These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3330#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence [AGGTGGCACATTCAGATGCAAGGAGGTTGCCACTGAAGCTTCTAGAAGTTGGCAACATCAAGGAGGAGCCTGATGAAACCATTGGAGAGAAGATGGAGATGGAGATGGAAGGGAGGAGGCTGATAGGNTCAAGGCCACCAAGGTGTGAGAGGGTGTGCATGTCCTGTGGCCACTGTGAGGCAGTNCAAGTGCCCATTGTGCCACAGGTGATTCAGAAGACACAAACCAAAGCTGCTGCTGCTGCTGCTGCCGAGCAAGAACAGCATGTGGTGGTGAGTNCTACTGCCATCAGTGCTGCAGTTTTCACCTACAGGGTGAATGGCCTCTCAAACTACAAGCCATTNAGCTGGGAAATGCAAGTTTGGTGGCATCATCCTTGATCCCTAATGTTCCCACTCA] [+] EMBL AU065847 [AGGTGGCACATTCAGATGCAAGGAGGTTGCCACTGAAGCTTCTAGAAGTTGGCAACATCAAGGAGGAGCCTGATGAAACCATTGGAGAGAAGATGGAGATGGAGATGGAAGGGAGGAGGCTGATAGGNTCAAGGCCACCAAGGTGTGAGAGGGTGTGCATGTCCTGTGGCCACTGTGAGGCAGTNCAAGTGCCCATTGTGCCACAGGTGATTCAGAAGACACAAACCAAAGCTGCTGCTGCTGCTGCTGCCGAGCAAGAACAGCATGTGGTGGTGAGTNCTACTGCCATCAGTGCTGCAGTTTTCACCTACAGGGTGAATGGCCTCTCAAACTACAAGCCATTNAGCTGGGAAATGCAAGTTTGGTGGCATCATCCTTGATCCCTAATGTTCCCACTCA] consensusID : consensus_3330#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence [CTACTGCCCATCAAGTGCTGCCAGTGTTCACCTACAGGGTGAATGGCCTCTCAAACTACAAGCCATTGAGCTGGAAATGCAAGTGTGGTGGCATCATCCTTGATCCATAATGTTCCAACTCATGGCAGATCACTTCAACATTGTGCAAAAATGTAAACAACTTGCTCCTCTGCTTGTTCATCTGAATTTTTCTTTCTTTGTTGTTCTACTACTAGCTAGTAGCTACTTCCTCCTTTTGATTTCTATCTAGGCCAGAGATTGAAAATGTGGGGAGATGGAGATGAAAAGCTGCATGTTTGTTGTACATTTAGGCAGCAATTTTGTGAAAATGAATGAATGAATGAATGCCTGATTTAGGCATTGAATGCAAAAAAAAAA] [+] EMBL AU101784 [CTACTGCCCATCAAGTGCTGCCAGTGTTCACCTACAGGGTGAATGGCCTCTCAAACTACAAGCCATTGAGCTGGAAATGCAAGTGTGGTGGCATCATCCTTGATCCATAATGTTCCAACTCATGGCAGATCACTTCAACATTGTGCAAAAATGTAAACAACTTGCTCCTCTGCTTGTTCATCTGAATTTTTCTTTCTTTGTTGTTCTACTACTAGCTAGTAGCTACTTCCTCCTTTTGATTTCTATCTAGGCCAGAGATTGAAAATGTGGGGAGATGGAGATGAAAAGCTGCATGTTTGTTGTACATTTAGGCAGCAATTTTGTGAAAATGAATGAATGAATGAATGCCTGATTTAGGCATTGAATGCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3330#0 AGGTGGCACATTCAGATGCAAGGAGGTTGCCACTGAAGCTTCTAGAAGTTGGCAACATCA 60 consensus_3330#1 -----------------------CTACTGCCCATCAAG-TGCTGCCAGTGTTCACCTACA 36 **** * *** * ** *** ** * ** consensus_3330#0 AGGAGGA-GCCTGATGAAACCATTGGAGAGAAGATGGAGATGGAGATGGAAGGGAGGAGG 119 consensus_3330#1 GGGTGAATGGCCTCTCAAACTAC-----AAGCCATTGAGCTGGAAATGCAAGTGTGGTGG 91 ** * * * * * **** * * ** *** **** *** *** * ** ** consensus_3330#0 CTGATAGGNTCAAGGCCACCAAGGTGTGAGAGGGTGTGCATGTCCTGTGGCCACTGTGAG 179 consensus_3330#1 C--ATCATCCTTGATCCAT-AATGTTCCAACTCATG-GCAGATCACTTCAACATTGTGCA 147 * ** *** ** ** * ** *** ** * ** **** consensus_3330#0 GCAGTNCAAGTGCCCATTGTGCCACAGGTGATTCAGAAGACACAAACCAAAGCTGCTGCT 239 consensus_3330#1 AAAATGTAAACAAC--TTGCTCCTCTGCTTGTTCATCTGAATTTTTCTTTCTTTGTTGTT 205 * * ** * *** ** * * * **** ** * ** ** * consensus_3330#0 GCTGCTGCTGCCGAGCAAGAACAGCATGTGGTGGTGAGTNCTACTGCCATCAGTGCTGCA 299 consensus_3330#1 -CTACTACTAGCTAGTAGCTACTTCCTCC--TTTTGATTTCTATCTAGGCCAGAGATTGA 262 ** ** ** * ** * ** * * * *** * *** *** * * * consensus_3330#0 GTTTTCACCTACAGGGTGA--ATGGCCTCTCAAACTACAAGCCATTNAGCTGGGAAAT-- 355 consensus_3330#1 AAATGTGGGGAGATGGAGATGAAAAGCTGCATGTTTGTTGTACATTTAGGCAGCAATTTT 322 * * * ** ** * ** * **** ** * ** * consensus_3330#0 GCAAGTTTGGTGGCATCATCCTTGATCCCTAATGTTCCCACTCA-------------- 399 consensus_3330#1 GTGAAAATGAATGAATGAA--TGAATGCCTGATTTAGGCATTGAATGCAAAAAAAAAA 378 * * ** * ** * * ** *** ** * ** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||