAAAAAAA]

[+] EMBL AU101784             [CTACTGCCCATCAAGTGCTGCCAGTGTTCACCTACAGGGTGAATGGCCTCTCAAACTACAAGCCATTGAGCTGGAAATGCAAGTGTGGTGGCATCATCCTTGATCCATAATGTTCCAACTCATGGCAGATCACTTCAACATTGTGCAAAAATGTAAACAACTTGCTCCTCTGCTTGTTCATCTGAATTTTTCTTTCTTTGTTGTTCTACTACTAGCTAGTAGCTACTTCCTCCTTTTGATTTCTATCTAGGCCAGAGATTGAAAATGTGGGGAGATGGAGATGAAAAGCTGCATGTTTGTTGTACATTTAGGCAGCAATTTTGTGAAAATGAATGAATGAATGAATGCCTGATTTAGGCATTGAATGCAAAAAAAAAA]




>consensus_3330#1
CTACTGCCCATCAAGTGCTGCCAGTGTTCACCTACAGGGTGAATGGCCTCTCAAACTACA
AGCCATTGAGCTGGAAATGCAAGTGTGGTGGCATCATCCTTGATCCATAATGTTCCAACT
CATGGCAGATCACTTCAACATTGTGCAAAAATGTAAACAACTTGCTCCTCTGCTTGTTCA
TCTGAATTTTTCTTTCTTTGTTGTTCTACTACTAGCTAGTAGCTACTTCCTCCTTTTGAT
TTCTATCTAGGCCAGAGATTGAAAATGTGGGGAGATGGAGATGAAAAGCTGCATGTTTGT
TGTACATTTAGGCAGCAATTTTGTGAAAATGAATGAATGAATGAATGCCTGATTTAGGCA
TTGAATGCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3330#0      AGGTGGCACATTCAGATGCAAGGAGGTTGCCACTGAAGCTTCTAGAAGTTGGCAACATCA 60
consensus_3330#1      -----------------------CTACTGCCCATCAAG-TGCTGCCAGTGTTCACCTACA 36
                                                 ****  * *** * **   ***   ** *  **

consensus_3330#0      AGGAGGA-GCCTGATGAAACCATTGGAGAGAAGATGGAGATGGAGATGGAAGGGAGGAGG 119
consensus_3330#1      GGGTGAATGGCCTCTCAAACTAC-----AAGCCATTGAGCTGGAAATGCAAGTGTGGTGG 91
                       ** * * * *   * **** *      *    ** *** **** *** *** * ** **

consensus_3330#0      CTGATAGGNTCAAGGCCACCAAGGTGTGAGAGGGTGTGCATGTCCTGTGGCCACTGTGAG 179
consensus_3330#1      C--ATCATCCTTGATCCAT-AATGTTCCAACTCATG-GCAGATCACTTCAACATTGTGCA 147
                      *  **          ***  ** **   *     ** ***  **   *   ** ****  

consensus_3330#0      GCAGTNCAAGTGCCCATTGTGCCACAGGTGATTCAGAAGACACAAACCAAAGCTGCTGCT 239
consensus_3330#1      AAAATGTAAACAAC--TTGCTCCTCTGCTTGTTCATCTGAATTTTTCTTTCTTTGTTGTT 205
                        * *  **    *  ***  ** * * *  ****   **      *      ** ** *

consensus_3330#0      GCTGCTGCTGCCGAGCAAGAACAGCATGTGGTGGTGAGTNCTACTGCCATCAGTGCTGCA 299
consensus_3330#1      -CTACTACTAGCTAGTAGCTACTTCCTCC--TTTTGATTTCTATCTAGGCCAGAGATTGA 262
                       ** ** **  * ** *   **  * *    *  *** * ***       *** * *  *

consensus_3330#0      GTTTTCACCTACAGGGTGA--ATGGCCTCTCAAACTACAAGCCATTNAGCTGGGAAAT-- 355
consensus_3330#1      AAATGTGGGGAGATGGAGATGAAAAGCTGCATGTTTGTTGTACATTTAGGCAGCAATTTT 322
                         *      * * ** **  *    **       *      **** **   * ** *  

consensus_3330#0      GCAAGTTTGGTGGCATCATCCTTGATCCCTAATGTTCCCACTCA-------------- 399
consensus_3330#1      GTGAAAATGAATGAATGAA--TGAATGCCTGATTTAGGCATTGAATGCAAAAAAAAAA 378
                      *  *   **   * ** *   *  ** *** ** *   ** * *