cluster # 3331

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Oryza sativa
cluster # 3331 cluster # 3331 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3331#0 length = 498 sequences # 1

consensus_3331#1 length = 450 sequences # 1

consensusID : consensus_3331#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 498
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCAAAAAACGGGGACTTTATTGGATATATTTTGACCTGGGCCCCAGGGGAAAATTTTTTTAAAAAACCGGGGGTTTTACCAACCTGGGGGTCACCAAATTAGCCAAAACCTTTAAAAAAAACCACCCTTAGGGTTTGCTTTAAAGGTAAACCCCTTAACAAAACCTAATTTCAAAAATTGGGTTAAAGGGAACCAACCTTTGGGATTGAACCCCCCGCTTTTAAAAAAACCCCACCCCAAAGGGCCTTTGCCCCCCCCCCAAAAAAACCCAAAAAAACCCCCCGGTTTTCCCCCCCCCCAAAAACCCCCGGGGGCCCCCCCAAAAAAAAAAAACCCTTCTGGGCCCCCTTTTTTTTCTTTTTTTTTTCCCTTTTCCTTTTCCCCCCCGGCCTTTTTTTTTCCCCCCTCCCCCCGGGGAACAAAAGGGGAAAAGGGGGGG]

[+] EMBL CF319319             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCAAAAAACGGGGACTTTATTGGATATATTTTGACCTGGGCCCCAGGGGAAAATTTTTTTAAAAAACCGGGGGTTTTACCAACCTGGGGGTCACCAAATTAGCCAAAACCTTTAAAAAAAACCACCCTTAGGGTTTGCTTTAAAGGTAAACCCCTTAACAAAACCTAATTTCAAAAATTGGGTTAAAGGGAACCAACCTTTGGGATTGAACCCCCCGCTTTTAAAAAAACCCCACCCCAAAGGGCCTTTGCCCCCCCCCCAAAAAAACCCAAAAAAACCCCCCGGTTTTCCCCCCCCCCAAAAACCCCCGGGGGCCCCCCCAAAAAAAAAAAACCCTTCTGGGCCCCCTTTTTTTTCTTTTTTTTTTCCCTTTTCCTTTTCCCCCCCGGCCTTTTTTTTTCCCCCCTCCCCCCGGGGAACAAAAGGGGAAAAGGGGGGG]




>consensus_3331#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG
CAAAAAACGGGGACTTTATTGGATATATTTTGACCTGGGCCCCAGGGGAAAATTTTTTTA
AAAAACCGGGGGTTTTACCAACCTGGGGGTCACCAAATTAGCCAAAACCTTTAAAAAAAA
CCACCCTTAGGGTTTGCTTTAAAGGTAAACCCCTTAACAAAACCTAATTTCAAAAATTGG
GTTAAAGGGAACCAACCTTTGGGATTGAACCCCCCGCTTTTAAAAAAACCCCACCCCAAA
GGGCCTTTGCCCCCCCCCCAAAAAAACCCAAAAAAACCCCCCGGTTTTCCCCCCCCCCAA
AAACCCCCGGGGGCCCCCCCAAAAAAAAAAAACCCTTCTGGGCCCCCTTTTTTTTCTTTT
TTTTTTCCCTTTTCCTTTTCCCCCCCGGCCTTTTTTTTTCCCCCCTCCCCCCGGGGAACA
AAAGGGGAAAAGGGGGGG

consensusID : consensus_3331#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCCCCCAGGGGGAAATTTTTTTAAAAAACCTGGGGTTTTACCAACCTGGGGGTTACTTATTTTGCCCAAACCTTTAAAAAAATCCACTCTTATGGTTTGCTTTAAAAGTAAACCCTTTTACCATACTTAATTTCAAAAATTGGGTTAAAGGGAACCAACTTTTTTGAATGAACCCCCCGCTTTTATAAAAACCCCATCCCAATGGGCTTTTGCTCCCACCCCAATTAATTCCAAATAAACCACCCGGTTTTCCCATCCTCCAAATACCCCAAGGTGCCCTCCCAAAAAAAAAAAACTCTTCTGGCAGCCCTTCTTTTTCTTTTTCTTTTCCCTCTTCTTCTTCCCCCCCGTCCTTTTTTTTTCCCCCCTCCCACCCGGTAACAAAAAGGAAAAAAGGAAGA]

[+] EMBL CF321164             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCCCCCAGGGGGAAATTTTTTTAAAAAACCTGGGGTTTTACCAACCTGGGGGTTACTTATTTTGCCCAAACCTTTAAAAAAATCCACTCTTATGGTTTGCTTTAAAAGTAAACCCTTTTACCATACTTAATTTCAAAAATTGGGTTAAAGGGAACCAACTTTTTTGAATGAACCCCCCGCTTTTATAAAAACCCCATCCCAATGGGCTTTTGCTCCCACCCCAATTAATTCCAAATAAACCACCCGGTTTTCCCATCCTCCAAATACCCCAAGGTGCCCTCCCAAAAAAAAAAAACTCTTCTGGCAGCCCTTCTTTTTCTTTTTCTTTTCCCTCTTCTTCTTCCCCCCCGTCCTTTTTTTTTCCCCCCTCCCACCCGGTAACAAAAAGGAAAAAAGGAAGA]




>consensus_3331#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCCCCCAGGGG
GAAATTTTTTTAAAAAACCTGGGGTTTTACCAACCTGGGGGTTACTTATTTTGCCCAAAC
CTTTAAAAAAATCCACTCTTATGGTTTGCTTTAAAAGTAAACCCTTTTACCATACTTAAT
TTCAAAAATTGGGTTAAAGGGAACCAACTTTTTTGAATGAACCCCCCGCTTTTATAAAAA
CCCCATCCCAATGGGCTTTTGCTCCCACCCCAATTAATTCCAAATAAACCACCCGGTTTT
CCCATCCTCCAAATACCCCAAGGTGCCCTCCCAAAAAAAAAAAACTCTTCTGGCAGCCCT
TCTTTTTCTTTTTCTTTTCCCTCTTCTTCTTCCCCCCCGTCCTTTTTTTTTCCCCCCTCC
CACCCGGTAACAAAAAGGAAAAAAGGAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3331#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG 60
consensus_3331#1      ----------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG 50
                                *********************************************** **

consensus_3331#0      CAAAAAACGGGGACTTTATTGGATATATTTTGACCTGGGCCCCAGGGGAAAATTTTTTTA 120
consensus_3331#1      C--------------------------------------CCCCAGGGGGAAATTTTTTTA 72
                      *                                      ********* ***********

consensus_3331#0      AAAAACCGGGGGTTTTACCAACCTGGGGGTCACCAAATTAGCCAAAACCTTTAAAAAAAA 180
consensus_3331#1      AAAAACCTGGGGTTTTACCAACCTGGGGGTTACTTATTTTGCCCAAACCTTTAAAAAAAT 132
                      ******* ********************** **  * ** *** *************** 

consensus_3331#0      CCACCCTTAGGGTTTGCTTTAAAGGTAAACCCCTTAACAAAACCTAATTTCAAAAATTGG 240
consensus_3331#1      CCACTCTTATGGTTTGCTTTAAAAGTAAACCCTTTTACCATACTTAATTTCAAAAATTGG 192
                      **** **** ************* ******** ** ** * ** ****************

consensus_3331#0      GTTAAAGGGAACCAACCTTTGGGATTGAACCCCCCGCTTTTAAAAAAACCCCACCCCAAA 300
consensus_3331#1      GTTAAAGGGAACCAACTTTTTTGAATGAACCCCCCGCTTTTATAAAAACCCCATCCCAAT 252
                      **************** ***  ** ***************** ********** ***** 

consensus_3331#0      GGGCCTTTGCCCCCCCCCCAAAAAAACCCAAAAAAACCCCCCGGTTTTCCCCCCCCCCAA 360
consensus_3331#1      GGGCTTTTGCTCCCACCCCAATTAATTCCAAATAAACCACCCGGTTTTCCCATCCTCCAA 312
                      **** ***** *** ******  **  ***** ***** ************  ** ****

consensus_3331#0      AAACCCCCGGGGGCCCCCCCAAAAAAAAAAAACCCTTCTGGGCCCCCTTTTTTTTCTTTT 420
consensus_3331#1      ATACCCCAAGGTGCCCTCCCAAAAAAAAAAAACTCTTCTGGCAGCCCTTCTTTTTCTTTT 372
                      * *****  ** **** **************** *******   ***** **********

consensus_3331#0      TTTTTTCCCTTTTCCTTTTCCCCCCCGGCCTTTTTTTTTCCCCCCTCCCCCCGGGGAACA 480
consensus_3331#1      TCTTTTCCCTCTTCTTCTTCCCCCCCGTCCTTTTTTTTTCCCCCCTCCCACCCGGTAACA 432
                      * ******** *** * ********** ********************* ** ** ****

consensus_3331#0      AAAGGGGAAAAGGGGGGG 498
consensus_3331#1      AAAAGGAAAAAAGGAAGA 450
                      *** ** **** **  *